TCONS_00011657 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011657
Unique Name	TCONS_00011657
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2600

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000131:328633..335427+
coding sequence from alignment at sc0000131:328633..335427+

transcript sequence

>TCONS_00011657 ID=TCONS_00011657|Name=TCONS_00011657|organism=Clytia hemisphaerica|type=transcript|length=2600bp
aaggaaaattttgaaatctaagTCTTGCTGGACTAAAAGTTGCTTGATTC
TTCGTGCACTTGCTGCTGCACTTTGTACTCAATGAATTTTGTCTTTGTGT
GCACCTAGGGTCTAAAACTGGCTGCACCTGACACTTGGCGAAGGAAGGGA
CTTTTTGCACTTGCACTTGATTTTCGATGAGTGATGCACTCGTGAGCTTT
AGAGAGCCTTCTGCAACTCAACCGGATGATGATAGAAATAGAAAGACTAA
AATTTAAAGGTCCAATATCAAATAGTGCAATCAAAGCcaacaaaaaacta
aaaagtttaaaagtttataCCTTTTCCATTCAATGTGAAGCCATCAGCTC
TGACATATCATCAAACAAAACTGGCACTGGAATTGAGTGGCACCGGTGCC
GCCGGAGGGGAACTGGGCTTATGTCCGCGACCTTTGGAATTTCCGCGAAA
AACATGTAAATAAACATCGTGGTCAAACTCACATAGAAACTTCACATTTA
TTTCGGTCAAATCTTACTCTAGTACGTGTAACCAAGTATAGTAAAACTGC
TTTCGATTTCGCTCGAcgtgcaaaaaaacaaaaaacaacaacaaaaaagg
aNCGTGTAACCAAGTATAGTAAAACTGCTTTCGATTTCGCTCGACGTGca
gaaaacaacaacaaaaaaggaaaaagtcaaGAAGAGCTACTACCTACATA
GTACAAGGTACAATGACTTCACTTGAAATACCAATTCTTCAATGGACTTG
TACCTTTTATGATGAAAAAGAGCGACGTTGGAAGGAGGGAGAATTACAGC
TCAATCAAACTCAAGTTGTCATCGTTTTTGAAGACAAGAGAGACAAAACA
AAGAAGGCAAAAGtgattaaatttcaaaacatttcaaagattacaaaaga
aaaaagttcatACATTTATCCAAGCATTGTTGTGAACCTTTCAAATTGCG
TGGTGTGGTTATCATCTTTTAAAATTAGAGATGAAGTATTCAACAATATT
GAACATTTTTGGCGTATTTCACTCCTTGATTCAAGAGCAAGCAAAAGTGA
ACAGAAGGatagagaattgttgagaaTCGCTTATGAGACTCAAGAGGTTC
TTATTGGTGCGTCCAATCAACTTCAGCAGCAAGGAAGACAACTGAACTCA
GCTGCACGCACTATGGAAAACATGCATAATGATATTACTGTAGCAGAACG
AATCACAGGTGATATTGAATCTTGGTTTGGTGCTTGGAGAGTTAAAGgaa
gatttgaaaatgaaaatacaatgaatgAAAGAATGGACAGTCCTCTTGGG
AGTCAATCAATTGACTACCCAGTATTATACGGCAAGGTTATACAGGAGAG
TCACAAATCTGGACAGGTTGTTTTCAAAGATAATAATTTTGAGCTACTCG
ATGAAAAGCTTGCAGTGGTTTATTCGATACCATTACAACAGATCTCTGAG
ATTGATGTACATTCACCTTGGGACATAACGATCTTGAAAAGATCCCTTGG
TAAACCTTTGATTCGTATTCACCTGACATCTGCAAGAATgcctttgattt
tgaaaaatcttcaacaaTCACAAGGGCCAGAACTGGATCTTGAAACGCTT
CCTCAAGAAACAAAAGAAGTAGATTTTATTGAAGAGcttggagaaaataa
gaacgACCATGCAACAACATCATCTTCATCATCGCCTACCTCAACCACAT
CTGTTTTAACCAAACAAAAGGAACTCGCAATGGATGATGCTGCAGAACTA
AGCAAAGTattaaacaaaatgaaatttcttgCTTCAGATATCAATGTAGA
GCAAGACGCTCAACTGAAACAACTGGACGATTTAACAGAAGGTGTTGATA
GAGCAACATCGCGTTTTAATGCTACGAATCGAAGGATTGAGGATACAATG
CGTTAAATAGtccaatacacgcttttttttataagaatatcttctataaa
aatatcagaatgaaaattgaccaaatcgtaagaataccctaagaataccc
tctagggtgaatttcacagaatttgataagaatacagacattttgtattt
ggttaacagaaaaatactgcttcctttgttagagataaattgaagctttg
aggaagaaatgtaattttaacccaaatgttcactcaaaagtccaaaactc
tcaaatcgatcatttctcatgtttgtaaaaaagtcaagtctaaaaaggta
agaatacgttaagaatatttcatcctcaattttggcactttcttaagaac
acttgaccctcatccaaagtacactattcttataaaaaaaagcgtgtatc
tttTATGGGTTTGTTTTGTGATGAAGATGTGGTCATTTGATATTTCTGTT
TTCTCCCAAGAGCAAAACTTTAAATAGTGCTACACTATCGATATCAGATG
GAAATATGCCTCTGTTTTCAACTATGTTCTGGTATTTCACCGGGTAAAGT
CAACAATgtttgacttttatttttaagactgaatttttcaatatttatat
gtcgatatcattgtgaatataagtttttagaatttgttAGTAtgcattag
aaaaatatagacAAGTTTAAGTTTAATAGCGTTAAAATTTTATACAAAGC

Run BLAST on NCBI

protein sequence of TCONS_00011657-protein

>TCONS_00011657-protein ID=TCONS_00011657-protein|Name=TCONS_00011657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
MTSLEIPILQWTCTFYDEKERRWKEGELQLNQTQVVIVFEDKRDKTKKAK
VIKFQNISKITKEKSSYIYPSIVVNLSNCVVWLSSFKIRDEVFNNIEHFW
RISLLDSRASKSEQKDRELLRIAYETQEVLIGASNQLQQQGRQLNSAART
MENMHNDITVAERITGDIESWFGAWRVKGRFENENTMNERMDSPLGSQSI
DYPVLYGKVIQESHKSGQVVFKDNNFELLDEKLAVVYSIPLQQISEIDVH
SPWDITILKRSLGKPLIRIHLTSARMPLILKNLQQSQGPELDLETLPQET
KEVDFIEELGENKNDHATTSSSSSPTSTTSVLTKQKELAMDDAAELSKVL
NKMKFLASDINVEQDAQLKQLDDLTEGVDRATSRFNATNRRIEDTMR

Run BLAST on NCBI

transcript from alignment at sc0000131:328633..335427+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011657 ID=TCONS_00011657|Name=TCONS_00011657|organism=Clytia hemisphaerica|type=transcript|length=6795bp|location=Sequence derived from alignment at sc0000131:328633..335427+ (Clytia hemisphaerica)
aaggaaaattttgaaatctaagTCTTGCTGGACTAAAAGTTGCTTGATTC
TTCGTGCACTTGCTGCTGCACTTTGTACTCAATGAATTTTGTCTTTGTGT
GCACCTAGGGTCTAAAACTGGCTGCACCTGACACTTGGCGAAGGAAGGGA
CTTTTTGCACTTGCACTTGATTTTCGATGAGTGATGCACTCGTGAGCTTT
AGAGAGCCTTCTGCAACTCAACCGGATGATGATAGAAATAGAAAGACTAA
AATTTAAAGGTCCAATATCAAATAGTGCAATCAAAGCcaacaaaaaacta
aaaagtttaaaagtttataCCTTTTCCATTCAATGTGAAGCCATCAGCTC
TGACATATCATCAAACAAAACTGGCACTGGAATTGAGTGGCACCGGTGCC
GCCGGAGGGGAACTGGGCTTATGTCCGCGACCTTTGGAATTTCCGCGAAA
AACATGTAAATAAACATCGTGGTCAAACTCACATAGAAACTTCACATTTA
TTTCGGTCAAATCTTACTCTAGTACGTGTAACCAAGTATAGTAAAACTGC
TTTCGATTTCGCTCGAcgtgcaaaaaaacaaaaaacaacaacaaaaaagg
aNCGTGTAACCAAGTATAGTAAAACTGCTTTCGATTTCGCTCGACGTGca
gaaaacaacaacaaaaaaggaaaaagtcaaGAAGAGCTACTACCTACATA
GTACAAGGTACAATGACTTCACTTGAAATACCAATTCTTCAATGGACTTG
TACCTTTTATGATGAAAAAGAGCGACGTTGGAAGGAGGGAGAATTACAGC
TCAATCAAACTCAAGTTGTCATCGTTTTTGAAGACAAGAGAGACAAAACA
AAGAAGGCAAAAGtgattaaatttcaaaacatttcaaagattacaaaaga
aaaaagttcatACATTTATCCAAGCATTGTTGTGAACCTTTCAAATTGCG
TGGTGTGGTTATCATCTTTTAAAATTAGAGATGAAGTATTCAACAATATT
GAACATTTTTGGCGTATTTCACTCCTTGATTCAAGAGCAAGCAAAAGGTA
TATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattttcagatt
cgattgatattcgattgcgttcgattgatgttcgattgcgttcgattgtc
gattcattgacccccggattgttcatcgcataatttctacgggaaatcaa
aagtaatttcatttggcttgtgatgtttgagagcttggatgttggaaagc
tgcaagaataaagccagacgatctcaaccgaactgaatcgacgatcgaac
cagtcgaacaacaatcgaaccaatggaatattacccagaattttgacgtt
cgattgagattcgattgcgttcgacaatcgaatttcaatcggtcgatttg
GTTACTTACTTTACTTTTGGTTACTTTTGGTTGTCTTCGAGCTTCATGCT
CTGGCAAGAAACTTTCTGCTTCACACCACAATGCTGCATCCATCAAACCT
GAATAAGGAAGGATGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGATTGGTCCGGA
TATACCCAATTGCTTTAATTTCCCAAGTACAACTGCATGATCGACTTTGT
CGAAAGCCTTTGAGAAATCAAGGTAAACAACATCtgcattcgactggttc
gactggttcgatcgtcgattccgtgcgattgagatcgtctggatatcatt
atgattttttttaaagttcacgACCGACGGTACGGCCCGCAAACAAAtag
caaaatattcttttgaccCAAAAATAGTTTCAGGCCAATCTTGGGCCATA
AAGTCTTGGATTTTTCCTTTCCTCCCCTTGGAAAACTTGGCCCGAACCAT
GCCAGTTTACCGTCCTTTTgtataagtttcccatttctgcactaagattc
ttgtcacttttctgAAATCCTTTTGCTATTTTTCCCGGGCTaacatagct
gtcaactctcccgcattgGACGGGAGACTCCCGCATGCCAACGTCTTCTC
ACGCAggaaaaaaattcagccaaatctctcgcatttttaacattttctcc
cGCTTCTCCCGCAAATTCTACGATTTTCTcgatttccccaaaaaaactTC
CAATAAAATTGGACTTCGCAGGAAAATTCCctcgatttcctgatttttcg
attcagaaaaattggattatcagggaaaatttttccgacttaAAGCTCTC
CCACATTTTTGCGAGgcaaagttgacagctatggCTAACCGGCAGGAGAT
TGAAATGGGTTTGTCTCTAAAGGTACGGGAAAATCTTGTTCTTACTCATT
CAAAATGGCCTAACTTTCCAATTCCGAggcttatttttcaactacccaaa
gttctggtctttttccgctagaaaactggcaaaataattttagtgcggaa
atgggaaacttatacAAAAGGTCATGTTTGGGACTTATTCAAGCTCAAAA
TTGACAAGTGTCCTGAAAAAGTTCAGGCCATACTGTTGGTCCcaaaaatt
cagacaaaaacAACGAATAATTAGTGTTACACATAATTACTCCAAAAACA
TTACACAATCCTATCGTCTTACACGCTTTTTAATAAGGAACACCTTTATA
AGGAGCTTGAGGcagaaaaataaggaattgctAACTGAGatagttatggc
atgtctcaaaaactgaaaattaatgtaatttttagatcgcattagttgac
agaaataaccaaaaaaatgactgaacatgaagttttaatgacgtcatcaa
ttatgacatcataatcagtttttccaggtttttcATGTTCCTTATTTGAA
AAAACGTGTTTATGTTTTTGGAATCATTACATAATATTTTCACTGCTAGT
TTTTGGAGTCAAATGGTATGAAGTCTTACAAAATTGCTTTAATCAATTCT
AACTATTAATATATCGGAAGTACTGTTATTGTCTCTCGCCTATTATAGAC
CTTTTCCTAATGGCGATAGCATGTTGAATTAGTTAATAAGAACTCCATCC
CAACTTTACCTTGAATTATAGGTTTGTTACTTAAAACAGTTTTACAATTC
TGCAGGCCACCTTGCGATTATTCTATGAAATTATTAATATTAGAAAAATT
TATGCTAGAGGAATTATTTATTGTTGTTTGagttatttttgttgttttgt
gtttcCCTCAAATCCATTCAAACTTGAGTTCTATTGCAAATTACAGtatg
ttgaaattttttaattgttcaATAGGGCATTGTGACAAGAGTAGATATAC
ACTGAGCATAAGCTTgatcttttttgttattttgtaatatattttctgcT
AGCTCATAAGCTCAATGTCtataaaaaattgatattaaaGATAGCtctta
aactttcaaaataaaagattttaggttgTTAAAATATCATTTATCAATAG
CAAATTTACTGAAGACTTGCATAATTTTTAATCAATGTTGGTCTCGGAAC
CAAATCCAGGGGCAGGATTCTGGAGTGGGCAAATTTCCCGAGGTTACTTA
TAAAACTTCATGAGTGAAACGAGGGAAGTTGCACAAGTTAGAGAAGGATG
ATCACGTCTGAGGCATTTCTCACTCAACTTATTCTATTCTGGGATATAta
ctttacaaatctaagctggAGCTAGATCCATCACCTTCAAGTGTACGTCA
AAATTGATGAACGTGAAAGGCtataaaatatcaaatattttcaattaaaa
ttttcacttcATTTGAATTACTTCTTATTCTTAGTGAACAGAAGGataga
gaattgttgagaaTCGCTTATGAGACTCAAGAGGTTCTTATTGGTGCGTC
CAATCAACTTCAGCAGCAAGGAAGACAACTGAACTCAGCTGCACGCACTA
TGGAAAACATGCATAATGATATTACTGTAGCAGAACGAATCACAGGTGAT
ATTGAATCTTGGTTTGGTGCTTGGAGAGTTAAAGgaagatttgaaaatga
aaatacaatgaatgAAAGAATGGACAGTCCTCTTGGGAGTCAATCAATTG
ACTACCCAGTATTATACGGCAAGGTTATACAGGAGAGTCACAAATCTGGA
CAGGTTGTTTTCAAAGATAATAATTTTGAGCTACTCGATGAAAAGCTTGC
AGTGGTTTATTCGATACCATTACAACAGATCTCTGAGATTGATGTACATT
CACCTTGGGACATAACGATCTTGAAAAGATCCCTTGGTAAACCTTTGATT
CGTATTCACCTGACATCTGCAAGAATgcctttgattttgaaaaatcttca
acaaTCACAAGGGCCAGAACTGGATCTTGAAACGCTTCCTCAAGAAACAA
AAGAAGTAGATTTTATTGAAGAGcttggagaaaataagaacggTAAGAAT
AGACAATTCTCAGTTCGATTTTTTTTCCCGTGGGACAATGGAGGGCTTTT
CAAATGGTAGGGAAATCAGATAGCTTAAAAGTATACATTTCTTTTTACTT
ATTTAAATGTAAATGTTGAGTCTCTTAGGACGTCCATTGTTGTATATATG
GACCGTAGTCGTTTCACTTAGAATCAACTTAATGTCTTTAGCAAACTTGA
GGGAATACTTAGGAATCAAGGAATGTAttataaaacagaaaaatgaagcg
actgcttatGTTGAAATTTTCGTCGTGAACGCACAAAAGACGACGAAAAT
TTCAACATAGCAGTCgctttatttttctgttttataaATTTGCTGCTTTC
GAATTTTATGTCTTCTAAGAAATGTAATGATGTTATGTTCAACATTTCAG
ACCATGCAACAACATCATCTTCATCATCGCCTACCTCAACCACATCTGTT
TTAACCAAACAAAAGGAACTCGCAATGGATGATGCTGCAGAACTAAGCAA
AGTattaaacaaaatgaaatttcttgCTTCAGATATCAATGTAGAGCAAG
ACGCTCAACTGAAACAACTGGACGATTTAACAGAAGGTGTTGATAGAGCA
ACATCGCGTTTTAATGCTACGAATCGAAGGATTGAGGATACAATGCGTTA
AATAGtccaatacacgcttttttttataagaatatcttctataaaaatat
cagaatgaaaattgaccaaatcgtaagaataccctaagaataccctctag
ggtgaatttcacagaatttgataagaatacagacattttgtatttggtta
acagaaaaatactgcttcctttgttagagataaattgaagctttgaggaa
gaaatgtaattttaacccaaatgttcactcaaaagtccaaaactctcaaa
tcgatcatttctcatgtttgtaaaaaagtcaagtctaaaaaggtaagaat
acgttaagaatatttcatcctcaattttggcactttcttaagaacacttg
accctcatccaaagtacactattcttataaaaaaaagcgtgtatctttTA
TGGGTTTGTTTTGTGATGAAGATGTGGTCATTTGATATTTCTGTTTTCTC
CCAAGAGCAAAACTTTAAATAGTGCTACACTATCGATATCAGATGGAAAT
ATGCCTCTGTTTTCAACTATGTTCTGGTATTTCACCGGGTAAAGTCAACA
ATgtttgacttttatttttaagactgaatttttcaatatttatatgtcga
tatcattgtgaatataagtttttagaatttgttAGTAtgcattagaaaaa
tatagacAAGTTTAAGTTTAATAGCGTTAAAATTTTATACAAAGC

Coding sequence (CDS) from alignment at sc0000131:328633..335427+

>TCONS_00011657 ID=TCONS_00011657|Name=TCONS_00011657|organism=Clytia hemisphaerica|type=CDS|length=3582bp|location=Sequence derived from alignment at sc0000131:328633..335427+ (Clytia hemisphaerica)
ATGACTTCACTTGAAATACCAATTCTTCAATGGACTTGTACCTTTTATGA
TGAAAAAGAGCGACGTTGGAAGGAGGGAGAATTACAGCTCAATCAAACTC
AAGTTGTCATCGTTTTTGAAGACAAGAGAGACAAAACAAAGAAGGCAAAA
GtgattaaatttcaaaacatttcaaagattacaaaagaaaaaagttcatA
CATTTATCCAAGCATTGTTGTGAACCTTTCAAATTGCGTGGTGTGGTTAT
CATCTTTTAAAATTAGAGATGAAGTATTCAACAATATTGAACATTTTTGG
CGTATTTCACTCCTTGATTCAAGAGCAAGCAAAAGTGAACAGAAGGatag
agaattgttgagaaTCGCTTATGAGACTCAAGAGGTTCTTATTGGTGCGT
CCAATCAACTTCAGCAGCAAGGAAGACAACTGAACTCAGCTGCACGCACT
ATGGAAAACATGCATAATGATATTACTGTAGCAGAACGAATCACAGGTGA
TATTGAATCTTGGTTTGGTGCTTGGAGAGTTAAAGgaagatttgaaaatg
aaaatacaatgaatgAAAGAATGGACAGTCCTCTTGGGAGTCAATCAATT
GACTACCCAGTATTATACGGCAAGGTTATACAGGAGAGTCACAAATCTGG
ACAGGTTGTTTTCAAAGATAATAATTTTGAGCTACTCGATGAAAAGCTTG
CAGTGGTTTATTCGATACCATTACAACAGATCTCTGAGATTGATGTACAT
TCACCTTGGGACATAACGATCTTGAAAAGATCCCTTGGTAAACCTTTGAT
TCGTATTCACCTGACATCTGCAAGAATgcctttgattttgaaaaatcttc
aacaaTCACAAGGGCCAGAACTGGATCTTGAAACGCTTCCTCAAGAAACA
AAAGAAGTAGATTTTATTGAAGAGcttggagaaaataagaacgACCATGC
AACAACATCATCTTCATCATCGCCTACCTCAACCACATCTGTTTTAACCA
AACAAAAGGAACTCGCAATGGATGATGCTGCAGAACTAAGCAAAGTatta
aacaaaatgaaatttcttgCTTCAGATATCAATGTAGAGCAAGACGCTCA
ACTGAAACAACTGGACGATTTAACAGAAGGTGTTGATAGAGCAACATCGC
GTTTTAATGCTACGAATCGAAGGATTGAGGATACAATGCGTTAAATGACT
TCACTTGAAATACCAATTCTTCAATGGACTTGTACCTTTTATGATGAAAA
AGAGCGACGTTGGAAGGAGGGAGAATTACAGCTCAATCAAACTCAAGTTG
TCATCGTTTTTGAAGACAAGAGAGACAAAACAAAGAAGGCAAAAGtgatt
aaatttcaaaacatttcaaagattacaaaagaaaaaagttcatACATTTA
TCCAAGCATTGTTGTGAACCTTTCAAATTGCGTGGTGTGGTTATCATCTT
TTAAAATTAGAGATGAAGTATTCAACAATATTGAACATTTTTGGCGTATT
TCACTCCTTGATTCAAGAGCAAGCAAAAGTGAACAGAAGGatagagaatt
gttgagaaTCGCTTATGAGACTCAAGAGGTTCTTATTGGTGCGTCCAATC
AACTTCAGCAGCAAGGAAGACAACTGAACTCAGCTGCACGCACTATGGAA
AACATGCATAATGATATTACTGTAGCAGAACGAATCACAGGTGATATTGA
ATCTTGGTTTGGTGCTTGGAGAGTTAAAGgaagatttgaaaatgaaaata
caatgaatgAAAGAATGGACAGTCCTCTTGGGAGTCAATCAATTGACTAC
CCAGTATTATACGGCAAGGTTATACAGGAGAGTCACAAATCTGGACAGGT
TGTTTTCAAAGATAATAATTTTGAGCTACTCGATGAAAAGCTTGCAGTGG
TTTATTCGATACCATTACAACAGATCTCTGAGATTGATGTACATTCACCT
TGGGACATAACGATCTTGAAAAGATCCCTTGGTAAACCTTTGATTCGTAT
TCACCTGACATCTGCAAGAATgcctttgattttgaaaaatcttcaacaaT
CACAAGGGCCAGAACTGGATCTTGAAACGCTTCCTCAAGAAACAAAAGAA
GTAGATTTTATTGAAGAGcttggagaaaataagaacgACCATGCAACAAC
ATCATCTTCATCATCGCCTACCTCAACCACATCTGTTTTAACCAAACAAA
AGGAACTCGCAATGGATGATGCTGCAGAACTAAGCAAAGTattaaacaaa
atgaaatttcttgCTTCAGATATCAATGTAGAGCAAGACGCTCAACTGAA
ACAACTGGACGATTTAACAGAAGGTGTTGATAGAGCAACATCGCGTTTTA
ATGCTACGAATCGAAGGATTGAGGATACAATGCGTTAAATGACTTCACTT
GAAATACCAATTCTTCAATGGACTTGTACCTTTTATGATGAAAAAGAGCG
ACGTTGGAAGGAGGGAGAATTACAGCTCAATCAAACTCAAGTTGTCATCG
TTTTTGAAGACAAGAGAGACAAAACAAAGAAGGCAAAAGtgattaaattt
caaaacatttcaaagattacaaaagaaaaaagttcatACATTTATCCAAG
CATTGTTGTGAACCTTTCAAATTGCGTGGTGTGGTTATCATCTTTTAAAA
TTAGAGATGAAGTATTCAACAATATTGAACATTTTTGGCGTATTTCACTC
CTTGATTCAAGAGCAAGCAAAAGTGAACAGAAGGatagagaattgttgag
aaTCGCTTATGAGACTCAAGAGGTTCTTATTGGTGCGTCCAATCAACTTC
AGCAGCAAGGAAGACAACTGAACTCAGCTGCACGCACTATGGAAAACATG
CATAATGATATTACTGTAGCAGAACGAATCACAGGTGATATTGAATCTTG
GTTTGGTGCTTGGAGAGTTAAAGgaagatttgaaaatgaaaatacaatga
atgAAAGAATGGACAGTCCTCTTGGGAGTCAATCAATTGACTACCCAGTA
TTATACGGCAAGGTTATACAGGAGAGTCACAAATCTGGACAGGTTGTTTT
CAAAGATAATAATTTTGAGCTACTCGATGAAAAGCTTGCAGTGGTTTATT
CGATACCATTACAACAGATCTCTGAGATTGATGTACATTCACCTTGGGAC
ATAACGATCTTGAAAAGATCCCTTGGTAAACCTTTGATTCGTATTCACCT
GACATCTGCAAGAATgcctttgattttgaaaaatcttcaacaaTCACAAG
GGCCAGAACTGGATCTTGAAACGCTTCCTCAAGAAACAAAAGAAGTAGAT
TTTATTGAAGAGcttggagaaaataagaacgACCATGCAACAACATCATC
TTCATCATCGCCTACCTCAACCACATCTGTTTTAACCAAACAAAAGGAAC
TCGCAATGGATGATGCTGCAGAACTAAGCAAAGTattaaacaaaatgaaa
tttcttgCTTCAGATATCAATGTAGAGCAAGACGCTCAACTGAAACAACT
GGACGATTTAACAGAAGGTGTTGATAGAGCAACATCGCGTTTTAATGCTA
CGAATCGAAGGATTGAGGATACAATGCGTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006540	XLOC_006540	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011657-protein	TCONS_00011657-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011657-exon-sc0000131-1491911889:328633..329679	TCONS_00011657-exon-sc0000131-1491911889:328633..329679	Clytia hemisphaerica	exon
TCONS_00011657-exon-sc0000131-1510915933:328633..329679	TCONS_00011657-exon-sc0000131-1510915933:328633..329679	Clytia hemisphaerica	exon
TCONS_00011657-exon-sc0000131-1575043694:328633..329679	TCONS_00011657-exon-sc0000131-1575043694:328633..329679	Clytia hemisphaerica	exon
TCONS_00011657-exon-sc0000131-1491911889:333467..334074	TCONS_00011657-exon-sc0000131-1491911889:333467..334074	Clytia hemisphaerica	exon
TCONS_00011657-exon-sc0000131-1510915933:333467..334074	TCONS_00011657-exon-sc0000131-1510915933:333467..334074	Clytia hemisphaerica	exon
TCONS_00011657-exon-sc0000131-1575043694:333467..334074	TCONS_00011657-exon-sc0000131-1575043694:333467..334074	Clytia hemisphaerica	exon
TCONS_00011657-exon-sc0000131-1491911889:334483..335427	TCONS_00011657-exon-sc0000131-1491911889:334483..335427	Clytia hemisphaerica	exon
TCONS_00011657-exon-sc0000131-1510915933:334483..335427	TCONS_00011657-exon-sc0000131-1510915933:334483..335427	Clytia hemisphaerica	exon
TCONS_00011657-exon-sc0000131-1575043694:334483..335427	TCONS_00011657-exon-sc0000131-1575043694:334483..335427	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000131	supercontig	sc0000131:328633..335427 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.8556	3.65524	4.17107	4.47173	4.99741	3.99823	3.03224	3.0285	2.31694	2.60163	3.05085	2.33662	3.71214	2.43376	1.85861	2.97419	2.0831	2.98239	1.8624	2.10469	2.36828	1.78773	2.66955	3.48314	9.88872	9.54558	4.34006	2.68112	4.75838	4.5929

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000727	T_SNARE_dom

Blast

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BLAST of TCONS_00011657 vs. Swiss-Prot (Human)
Match: SNP47 (Synaptosomal-associated protein 47 OS=Homo sapiens GN=SNAP47 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 3.243e-33
Identity = 112/419 (26.73%), Postives = 195/419 (46.54%), Query Frame = 2

Query:  719 SLEIPILQWTCTFYDEKERRWKEGELQLNQTQVVIVFEDKRDKTKKAKV-IKFQNISKITKEKSSYIYPSI-VVNLSNCVVWLSSFKI-RDEVFNNIEHFWRISLLD-----SRASKSEQKDRELLRIAYETQEVLIGASNQLQQQGRQLNSAARTMENMHNDITVAERITGDIES--WFG----AWRVKGRFENENTMNERMDSPLGSQSI--DYPVLYGKVIQESHKSGQVVFKDNNFELLDEKLAVVYSIPLQQISEIDVHSPWDITILKRSLGKPLIRIHLTSARMPLILKNLQQSQGPELDL-----------ETLPQETKEVDFIEELG-ENKNDHAXXXXXXXXXXXXXVLTKQKELAMDDAAELSKVLNKMKFLASDINVEQDAQLKQLDDLTEGVDRATSRFNATNRRIE 1891
            S ++ I  W CT+Y E +RRW  G+L L    +  +     D T +  V     +I +I KE S +I+ SI ++   +   W SS +  R+ VF+ IEHFWR  LL      + AS    +  EL  +   +Q+ L   +  L  QG+QL+S  R ++ M +D+ VA+R+  ++ES  W+      W+     +    ++     P G + I    P +     +   K G++    +  E+ D    +++    + + +I VHSP++I+I +R +GKP +   L SA+MP ++  L+     +++L            + P E     +    G   +  H    +     +   + T    L+  D  EL+++L +MK LA +   E + Q + LD +   VDRAT   +  NRR++
Sbjct:   47 SRDVCIHTWPCTYYLEPKRRWVTGQLSLTSLSLRFMT----DSTGEILVSFPLSSIVEIKKEASHFIFSSITILEKGHAKHWFSSLRPSRNVVFSIIEHFWRELLLSQPGAVADASVPRTRGEELTGLMAGSQKRLEDTARVLHHQGQQLDSVMRGLDKMESDLEVADRLLTELESPAWWPFSSKLWKTPPETKPREDVSMTSCEPFGKEGILIKIPAVISHRTESHVKPGRLTVLVSGLEIHDSSSLLMHRFEREDVDDIKVHSPYEISIRQRFIGKPDMAYRLISAKMPEVIPILEVQFSKKMELLEDALVLRSARTSSPAEKSCSVWHAASGLMGRTLHREPPAGDQEGTALHLQTSLPALSEADTQELTQILRRMKGLALEAESELERQDEALDGVAAAVDRATLTIDKHNRRMK 461

The following BLAST results are available for this feature:

BLAST of TCONS_00011657 vs. Swiss-Prot (Human)

BLAST of TCONS_00011657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SNP47	3.243e-33	26.73	Synaptosomal-associated protein 47 OS=Homo sapiens...	[more]

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TCONS_00011657 (transcript) - C. hemisphaerica