TCONS_00011946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011946
Unique NameTCONS_00011946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1983

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011946 ID=TCONS_00011946|Name=TCONS_00011946|organism=Clytia hemisphaerica|type=transcript|length=1983bp
AGTTATTGGTTTTACATACTAGAATATAATTATATACAAATGTTGAAGAG
AAACCCTGGTAAAAGCAACCAAGAGTTACATCCTGACGATCTGATTGGTT
AATATTTGATGACGCCCGCCTACGTCAACGATCTTGTTCgaccaaatttc
ttttcttctcaAGAAGTGACGTTAGGGAATGTGACGCAGTTTTCATCATA
CAGCTAACACGCAAGAAGTCAAAACGTAACAAACCGAACAGTATGGATGT
TGCACAAAGTGGACATGTGTTCCAACCACCTATGGGACCACCTCCGAGCT
CTCTTAGCGAAAAGTCAGCTATTTTGCAGCAGCAGTCGGTCATTCAAACA
AATCAACAATTACAGCAGCAACTTCAATCAATGCACGATAATGCTGAAAA
TAACAGGCAGAAAAGTAGAGAGATACTGACTCGGAGGCCTTCCTACagAA
AAATTCTTGATGACCTGGCAGCAGATTCTCCAGTCAAAATGGAAAACTAT
GATGATAATGGAAGTAGTGATGCTTCAAGTCCTGGTGGACCAGAAGAATT
GACAGATAAACAACAACAAGCTCAACAGCAACATCAGCACCAGCAACAAC
AGCAACAGGCTCAGCAACAAGCACAACAACAATATCAAAGTATTCAACTC
AATGGCGTAATTGCTCCCCCATCTTCAGTTGGTGGCACAGTGGTTCAGCT
AAATGATGGCCAGGCTTACACAATAAAAGGTTCTCTTCCTGTTGGATTGG
AAAGTGCAACGCTAGCGTCTCCTCAACAAATGGCAGAAGAAGCAACTAGG
AAAAGAGAACTAAGGTTATACAAAAATAGgGAAGCAGCCAGAGAATGCAG
GCGGaagaaaaaagaatatgtaaaATGTCTAGAAAATAGAGTTGCAGTAC
TAGAAAACCAAAATAAAGCTCTAATAGAAGAACTAAAATCTCTAAAGGAC
TTATACTGTAGTAAAGGAGATTAAGTTGGTGGTTTGTGTCATAATATAGA
GCTGATGTTTGTAAATAGACGTATGTTTTAGAGTTTTTATGgtttaaata
tcttttttcttAACTGATgactaaaaacaacaaaatgatatttttattaG
CACTTTAGAAGGATATTATTTTTcatatgaatttaaaaaaagtgaaatct
tATTTGTTAAGTGTACAAAAATTTGGAGTGGAGTGGGTCAGCCTTACTTT
CTTTGCATGAATCAATTGCACACTAATTTACAATCAACGTAATTCCTTAT
CCTGGACAAGGAAATGAGTGATTTAGCTgaattatattttcattttaatt
acTTTCTTATCTGTTTAGCTCAACAGTTTGTTATCCTCAGAGCAAACTTT
TTAAGATGACATCAAATATTATTTCGgccaatttttcatttattttcaaa
acccATGTTGCAATTTTCCTGATGTCATATTGACTGTTTGTTTTATGATT
AAATCTGTTTACAAATTTGTTCCCTAAACAAGATGATGTTTTCATCTAAA
TGGATTTctaaacgtcaattgacgtcaAGTATCGTTAAAGTGGCTTAAGA
CCCTTCACTTAGATTTTGTGCACGGTTAATAATAATGTATTATTTTTCag
tttatatatattttttatcgtCTCAATTTATCCACTTTTCgtgcttttct
ttctttttttttgtcatggGAATTTTGGAATTGTTTGTTAAGTCCTACCC
AGTTCCatgttttatttgtttcaatattCTGGTGTTTTTGCTTTGGTNGT
CCTACCCAGTTCCatgttttatttgtttcaatattCTGGTGTTTTTGCTT
TGGTATGCattagtttttttatatatttgtttGTCTGTTTTTGAGCCTGT
ATTAATACTGTAAATATTTTACATTATCTCGATAATATTAATAACTAGTC
CTTTCCGTGACAAACTTATTATTGTACATACAATATACCTGTATCCTTAC
AaccaaaatacaaaattattaCCAAATTAAACT
Run BLAST on NCBI

transcript from alignment at sc0000134:267534..272534+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011946 ID=TCONS_00011946|Name=TCONS_00011946|organism=Clytia hemisphaerica|type=transcript|length=5001bp|location=Sequence derived from alignment at sc0000134:267534..272534+ (Clytia hemisphaerica)
AGTTATTGGTTTTACATACTAGAATATAATTATATACAAATGTTGAAGAG
AAACCCTGGTAAAAGCAACCAAGAGTTACATCCTGACGATCTGATTGGTT
AATATTTGATGACGCCCGCCTACGTCAACGATCTTGTTCgaccaaatttc
ttttcttctcaAGAAGTGACGTTAGGGAATGTGACGCAGTTTTCATCATA
CAGCTAACACGCAAGAAGTCAAAACGTAACAAACCGAACAGTAAGAATTC
ATTATACTTGTATACTGTATTTGAACCTGAACGTAGAgattttgtttgtt
attttttggaaagaaactTCTTTTTGTAAACCTTTCAGCATTGGTTCTTA
GTATTGAATTAAATTTGAGTGAGAAAAAAGCGAAGACTAAGGAATTATTA
TGGTTATATTAGGTAtgcttttttaaaatttttacttcaattAAACTTTC
AAATATATTGTGAATTTATTGTCTGATTGGTTTAATTATTTATTATATCA
GGTATGGATGTTGCACAAAGTGGACATGTGTTCCAACCACCTATGGGACC
ACCTCCGAGCTCTCTTAGCGAAAAGTCAGCTATTTTGCAGCAGCAGTCGG
TCATTCAAACAAATCAACAATTACAGCAGCAACTTCAATCAATGCACGAT
AATGCTGAAAATAACAGGCAGAAAAGTAGAGAGATACTGACTCGGAGGCC
TTCCTACaggtatttcaaatttttttataccTGTTGCTTTATGTACCGTG
AGATTGTACAAAATCGCGCATGTTCACGTGCGCAATTTCGTAAAAATTTT
GTCTTTATTACGTGAGTGATTCGTCGCTCTCCACTCCTCCTTATTTCTTC
CTGGAAAAgcatgtaaaatacaaagttaaataaaaacaaaaatggtagag
tagagctgcgagcagagctgcacagttgcattttttaaTGATCAGCCCTA
GGTCTTTTAttttagggctatgcatgttagcttccactgatgtaagttac
ccaatctcacggtagtaAAGCTAGACAAATTTTTGGACCTGCAcatagtt
ttttgtttgtttttatttttgcgcGTAAAACTTATGCCAGTTATTAGGAA
CAGGCAGCTTGCTTGGAATTGGGTTGAAGAATCCCTTGCAAATCATGAGC
TTATTTTTCCCCTTTTTAACTGGTTTAAGTGATGATTTGTTGGAGATCAT
GAAAGTATATTTCATTTTATGGTGAATATCACCAggttttttaagatgaa
aatctTCCTTTTTATCTAGGAAAATTCTTGATGACCTGGCAGCAGATTCT
CCAGTCAAGATGGAAAACTATGATGATAATGGAAGTAGTAATTCTTCAAG
TCCTGGTGGACCAGAAGAATTGACAGATAAACAACAACAAGCTCAACAGC
AACATCAGCACCAGCAACAACAGCAACAGGCTCAGCAACAAGCACAACAA
CAANTTTCTGACCGCGTTATCACCATGTTCCAATGAATGACGTCATGTTT
GGAAAACAATTCGAATCAGAAGAGCTTTGATTGGTTGGCATTGTTAGTTA
TTGGTTTTACATACTAGAATATAATTATATACAAATGTTGAAGAGAAACC
CTGGTAAAAGCAACCAAGAGTTACATCCTGACGATCTGATTGGTTAATAT
TTGATGACGCCCGCCTACGTCAACGATCTTGTTCgaccaaatttcttttc
ttctcaAGAAGTGACGTTAGGGAATGTGACGCAGTTTTCATCATACAGCT
AACACGCAAGAAGTCAAAACGTAACAAACCGAACAGTAAGAATTCATTAT
ACTTGTATACTGTATTTGAACCTGAACGTAGAgattttgtttgttatttt
ttggaaagaaactTCTTTTTGTAAACCTTTCAGCATTGGTTCTTAGTATT
GAATTAAATTTGAGTGAGAAAAAAGCGAAGACTAAGAATTATTATGGTTA
TATTAGGTatgcttttttaaaaattttacttcAATTAAACTTTCAAATAT
ATTGTGAATTTATTATATGATTGGTTTAATTATTTATTATATCAGGTATG
GATGTTGCACAAAGTGGACATGTGTTCCAACCACCTATGGGACCACCACC
GAGCTCTCTTAGTGAAAAGTCAGCTATTTTGCAGCAGCAGTCGGTCATTC
AAACAAATCAACAATTACAGCAGCAACTTCAATCGATGCATGATAATGCT
GAAAATAACAGGCAGAAAAGTAGAGAGATACTGACTCGGAGGCCTTCCTA
CaggtatttcaatttttttttatacctGTTGCTTtatgtaccgtgagatt
gggtaacttttgcatcagtggaggctaacatgcatagccctcaaatgaaa
gacctgactggtcattaaaatcGTGCCTTTCAATAAGACGTGCGCGATCG
CGCTCGCGATGTAAAACGCTCGTCAATCTCGTATGGTGAGCGAAAAATTG
TGCATGTCAATTATACTTTGATTCTATAGAAAAATATCTAAGGGCGTTTT
GTACAAAATCGTGCACGTGAACGTGCGCAATTTCGTAAAAATTTTGTCTT
TATTACGTGAGTGATTCGTTGCTCTCCTCCTTATTTCTTCCTGGAAAAgc
atgtaaaatacaaagttaaataaaaacaaaaatggtagagtagagctgcg
agcagagctgcgtagttgtattttttaatgaTCGGCCAGGTCTTTTAttt
tagggctatgcatgttagcctccactgatgtaagttacccaatctcactg
TAGTAAAGCTAGACAAATTTTTGGACCTGCAcatagtttttgtttgtttt
tatttttgcgcGTAAAATTTATGCAAGTTATTAGGAACAGGCAGCTTGCT
TGGAATTGGGTTGAAGAATGCCTTGCAAATTATGAGCTTATTTTTCCCCT
TTTTAACTGGTTTAAGTGATGATTTGTTGGAGATCATGAAAGTATATTTC
ATTTTATGGTGTATATCACCAGGTTTTTTAGATGAAAATCTTCCTTTTTA
TCTAGAAAAATTCTTGATGACCTGGCAGCAGATTCTCCAGTCAAAATGGA
AAACTATGATGATAATGGAAGTAGTGATGCTTCAAGTCCTGGTGGACCAG
AAGAATTGACAGATAAACAACAACAAGCTCAACAGCAACATCAGCACCAG
CAACAACAGCAACAGGCTCAGCAACAAGCACAACAACAATATCAAAGTAT
TCAACTCAATGGCGTAATTGCTCCCCCATCTTCAGTTGGTGGCACAGTGG
TTCAGCTAAATGATGGCCAGGTACGTAGAATTTAATGGATGAACATAATT
CTGCTAGTGTAATACCGGACGTTGGTCTAATTCCGCTCATCTTTAGATAA
GAAGAAATAGAGATATGCATCTtactaaatttcaaattttacttttcagG
CTTACACAATAAAAGGTTCTCTTCCTGTTGGATTGGAAAGTGCAACGCTA
GCGTCTCCTCAACAAATGGCAGAAGAAGCAACTAGGAAAAGAGAACTAAG
GTTATACAAAAATAGGTAAATATTGCTTGATTTTTACAataattttcacc
attttatcaAGAACAGTTTCTAAATCTGAAACTGAATTTCTTTAACAAAT
TTAGAAAGTTAGCAGAAAACACCAGATACCAAATTAAGGCATCGCATTTG
CAATTTGTGATGCATTTTATGGATTtcttacaagctaaaaatttaTCTAT
TTCAGGATGAAAAAACTATGCTTGCTAAATTCAATGCATGAAATACTGCT
GTTAACCAAACAGCTGATTGATCTTGAATTTAAAGCTCCAAATCAGCATT
TTAGTCAGTATAACATTAACtaaatttatgattttgttcatttttaggGA
AGCAGCCAGAGAATGCAGGCGGaagaaaaaagaatatgtaaaATGTCTAG
AAAATAGAGTTGCAGTACTAGAAAACCAAAATAAAGCTCTAATAGAAGAA
CTAAAATCTCTAAAGGACTTATACTGTAGTAAAGGAGATTAAGTTGGTGG
TTTGTGTCATAATATAGAGCTGATGTTTGTAAATAGACGTATGTTTTAGA
GTTTTTATGgtttaaatatcttttttcttAACTGATgactaaaaacaaca
aaatgatatttttattaGCACTTTAGAAGGATATTATTTTTcatatgaat
ttaaaaaaagtgaaatcttATTTGTTAAGTGTACAAAAATTTGGAGTGGA
GTGGGTCAGCCTTACTTTCTTTGCATGAATCAATTGCACACTAATTTACA
ATCAACGTAATTCCTTATCCTGGACAAGGAAATGAGTGATTTAGCTgaat
tatattttcattttaattacTTTCTTATCTGTTTAGCTCAACAGTTTGTT
ATCCTCAGAGCAAACTTTTTAAGATGACATCAAATATTATTTCGgccaat
ttttcatttattttcaaaacccATGTTGCAATTTTCCTGATGTCATATTG
ACTGTTTGTTTTATGATTAAATCTGTTTACAAATTTGTTCCCTAAACAAG
ATGATGTTTTCATCTAAATGGATTTctaaacgtcaattgacgtcaAGTAT
CGTTAAAGTGGCTTAAGACCCTTCACTTAGATTTTGTGCACGGTTAATAA
TAATGTATTATTTTTCagtttatatatattttttatcgtCTCAATTTATC
CACTTTTCgtgcttttctttctttttttttgtcatggGAATTTTGGAATT
GTTTGTTAAGTCCTACCCAGTTCCatgttttatttgtttcaatattCTGG
TGTTTTTGCTTTGGTNGTCCTACCCAGTTCCatgttttatttgtttcaat
attCTGGTGTTTTTGCTTTGGTATGCattagtttttttatatatttgttt
GTCTGTTTTTGAGCCTGTATTAATACTGTAAATATTTTACATTATCTCGA
TAATATTAATAACTAGTCCTTTCCGTGACAAACTTATTATTGTACATACA
ATATACCTGTATCCTTACAaccaaaatacaaaattattaCCAAATTAAAC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006705XLOC_006705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011946-exon-sc0000134-1491911889:267534..267773TCONS_00011946-exon-sc0000134-1491911889:267534..267773Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1510915933:267534..267773TCONS_00011946-exon-sc0000134-1510915933:267534..267773Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1575043694:267534..267773TCONS_00011946-exon-sc0000134-1575043694:267534..267773Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1491911889:268035..268200TCONS_00011946-exon-sc0000134-1491911889:268035..268200Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1510915933:268035..268200TCONS_00011946-exon-sc0000134-1510915933:268035..268200Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1575043694:268035..268200TCONS_00011946-exon-sc0000134-1575043694:268035..268200Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1491911889:269745..269786TCONS_00011946-exon-sc0000134-1491911889:269745..269786Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1510915933:269745..269786TCONS_00011946-exon-sc0000134-1510915933:269745..269786Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1575043694:269745..269786TCONS_00011946-exon-sc0000134-1575043694:269745..269786Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1491911889:270539..270803TCONS_00011946-exon-sc0000134-1491911889:270539..270803Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1510915933:270539..270803TCONS_00011946-exon-sc0000134-1510915933:270539..270803Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1575043694:270539..270803TCONS_00011946-exon-sc0000134-1575043694:270539..270803Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1491911889:270933..271048TCONS_00011946-exon-sc0000134-1491911889:270933..271048Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1510915933:270933..271048TCONS_00011946-exon-sc0000134-1510915933:270933..271048Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1575043694:270933..271048TCONS_00011946-exon-sc0000134-1575043694:270933..271048Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1491911889:271381..272534TCONS_00011946-exon-sc0000134-1491911889:271381..272534Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1510915933:271381..272534TCONS_00011946-exon-sc0000134-1510915933:271381..272534Clytia hemisphaericaexon
TCONS_00011946-exon-sc0000134-1575043694:271381..272534TCONS_00011946-exon-sc0000134-1575043694:271381..272534Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:267534..272534 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.2488	1.16252	0	0	0.371854	0	0.513395	0	0.235906	0	0	0.301051	1.34034	0	0.00966751	0	0	0	0	0	0	1.17626e-05	0.00438286	0
Blast
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BLAST of TCONS_00011946 vs. Swiss-Prot (Human)
Match: CREB1 (Cyclic AMP-responsive element-binding protein 1 OS=Homo sapiens GN=CREB1 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.382e-25
Identity = 102/226 (45.13%), Postives = 123/226 (54.42%), Query Frame = 3 
Query:  399 NNRQKSREILTRRPSYRKILDDLAADSP-----------------------VKMENYD-DNGSSDASSPGGPEEL----TDKXXXXXXXXXXXXXXXXXXXXXXXXYQSIQLNGVIAPPSSVGGTVVQLNDG--QAYTIKGS-----LPVGLESATLASPQQMAEEATRKRELRLYXXXXXXXXXXXXXXXYVKCLENRVAVLENQNKALIEELKSLKDLYCSKGD 971
             + QK REIL+RRPSYRKIL+DL++D+P                       V    Y   +G   A + GG  +L    TD  Q  Q          Q      Q  Q+     ++ P + V   VVQ   G  Q Y I+ +      P  + +++ A P Q AEEA RKRE+RL KNREAARECRRKKKEYVKCLENRVAVLENQNK LIEELK+LKDLYC K D
Sbjct:  119 TDSQKRREILSRRPSYRKILNDLSSDAPGVPRIEEEKSEEETSAPAITTVTVPTPIYQTSSGQYIAITQGGAIQLANNGTDGVQGLQTLTMTNAAATQPGTTILQYAQTTDGQQILVPSNQV---VVQAASGDVQTYQIRTAPTSTIAPGVVMASSPALPTQPAEEAARKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYCHKSD 341
The following BLAST results are available for this feature:
BLAST of TCONS_00011946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CREB11.382e-2545.13Cyclic AMP-responsive element-binding protein 1 OS... [more]
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