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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011893 ID=TCONS_00011893|Name=TCONS_00011893|organism=Clytia hemisphaerica|type=transcript|length=1642bp
GATAAAAGTTGAAAGTTTGTAAAGCAGTTTTTAACGgtgcatttcaaaat
ttcatcagtCACTGCGACTGCAAAGACAGGGGTGTTCGGTTGTGTGTATT
AAAACAAGTGAATACATATacgttttattcaaaatttttaaataattata
aagtttttacgtttttatctGTCGCTTCAAAGTAATaacagagagaaaaa
aatttcatgatggCATCAAATCACCATCAAATAGCAAATGCTACAGAAAT
GCTTACACATTTCATATTCGGTCAACACGGACATGATTTTCGAGGTTTTC
CAGCTCGTTGTTTCGTAAGATATCGATTTGGTGGTGATGTCGAGTGGGAA
ACATTCTGGGAACGAAAAAGGGATGGTGACGAACTCGACCTGGAAAGAGA
TGATTCGGATTGGGAAGatgataaagaattaaaaagacCTCTTCATGCTG
AAAAATACGTCATCCGAAGGATTCAGAAAGCTGTAGATGACCATGATTCT
GAATCCGATTCTGAATCCGATTCCGATGAGGGAGATGAATTTGACGTTAC
AAAGTATTCATATACTTGCTATCCTCATTATGTTCACCTTCATTACCCTG
CTCGTAATGTATATACTCGCCAATTTGATCAAGTTAGAGATAATTTCACC
GAAGTTGAATgcttttatgaccaaaatattttgtatgacaaaaacaaaac
tttcacgTGTTATAATCCTCAACGCGTGGTGATCGGTAAGGTTGAGTATG
AGGATACGAATACACCCAAAATAGTCATTTGTGATAGTTTGAAAACAAAG
GGAAACCTTCAATGGAATCGTGATGTTAAAGCATGGGACGGAAACCATAA
CCGGGATCTACCAAAACGTCGTGTAGGGATCTTAGAAATTGAAATCTATC
TCAACGCGTCCCCATGTGAAGATTGTTTTACGGCTTTAAAAGAATTTGTC
GAGAAGAATACACATGCTTACATCCATGTCAAATATACATCCTTCTATTA
CACGAGTGATCAAGACCATTTCAACGATGTCAATTCCGAAACTGACAGCC
GTTTGAAAATCACTCCCTTCACTGACTCTGATTGGAAGTTTGTGATTCGA
GAAATTAATGAACTTCaaacaaataaaatcaaacgattggaaaagaaagt
taaaaatctCGAGAAAGACTTGGAAAACGCagaagaaaaattagaaaacg
caGAAGAAGAATTAGAAAACGCAGAAGAAAAATTAGAAGACACAGAAGAA
GACTTAAGTAATAGGATGACAGAATTACATATGAAAGATCAAAAGTTGAA
AGATGCAAAGAAAACAAATAAGTCGCTTACTAAAACAGTTGAAACACTCG
AAAGGAGAAATAAAACGGCGAGCAGCAGTGGCTCAGATTAAcatgttgat
ttttttgattttccaagtgattttttgatttttttggagtAGCAGTAGCT
CAAATAATGATGATTCCTAATGACATGATGAGGTAtgaggtacacgcttt
tttttttataagaatggtgttttttcatttcgtcatggatattcttaact
ttttagcgAAAATCTTCCTAAAATATTCTAACGGTGTTCTTAAATTAAGA
TTGAAATTTAACCTAaatttaacatgtaatacaCAGAAGAAT Run BLAST on NCBI protein sequence of TCONS_00011893-protein >TCONS_00011893-protein ID=TCONS_00011893-protein|Name=TCONS_00011893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
MMASNHHQIANATEMLTHFIFGQHGHDFRGFPARCFVRYRFGGDVEWETF
WERKRDGDELDLERDDSDWEDDKELKRPLHAEKYVIRRIQKAVDDHDSES
DSESDSDEGDEFDVTKYSYTCYPHYVHLHYPARNVYTRQFDQVRDNFTEV
ECFYDQNILYDKNKTFTCYNPQRVVIGKVEYEDTNTPKIVICDSLKTKGN
LQWNRDVKAWDGNHNRDLPKRRVGILEIEIYLNASPCEDCFTALKEFVEK
NTHAYIHVKYTSFYYTSDQDHFNDVNSETDSRLKITPFTDSDWKFVIREI
NELQTNKIKRLEKKVKNLEKDLENAEEKLENAEEELENAEEKLEDTEEDL
SNRMTELHMKDQKLKDAKKTNKSLTKTVETLERRNKTASSSGSD Run BLAST on NCBI transcript from alignment at sc0000133:77152..78793 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011893 ID=TCONS_00011893|Name=TCONS_00011893|organism=Clytia hemisphaerica|type=transcript|length=1642bp|location=Sequence derived from alignment at sc0000133:77152..78793 (Clytia hemisphaerica)
ATTCTTCTGtgtattacatgttaaattTAGGTTAAATTTCAATCTTAATT
TAAGAACACCGTTAGAATATTTTAGGAAGATTTTcgctaaaaagttaaga
atatccatgacgaaatgaaaaaacaccattcttataaaaaaaaaagcgtg
tacctcaTACCTCATCATGTCATTAGGAATCATCATTATTTGAGCTACTG
CTactccaaaaaaatcaaaaaatcacttggaaaatcaaaaaaatcaacat
gTTAATCTGAGCCACTGCTGCTCGCCGTTTTATTTCTCCTTTCGAGTGTT
TCAACTGTTTTAGTAAGCGACTTATTTGTTTTCTTTGCATCTTTCAACTT
TTGATCTTTCATATGTAATTCTGTCATCCTATTACTTAAGTCTTCTTCTG
TGTCTTCTAATTTTTCTTCTGCGTTTTCTAATTCTTCTTCtgcgttttct
aatttttcttctGCGTTTTCCAAGTCTTTCTCGagatttttaactttctt
ttccaatcgtttgattttatttgtttGAAGTTCATTAATTTCTCGAATCA
CAAACTTCCAATCAGAGTCAGTGAAGGGAGTGATTTTCAAACGGCTGTCA
GTTTCGGAATTGACATCGTTGAAATGGTCTTGATCACTCGTGTAATAGAA
GGATGTATATTTGACATGGATGTAAGCATGTGTATTCTTCTCGACAAATT
CTTTTAAAGCCGTAAAACAATCTTCACATGGGGACGCGTTGAGATAGATT
TCAATTTCTAAGATCCCTACACGACGTTTTGGTAGATCCCGGTTATGGTT
TCCGTCCCATGCTTTAACATCACGATTCCATTGAAGGTTTCCCTTTGTTT
TCAAACTATCACAAATGACTATTTTGGGTGTATTCGTATCCTCATACTCA
ACCTTACCGATCACCACGCGTTGAGGATTATAACAcgtgaaagttttgtt
tttgtcatacaaaatattttggtcataaaagcATTCAACTTCGGTGAAAT
TATCTCTAACTTGATCAAATTGGCGAGTATATACATTACGAGCAGGGTAA
TGAAGGTGAACATAATGAGGATAGCAAGTATATGAATACTTTGTAACGTC
AAATTCATCTCCCTCATCGGAATCGGATTCAGAATCGGATTCAGAATCAT
GGTCATCTACAGCTTTCTGAATCCTTCGGATGACGTATTTTTCAGCATGA
AGAGgtctttttaattctttatcatCTTCCCAATCCGAATCATCTCTTTC
CAGGTCGAGTTCGTCACCATCCCTTTTTCGTTCCCAGAATGTTTCCCACT
CGACATCACCACCAAATCGATATCTTACGAAACAACGAGCTGGAAAACCT
CGAAAATCATGTCCGTGTTGACCGAATATGAAATGTGTAAGCATTTCTGT
AGCATTTGCTATTTGATGGTGATTTGATGccatcatgaaatttttttctc
tctgttATTACTTTGAAGCGACagataaaaacgtaaaaactttataatta
tttaaaaattttgaataaaacgtATATGTATTCACTTGTTTTAATACACA
CAACCGAACACCCCTGTCTTTGCAGTCGCAGTGactgatgaaattttgaa
atgcacCGTTAAAAACTGCTTTACAAACTTTCAACTTTTATC Coding sequence (CDS) from alignment at sc0000133:77152..78793 >TCONS_00011893 ID=TCONS_00011893|Name=TCONS_00011893|organism=Clytia hemisphaerica|type=CDS|length=1185bp|location=Sequence derived from alignment at sc0000133:77152..78793 (Clytia hemisphaerica)
TTAATCTGAGCCACTGCTGCTCGCCGTTTTATTTCTCCTTTCGAGTGTTT
CAACTGTTTTAGTAAGCGACTTATTTGTTTTCTTTGCATCTTTCAACTTT
TGATCTTTCATATGTAATTCTGTCATCCTATTACTTAAGTCTTCTTCTGT
GTCTTCTAATTTTTCTTCTGCGTTTTCTAATTCTTCTTCtgcgttttcta
atttttcttctGCGTTTTCCAAGTCTTTCTCGagatttttaactttcttt
tccaatcgtttgattttatttgtttGAAGTTCATTAATTTCTCGAATCAC
AAACTTCCAATCAGAGTCAGTGAAGGGAGTGATTTTCAAACGGCTGTCAG
TTTCGGAATTGACATCGTTGAAATGGTCTTGATCACTCGTGTAATAGAAG
GATGTATATTTGACATGGATGTAAGCATGTGTATTCTTCTCGACAAATTC
TTTTAAAGCCGTAAAACAATCTTCACATGGGGACGCGTTGAGATAGATTT
CAATTTCTAAGATCCCTACACGACGTTTTGGTAGATCCCGGTTATGGTTT
CCGTCCCATGCTTTAACATCACGATTCCATTGAAGGTTTCCCTTTGTTTT
CAAACTATCACAAATGACTATTTTGGGTGTATTCGTATCCTCATACTCAA
CCTTACCGATCACCACGCGTTGAGGATTATAACAcgtgaaagttttgttt
ttgtcatacaaaatattttggtcataaaagcATTCAACTTCGGTGAAATT
ATCTCTAACTTGATCAAATTGGCGAGTATATACATTACGAGCAGGGTAAT
GAAGGTGAACATAATGAGGATAGCAAGTATATGAATACTTTGTAACGTCA
AATTCATCTCCCTCATCGGAATCGGATTCAGAATCGGATTCAGAATCATG
GTCATCTACAGCTTTCTGAATCCTTCGGATGACGTATTTTTCAGCATGAA
GAGgtctttttaattctttatcatCTTCCCAATCCGAATCATCTCTTTCC
AGGTCGAGTTCGTCACCATCCCTTTTTCGTTCCCAGAATGTTTCCCACTC
GACATCACCACCAAATCGATATCTTACGAAACAACGAGCTGGAAAACCTC
GAAAATCATGTCCGTGTTGACCGAATATGAAATGTGTAAGCATTTCTGTA
GCATTTGCTATTTGATGGTGATTTGATGccatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011893-exon-sc0000133-1491911889:77152..78793 | TCONS_00011893-exon-sc0000133-1491911889:77152..78793 | Clytia hemisphaerica | exon |
| TCONS_00011893-exon-sc0000133-1510915933:77152..78793 | TCONS_00011893-exon-sc0000133-1510915933:77152..78793 | Clytia hemisphaerica | exon |
| TCONS_00011893-exon-sc0000133-1575043694:77152..78793 | TCONS_00011893-exon-sc0000133-1575043694:77152..78793 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:77152..78793 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013158 | APOBEC_N |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016814 |
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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