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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011818 ID=TCONS_00011818|Name=TCONS_00011818|organism=Clytia hemisphaerica|type=transcript|length=3674bp
CTAAAACAACCGACACATCCAACACAAACGTATAACGGGGTAATGGTGGT
CTAAGATTGAAAACACCTGTCATTACTGCACTGATTCTAGAACTCTGACC
AATTGGTTTTCCTTCAACTGGGTTGTGGTATGCTGAAATCGCCGATCTGT
AAGTGCATATAGTGTTGTATTGCAAGCCTTTATCAAACAATTTCGCCAAC
AAATCTAGAATAAAATTTATAGAGCATGAAACTGGATCAACCTTCAATGG
AAAGTCCAGCTAGCCCATTTCCCCCAGGCCGGTTCATAATGAGAGATTGA
ACTCTTTCGTCTGGCACTTGAAATAAGGTTGGCTGCCTTTCCTGAAATTC
CTTCTACTTCCAGTGTTTTCGTTAAATTCGCCAGGCCGCTAGAGTTAGTA
TTCATTCTCGAGTTCTAACTCGTTCATCATCTAACAACGTCCATCCTCTA
GGATGCCACTCTCGTTGAGGGTTTGCCGACAGCGAACGGTTGGACCAGTA
ATGATCTCTGGACACACATTTGCATCAGTTTTAGGTACCATGACTGACCT
TGCCACACTGGTATTAGAATTATTTGGGCTACTTTGTTTACGGGTTTGTT
TAGTACTTGGCCGATCAGACAAAACGGAGGAAATGTATACATTGGATGAC
CTCCCCAGAACATTTGGAAGGTATCTATCCTGAGACAAAATGGCTCTGGT
TTCCACGAAGCATACTGAGGAAACTGGTACGACACTCGAGAGGCAAAGAG
ATTTATCTGTGGGTGGCCCAGACTCCTTGTGATCTGTCTGAAAACTTCTC
GGTCTAGTTTCCACTCGCTGAAGTCCTTGACGTTTCTCGACTCCTAATCT
GCTGTCTTGTTTAGTTTTCCAGGAAGGTATTCCACAGTAATTGTCCCCTT
TGATAGTACATGATTCAAAATTTCCTGACTCGATTTCAACAACACCTGGC
TCTGATTACCCCCCATTTTCACTATGTAGGAAGAGTCTAGCGTTGTCCAT
CTGAATGATGGGGGGGGTATGTGTGAATGTTTTTATTGCTAACAAAGCAA
TTCTAGAATGTTTATATGCagtccactttctttcattgaccATGCCCCCT
GTTCGTTTCCCCTGACAATCTTCTCCCCAGCCTTTCTTGGATGCATCCGT
AAACTTTACCATGTCTGGGTTCTTCTTTAACGGAGACTTTTGACAATTTC
AGATTTTCCTTCCACCATTCTAACTCTAGTCTCACCTCCCCAGACAGGCT
TATTTCTGATTGGTAAGAACCTCTTATCAGCCCCTTTATCTGTCATcttt
gaatctttctgtaatgcAGTGGTGCTGCCAACACTGCTACTGCTGACGAT
ATTAACCTCCCCAGGAGTTTGGTCAGAGCCATCAGATTCACCTTTGTTTG
GGACAGAATCTGTTCGCACTGGCTGAcaatcttttctattttttccgaTG
GTAAAGTCAActccatcctcactgaattCACTGTCACACCTAGAACTCCA
ACTCCTAGCATGGTTCTAGTTGggatttttgaatgtttatgATGAAACCC
AGACCTTGTATTAGAAATATCAAAGAGTCTCTTGCCATAAGAATCTCCTC
TCGAGAACTCCCCATAACCAAAATGTCGTCCAGATAGATAATCAACCGAA
TATTCAGTCTTCTCAAGATAGTTATAGGAACCTTCATCAGTTTGGTGAAT
AATCTGGGCGCTGGACCAAGACCGAAACACATACACAGGAACTGATACAA
CCTGCCTTTCCATTTGAACCTGACAAATTTTTTGTACTATTTCCCTAAAG
CTACTGACATGAAAGCGTTCATCAAATCCAATTTGATTAATAAGTCTCCC
GGACAAAATAGATCACTTAGCAAATGCAAACCTTGATTGTGAGAGTTtag
aaattttggatttatcaCTGGTTGataacttttgtcttttttcttcaCCG
TAAAAAGAGTGCTCAAGACATGACCCGGAGATGGAGCGGTTTCTTCTATG
GCTCCTTTTCCCAATAGGCTCTCTATCTCTTGATCTATAATCATCTCTTC
CTCTCTGTTCATTCTTAATGGACAAGGAGAAATTTTCTGAATTGGGATTT
CCCAGTGAACAAAGGGAATCTTGTAACCCTAATTAAGGTCTAGAATAGTC
TGATCGTTTGTGACCCTTTCCCAGTTTTTTAGGAAATACTTCAGCCTGAC
TGCTTATTCTATAACCGAACGGTGTCGAGTCCCCAAAAAGGCCTTTCAAG
GCTTTGTGTACGTTGCCTCGGTTGACGCCACTTGAAACAgaggaaatttt
aaaattcttacgATTGGTGAATCCATCAATATTATTGGGAGAATTGTTGG
GGATTGTTTGGTTGCCTTGATAGGAACGGAAATTTCTGAATGACCAATTG
TATCCTCCTCGCCCTCTTCTTCGCGGTCTCTGAGGAGGAGGGCCTTTCGG
AAAGCGAGAGTTTTTAGGAGACATCGAGTCCTTTAGTAACTGTTTCGTCT
TTAGTTTGGTTTTCTGAGTTTTAACAACGTTGTCTTCGAATAACTTTCCT
CCAAAAAGATAAATTTCATCGTTCACCAAAAGGTGCTTCCAATCTTTGGG
TAGAGGTTTGGCCTTCTTTTTGTCGTTAAACAAGAAAAGAGAATCAATCT
TCTCTGGTACAAAATGTGGTTGATAAGTTGACCAATTATTGTCACTGTCT
GCTCAAAGGATGTAGATGCTGCTCTTGCTCCTTCAATCAGCTCTTCTGGA
GTATTTTCATTCTTGACAATTTTCAAATACTACAGAAGGGGCCCAGGACA
TACCAAACCCACTTCTGGATGTTCATAAGTACCTCATCCTGCTCTATCAC
AAACCTTTTTGCCAGCTTCGTTTAATAATTCTTTAAACGATTCATCTAGA
ATACGAACTTTATCTAAGTTTCTTGGTGGTGGGTAATCTGCAGCGATGCT
ATGTCCGATGGTTTTATAAAGTTATTCATCTGTTTCCTGAAGTATTCAGC
CATGTCTCCAGTTAAATCCCATTCAGCCTCTTCAGCATATGAGGTCTCAA
AACGTTTCTTTTTCGGTTGTTGGGGTGTACTCTCATCATTAGGTCTTTTC
CCATTTTTCATTAACTGTGCCTGGCTCAACAGAACCAGGGGGGATTTCTT
CGTGAGCTTAATCATCAGAGAGGAACTGATAATTTAAAAAGTACATATTA
ATGGCTGCCCTTCTAAGGCAATTTCCACTCTCACGAGTTATTTATTTATA
CGTCCAAACTGACATGAAATTATCTGTCCATATCGACATATATAAGGGTT
CTTACAACCCCATTGCTCAACTACATTTTCACTCACAATGTAGTGATTAC
AAAGATAATTAGGGATGAAAccacaaaaaaattaaagttgaaataaaaaa
actagcTAATCGCGTCCGTCTTCTCAGAGAATGAAGTTACAGAGGTGGCT
AGAAGCGATGGCTTCTAGTTGTGTATTATGGGTATGTCGCTCTGTAGGAT
TAGATCTAGCGAGATTTCACGACgtgaattttatttcaaaatattacatt
TTACACATAGACAATATTATTATGGAGCTATATTATacaatagtttttct
tttagaattataattttattactagtACGTTCACaacgtaaagaaaaaat
atacacaAATTTTGTTGTATTCGC Run BLAST on NCBI protein sequence of TCONS_00011818-protein >TCONS_00011818-protein ID=TCONS_00011818-protein|Name=TCONS_00011818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MERQVVSVPVYVFRSWSSAQIIHQTDEGSYNYLEKTEYSVDYLSGRHFGY
GEFSRGDSYGKRLFDISNTRSGFHHKHSKIPTRTMLGVGVLGVTVNSVRM
ELTLPSEKIEKIVSQCEQILSQTKVNLMALTKLLGRLISSAVAVLAAPLH
YRKIQR Run BLAST on NCBI transcript from alignment at sc0000132:470208..473881 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011818 ID=TCONS_00011818|Name=TCONS_00011818|organism=Clytia hemisphaerica|type=transcript|length=3674bp|location=Sequence derived from alignment at sc0000132:470208..473881 (Clytia hemisphaerica)
GCGAATACAACAAAATTtgtgtatattttttctttacgttGTGAACGTac
tagtaataaaattataattctaaaagaaaaactattgtATAATATAGCTC
CATAATAATATTGTCTATGTGTAAaatgtaatattttgaaataaaattca
cGTCGTGAAATCTCGCTAGATCTAATCCTACAGAGCGACATACCCATAAT
ACACAACTAGAAGCCATCGCTTCTAGCCACCTCTGTAACTTCATTCTCTG
AGAAGACGGACGCGATTAgctagtttttttatttcaactttaattttttt
gtggTTTCATCCCTAATTATCTTTGTAATCACTACATTGTGAGTGAAAAT
GTAGTTGAGCAATGGGGTTGTAAGAACCCTTATATATGTCGATATGGACA
GATAATTTCATGTCAGTTTGGACGTATAAATAAATAACTCGTGAGAGTGG
AAATTGCCTTAGAAGGGCAGCCATTAATATGTACTTTTTAAATTATCAGT
TCCTCTCTGATGATTAAGCTCACGAAGAAATCCCCCCTGGTTCTGTTGAG
CCAGGCACAGTTAATGAAAAATGGGAAAAGACCTAATGATGAGAGTACAC
CCCAACAACCGAAAAAGAAACGTTTTGAGACCTCATATGCTGAAGAGGCT
GAATGGGATTTAACTGGAGACATGGCTGAATACTTCAGGAAACAGATGAA
TAACTTTATAAAACCATCGGACATAGCATCGCTGCAGATTACCCACCACC
AAGAAACTTAGATAAAGTTCGTATTCTAGATGAATCGTTTAAAGAATTAT
TAAACGAAGCTGGCAAAAAGGTTTGTGATAGAGCAGGATGAGGTACTTAT
GAACATCCAGAAGTGGGTTTGGTATGTCCTGGGCCCCTTCTGTAGTATTT
GAAAATTGTCAAGAATGAAAATACTCCAGAAGAGCTGATTGAAGGAGCAA
GAGCAGCATCTACATCCTTTGAGCAGACAGTGACAATAATTGGTCAACTT
ATCAACCACATTTTGTACCAGAGAAGATTGATTCTCTTTTCTTGTTTAAC
GACAAAAAGAAGGCCAAACCTCTACCCAAAGATTGGAAGCACCTTTTGGT
GAACGATGAAATTTATCTTTTTGGAGGAAAGTTATTCGAAGACAACGTTG
TTAAAACTCAGAAAACCAAACTAAAGACGAAACAGTTACTAAAGGACTCG
ATGTCTCCTAAAAACTCTCGCTTTCCGAAAGGCCCTCCTCCTCAGAGACC
GCGAAGAAGAGGGCGAGGAGGATACAATTGGTCATTCAGAAATTTCCGTT
CCTATCAAGGCAACCAAACAATCCCCAACAATTCTCCCAATAATATTGAT
GGATTCACCAATcgtaagaattttaaaatttcctcTGTTTCAAGTGGCGT
CAACCGAGGCAACGTACACAAAGCCTTGAAAGGCCTTTTTGGGGACTCGA
CACCGTTCGGTTATAGAATAAGCAGTCAGGCTGAAGTATTTCCTAAAAAA
CTGGGAAAGGGTCACAAACGATCAGACTATTCTAGACCTTAATTAGGGTT
ACAAGATTCCCTTTGTTCACTGGGAAATCCCAATTCAGAAAATTTCTCCT
TGTCCATTAAGAATGAACAGAGAGGAAGAGATGATTATAGATCAAGAGAT
AGAGAGCCTATTGGGAAAAGGAGCCATAGAAGAAACCGCTCCATCTCCGG
GTCATGTCTTGAGCACTCTTTTTACGGtgaagaaaaaagacaaaagttat
CAACCAGtgataaatccaaaatttctaAACTCTCACAATCAAGGTTTGCA
TTTGCTAAGTGATCTATTTTGTCCGGGAGACTTATTAATCAAATTGGATT
TGATGAACGCTTTCATGTCAGTAGCTTTAGGGAAATAGTACAAAAAATTT
GTCAGGTTCAAATGGAAAGGCAGGTTGTATCAGTTCCTGTGTATGTGTTT
CGGTCTTGGTCCAGCGCCCAGATTATTCACCAAACTGATGAAGGTTCCTA
TAACTATCTTGAGAAGACTGAATATTCGGTTGATTATCTATCTGGACGAC
ATTTTGGTTATGGGGAGTTCTCGAGAGGAGATTCTTATGGCAAGAGACTC
TTTGATATTTCTAATACAAGGTCTGGGTTTCATcataaacattcaaaaat
ccCAACTAGAACCATGCTAGGAGTTGGAGTTCTAGGTGTGACAGTGaatt
cagtgaggatggagTTGACTTTACCAtcggaaaaaatagaaaagattgTC
AGCCAGTGCGAACAGATTCTGTCCCAAACAAAGGTGAATCTGATGGCTCT
GACCAAACTCCTGGGGAGGTTAATATCGTCAGCAGTAGCAGTGTTGGCAG
CACCACTgcattacagaaagattcaaagATGACAGATAAAGGGGCTGATA
AGAGGTTCTTACCAATCAGAAATAAGCCTGTCTGGGGAGGTGAGACTAGA
GTTAGAATGGTGGAAGGAAAATCTGAAATTGTCAAAAGTCTCCGTTAAAG
AAGAACCCAGACATGGTAAAGTTTACGGATGCATCCAAGAAAGGCTGGGG
AGAAGATTGTCAGGGGAAACGAACAGGGGGCATggtcaatgaaagaaagt
ggactGCATATAAACATTCTAGAATTGCTTTGTTAGCAATAAAAACATTC
ACACATACCCCCCCCATCATTCAGATGGACAACGCTAGACTCTTCCTACA
TAGTGAAAATGGGGGGTAATCAGAGCCAGGTGTTGTTGAAATCGAGTCAG
GAAATTTTGAATCATGTACTATCAAAGGGGACAATTACTGTGGAATACCT
TCCTGGAAAACTAAACAAGACAGCAGATTAGGAGTCGAGAAACGTCAAGG
ACTTCAGCGAGTGGAAACTAGACCGAGAAGTTTTCAGACAGATCACAAGG
AGTCTGGGCCACCCACAGATAAATCTCTTTGCCTCTCGAGTGTCGTACCA
GTTTCCTCAGTATGCTTCGTGGAAACCAGAGCCATTTTGTCTCAGGATAG
ATACCTTCCAAATGTTCTGGGGAGGTCATCCAATGTATACATTTCCTCCG
TTTTGTCTGATCGGCCAAGTACTAAACAAACCCGTAAACAAAGTAGCCCA
AATAATTCTAATACCAGTGTGGCAAGGTCAGTCATGGTACCTAAAACTGA
TGCAAATGTGTGTCCAGAGATCATTACTGGTCCAACCGTTCGCTGTCGGC
AAACCCTCAACGAGAGTGGCATCCTAGAGGATGGACGTTGTTAGATGATG
AACGAGTTAGAACTCGAGAATGAATACTAACTCTAGCGGCCTGGCGAATT
TAACGAAAACACTGGAAGTAGAAGGAATTTCAGGAAAGGCAGCCAACCTT
ATTTCAAGTGCCAGACGAAAGAGTTCAATCTCTCATTATGAACCGGCCTG
GGGGAAATGGGCTAGCTGGACTTTCCATTGAAGGTTGATCCAGTTTCATG
CTCTATAAATTTTATTCTAGATTTGTTGGCGAAATTGTTTGATAAAGGCT
TGCAATACAACACTATATGCACTTACAGATCGGCGATTTCAGCATACCAC
AACCCAGTTGAAGGAAAACCAATTGGTCAGAGTTCTAGAATCAGTGCAGT
AATGACAGGTGTTTTCAATCTTAGACCACCATTACCCCGTTATACGTTTG
TGTTGGATGTGTCGGTTGTTTTAG Coding sequence (CDS) from alignment at sc0000132:470208..473881 >TCONS_00011818 ID=TCONS_00011818|Name=TCONS_00011818|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0000132:470208..473881 (Clytia hemisphaerica)
ATGGAAAGGCAGGTTGTATCAGTTCCTGTGTATGTGTTTCGGTCTTGGTC
CAGCGCCCAGATTATTCACCAAACTGATGAAGGTTCCTATAACTATCTTG
AGAAGACTGAATATTCGGTTGATTATCTATCTGGACGACATTTTGGTTAT
GGGGAGTTCTCGAGAGGAGATTCTTATGGCAAGAGACTCTTTGATATTTC
TAATACAAGGTCTGGGTTTCATcataaacattcaaaaatccCAACTAGAA
CCATGCTAGGAGTTGGAGTTCTAGGTGTGACAGTGaattcagtgaggatg
gagTTGACTTTACCAtcggaaaaaatagaaaagattgTCAGCCAGTGCGA
ACAGATTCTGTCCCAAACAAAGGTGAATCTGATGGCTCTGACCAAACTCC
TGGGGAGGTTAATATCGTCAGCAGTAGCAGTGTTGGCAGCACCACTgcat
tacagaaagattcaaagATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011818-exon-sc0000132-1491911889:470208..473881 | TCONS_00011818-exon-sc0000132-1491911889:470208..473881 | Clytia hemisphaerica | exon |
| TCONS_00011818-exon-sc0000132-1510915933:470208..473881 | TCONS_00011818-exon-sc0000132-1510915933:470208..473881 | Clytia hemisphaerica | exon |
| TCONS_00011818-exon-sc0000132-1575043694:470208..473881 | TCONS_00011818-exon-sc0000132-1575043694:470208..473881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000132 | supercontig | sc0000132:470208..473881 . |
Blast
The following BLAST results are available for this feature:
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