TCONS_00011555 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011555
Unique Name	TCONS_00011555
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3172

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000130:517787..528497+

transcript sequence

>TCONS_00011555 ID=TCONS_00011555|Name=TCONS_00011555|organism=Clytia hemisphaerica|type=transcript|length=3172bp
cccagactgacaAAATGGCGGGGAAAGGGGTCAATCTTGAAGTCACTCAA
CATGCCTAAAGTGAACAAAAACCAAACATTTCCttcgttcttataaatag
ctattgtattctaacaaaggctttattaatttgacctccgaacagaaaca
gccacATCTAGTATCTAGTTCAATTTCAACTGTTTTGAAGAGGAAGGGGG
AAGAGAGGTTTTTTTTATCAACTGCTGTTTGAAAACTTCATTTATGGCAC
TTTAACTTTCATGAAGTACATTTGTGCAATCACTTCACCAATTTTTAAAT
TCTTAGGCCACGGTGACAAATAAGTTGTGTTTGCGTcctccgaccgactc
actttttatcttaaaaatctGACCCTTTTCTAGTCGGAAAGGGCGatatt
attaaaataattttgtagaTGCAGCATAGCCAGCGTTTTGATCATTGAGT
GTTTTTAAGATTTCTATCCACaattttctgaagattttttgtgttaaaag
gCACTAATGCTTTTTGAGCGGTCGCGACGATATGCAAAATAATTGCATTA
CAGATGATTCTTGTCACCTGAACAAACCTTTGCTCAGAGTGCATCTTGTT
GATGATTTTAACACAGCTCGACTGCCTATATTGAGAGCACATTTTTCAGA
TGGTTAAAGATATGCCAAGAAGCGACCGACCAAATCACATTTTGGGGCTG
TAAATGACACGAACACAAGTTGTTGGTGACCCAGGCCTTAGTCTTAGTAA
GGCTTAAGAAATAAATTGAGGGTCCCTTTAAAGGATTGATATTAAAGTTG
CAATCAGAAGGTTTTCTTTAGAGAACTGAAGTCCCATCTGAAAAAGCCCC
CTTCAGTTACACAAAATATAAAAGGTAAATCAAATTGTATACATACTCTT
GACTGATTAACTACATTGGCGATGACAACAAGTTTTCCATCGTATTTTCC
TCCATTGACAAGTGTCACACGTCCGGCTTCTACAAACTTGGTGAAACCCT
AGAAtaattttaaacaaattctTCATATCAGGTACAAcagtttccaaaaa
aaatttgtcaatgAAAATGTCTCCACAGATTTCAAAGATTATCATATGAC
ATAAAGTAATAAAGCGAAATGATACAAGGATATGAAATAGAGGATTCACT
AACCATGCTGACCTTCAGGAGTCAGTGATTAAAAAGAATGTTCATGCGTT
TCTATACTTTCTTTACGAGACCGAAACTTTTTGAGCACCCGGCTGAGAAA
ACTTTTAACttaaaaaccgggggtcaaactATCATATTTCTAGTCATTTT
GAACCCCGGATTGTAGACTTTTTATATAGAGAAGAAATAAATTCAGGGGG
TACCGCTCCAAAGAGAAAATCACCTTCCATTTTGAAAGATGGCGGCGCCG
GTCACAGtTCCAAGGAATTTCCGCCTTTTGGAGGAATTAGAAGAAGGACA
GAAAGGAGGTGATGGCACTGTTAGTTGGGGTCTGGAAAATGATGATGACA
TGGAGTTAGTTCGATGGACTGGTATGATCCTTGGCCCTCCAAGAACAGTA
TTCGAAAACAGAATTTACAACTTGTCACTGGTGTGTGGCCAGAAATACCC
CAACGAAGTACCTACTGTGAGATTCACTACACGTGTAAACATGAGTTGTG
TGGATAGCGCTGGAAAGGTTGAAGCCAAATTAGTGGGGGTTCTGGCCAAA
TGGCAAAGGACGTATACCATTAAAACTGTTCTCACAGAGTTGAGGAGGAT
TATGACCGCAAAGGAGAATTGTAAATTATCCCAACCACCAGAGGGATCTT
CATATTAGAGCGAAGCTGGGCTTCACCATTACAATTTCTTATAAAGACTC
ACTTTGTAGATGATAATTCGAGCGTTGGGTGAAACTGTTAGGAGATGCAT
GGGGATAGAGCCCTGCGTTTTACCGGACACGGACATTCTCCTTTGGAAAA
CAACGTACGAACATTACTGTAAAAGGAATGGaattgaaatttcagaaaaa
acctTCGTATTTGCAATTTTctttagaattttatttttaaatcaatttag
atTCTACTGTTTTTTTTCTAGCCTTTTTTTCTATTGACTTTTCCATATTA
TAATTCCGTGCTTTTCTTAGTTAAATTATGTGCTGATTTTGGCCAATTGT
CAATACTTGATGAGTACACttaatttcttttattctttaattAGAAATTA
CATCAAGTAAATCATGAACATTTGATTCACCGAATAGACTCGTCAACGTA
ACTCAAAATTACTGAAACAGAATGGCTTCAAATTTGGAGAAGTAAACTTT
AAATATAGGGTAAATTGAAATCATCAGTATTTAGCATATAAAGTTATCAT
TATTGTGTTTGTGTATAGTTCATTGTCACAATAAATTAATGACAATACAA
TTATTCCATTTTAAAGTCCTTCAAATACTTTGGTGAACAAACTTTCACGA
ACAGAAATTTTGCTTAAATGAATTGCAAAATATCTTCAACTCCTTTCGCC
GAAATTAATGTTGTAAACTTCCCAATTTAATTTAGGCTTCTGATCATCCT
ctagcaaaaaaagtttcaggtctgcgaatcagactacCTTGGTCGTGGAA
CTTTCTAAGCTTTAGTATGTTCCCAGTTTCCGTTAATAATGTCTCACTTT
AGCTGTTTTCTTGCAatcttttattttgactttttatctAGCAATGTCAG
AATATTTATCAAACAAATCTTGTGTAGCGAAAActagagaaaatgaaaaa
actagAGTAAAAActtaagttttgagaatttttcgacCCACCCCGCCTTA
TTCCAAACTCCCCGTTTATTAGGAACCCGAGAGTATATTAAAAGCTCTTT
TAACCCgagcaacaaaaaattttcgataacgtttgaaatctttattcatt
ttcaaaaaacgaCGATGTCATCAATGAGGccgaaattttcaccaaagatg
gcCATTCATATTTAGTACacactttcaaaatttcaagtttgacAATAGGA
CCCCCCTCTAatatttttttcgctttattcttttttgctcaaattttgtg
agACAACTCCGTGTGACAtgtatttttggggaaaaatggcgaaattcTTC
AAATTAAATTCGCAAAGCATACAGTAGTTTACGACACAATAAACTTGTTT
TGAATCATGAAACATCCTTGGG

Run BLAST on NCBI

transcript from alignment at sc0000130:517787..528497+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011555 ID=TCONS_00011555|Name=TCONS_00011555|organism=Clytia hemisphaerica|type=transcript|length=10711bp|location=Sequence derived from alignment at sc0000130:517787..528497+ (Clytia hemisphaerica)
cccagactgacaAAATGGCGGGGAAAGGGGTCAATCTTGAAGTCACTCAA
CATGCCTAAAGTGAACAAAAACCAAACATTTCCttcgttcttataaatag
ctattgtattctaacaaaggctttattaatttgacctccgaacagaaaca
gccacATCTAGTATCTAGTTCAATTTCAACTGTTTTGAAGAGGAAGGGGG
AAGAGAGGTTTTTTTTATCAACTGCTGTTTGAAAACTTCATTTATGGCAC
TTTAACTTTCATGAAGTACATTTGTGCAATCACTTCACCAATTTTTAAAT
TCTTAGGCCACGGTGACAAATAAGTTGTGTTTGCGTcctccgaccgactc
actttttatcttaaaaatctGACCCTTTTCTAGTCGGAAAGGGCGatatt
attaaaataattttgtagaTGCAGCATAGCCAGCGTTTTGATCATTGAGT
GTTTTTAAGATTTCTATCCACaattttctgaagattttttgtgttaaaag
gCACTAATGCTTTTTGAGCGGTCGCGACGATATGCAAAATAATTGCATTA
CAGATGATTCTTGTCACCTGAACAAACCTTTGCTCAGAGTGCATCTTGTT
GATGATTTTAACACAGCTCGACTGCCTATATTGAGAGCACATTTTTCAGA
TGGTTAAAGATATGCCAAGAAGCGACCGACCAAATCACATTTTGGGGCTG
TAAATGACACGAACACAAGTTGTTGGTGACCCAGGCCTTAGTCTTAGTAA
GGCTTAAGAAATAAATTGAGGGTCCCTTTAAAGGATTGATATTAAAGTTG
CAATCAGAAGGTTTTCTTTAGAGAACTGAAGTCCCATCTGAAAAAGCCCC
CTTCAGTTACACAAAATATAAAAGGTAAATCAAATTGTATACATACTCTT
GACTGATTAACTACATTGGCGATGACAACAAGTTTTCCATCGTATTTTCC
TCCATTGACAAGTGTCACACGTCCGGCTTCTACAAACTTGGTGAAACCCT
AGAAtaattttaaacaaattctTCATATCAGGTACAAcagtttccaaaaa
aaatttgtcaatgAAAATGTCTCCACAGATTTCAAAGATTATCATATGAC
ATAAAGTAATAAAGCGAAATGATACAAGGATATGAAATAGAGGATTCACT
AACCATGCTGACCTTCAGGAGTCAGTGATTAAAAAGAATGTTCATGCGTT
TCTATACTTTCTTTACGAGACCGAAACTTTTTGAGCACCCGGCTGAGAAA
ACTTTTAACttaaaaaccgggggtcaaactATCATATTTCTAGTCATTTT
GAACCCCGGATTGTAGACTTTTTATATAGAGAAGAAATAAATTCAGGGGG
TACCGCTCCAAAGAGAAAATCACCTTCCATTTTGAAAGATGGCGGCGCCG
GTCACAGGTAAgcttcaattttcaatttcaatttcaatatctttttataA
CAGTTAAAAATGAGCTAAAAGATACAATTCcatgaataaaaatatcctat
AAGAGGATTTCAAAGCTATTCACAGTAAAAATAACCTATTATGGAATATA
GGTTACAAGGAAAAACATAATATATACGTTATTTTACAGTTTactattaa
aaacaaaatataaacagGGAAGAAGGACTATATAgattgtcccatgaaac
aactAAGAGAAAAAAAGCATTTCACCAATAAAATGTGAATTTAGAAATAC
TATATGTTATGTGGATAAAAAGCTCCACAAGGTTCAACAACCACAAGGTG
TCAATCAAAATTATATATAAATCAAATGTCTatataaatcaaaaatgtct
AGAAATCCCTAGAAATATAAGAGATTATTTactcatttttcaaatctttc
ttcaAATGAGTAGAGAAAGCTGTAGAAGAGTACTCAGCTAATTTATAACA
ATTCCTATGGTTCCAGAACTGAGGCCCATGGAACATTAGCGGACANGGCG
TCGTTGCAGTAAACGCTTTGTATTCTGTTTGCAAGATAACTTCGAAACCA
TGATAGAACAGGACCCCTTATTccaattttttcgattttttttagcAGTA
TTGCATGATTAACTNAGATTCATTAATTCTACCCAAGCCATTGGTTACAG
GGGAACCCCATGAAGTTATACCGTATGTCAGATGTGAGTTCACTAAGGCA
TAAAAAAGAGATATCATATTCTTTCTAGGAAGAAACCAGCCAACTTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTAGATA
AAATTTGTGAGATGTAGGATTGCACAAGAGGTAGACTTACCTTTCTGGAA
CCCATATTGaccatcaaataaaattttgttcTTGTCTAGAAATTCAGTAA
TTCTCTCATGGACAATTTTCTCAAAGAtcttatcgaataatggaaggACT
GATATCGGTCTGTAGTTTTTTATATCCGTCTTATTCCCACTTTTGAAAAG
AGGTGTAACTTTTGCATGTTTCAGAAGTCCCGGGAAGACACCTGTGGACA
GAGATTTGTTGATTAGTATTGCAAGTGGATTGGAAATTAGcttagcaaat
ttttttttacagattcCACTTTTTGAGGTCCAACTATTAAAGCCATGTAT
TCAACGATTCTTTATCTCGACTATAGAAAGCCTCCAAATCTTGGACTGCA
TTCCTTTTACTTGTTTTGTCAATGAAGTCCATCCCCAATAAATGTCATTT
TCAATCGAAATGGCatgggcagttccagaaaaaatccataACACCCCTGT
GGTGTGGACGACagagatttttcgatttttttttcacttgaacatcctta
aaaaataaaaaaagaactcTAAGGTAAAATCCATGTCGCCCACAGGGGGC
AGCAGACTATAACTGGAACTGCCCAATGTGACACAGCAAATCTCAAGTCT
CTGAAACATACAGTAGGGAATATGTTAATGCCCCCACCAGACCAAAAAGG
GCCCAACGAATAGGATAGGATTTTGAACGCGAATAATCTTTGACAAACAG
CTGAAATAAACACAAATATCAAGTGTTACAATCACTAACATAAAATAACC
TAAGCTAAGCAAATATATACAGGCAGTCAGTGTGGTAGACGTGCCAGAAA
ATCcgaacaaaatttcaaaaacgcCTTAGTGAGAAATttagaaatccaaa
aaaataggCAAGAAATAGGTAGGCAGAGAATGAAGgctaaggcggcaatc
acaaatatcttcatttcgcgtcctcgttggatttaaaaagtgagtcggtc
agtcggccggtcggtagtaaaaatttttgggttttctttaAGTTGGTCTG
CGAGGCGGTAAAAGGTAAAAGGGCGTTAACTGAGGCGGCAGAAGGCCCAA
TCGCGTGTATGTTTTGCAtggtttcagattatgaaatttAAACACTGTGA
CCTTTGACACATAATGGCacgtgtaatgataaacaaagttaaaatgctgc
gaatgcgctagaaatcgctcacaaaaattggcaaaaataaaatttttgag
caaaggaaacgtcatcaaaacaaaaagtccaAAGAATTTACCGACTCTCC
GActcaattttactcaattttatGGAGACGGTCGGGCGACgcaaaacgaa
gatatttgtgattgccgcctaagtTATATTATAATTATAATATACTATAT
AACAATTATAGTGATTGTTATAGGGAGGCTATATACAAAACCGAAATCCA
AAAATTTCTTACTAAAATCACTGTCTAAAAAGCACTAGATGTTACCACCC
AACACATCATATTATTTGGATATCTTCTCTAGGGGTATCCTTCAAATTTC
TTCAGCAAGCGGCGGTGGGAAACAGTATCGAAGGCTAGTAAAATCCAAAT
ACttcaagggaagaaattttggtgggaatttgatttggcggatgaattga
aaaatcaaattttgcgggaattttATTTGGCGGATGAAGGACATTTTAGC
CATTAAtaagaaaaaacctgttttaaggcctgaaatagcacacatttggg
gaataaatacaataatttaaatttggcgggaatttaatttggcggaaggt
ttgaaaatttaaatttggtgggaacttactttggcggattttgaccaaat
ttctcccctatgtgttcacctttcttgacacattctctttaattgatcat
atctttagaacaacaaatttttatatatcaaaagtatatattttctgaaa
gccaataatattctctttctaatggtaaaagtttcagctgaatttaaaaa
actgggcaggatataattatgatcttaagaattttgaccttacctacttc
aaagaagttaaagtcacccatagcttttgaattttgaaaaaataatttcg
atactatgttcccaatagattgaactaaaaaagtgtcttgggattttttt
tgggattgacttcaactctttaaatcctaagttctgtaaaaatatcgata
aaaaagtaaatttaaatgtgattttttcagttatctgtaaattgaggaaa
aacaactcggttagaaataaaatcctaagacactttNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttctctcttttgt
ctttgatgtttccgaaagagacaattatttgagtaaataatccatcataa
gacgagctttgttttgaaatttaaatggttataactccggattaaaaaaa
gattttaagatcgcgattttaccaaaatgaaatccagtaacttttcttcc
actttgactgaaaaaaaaatttttgacaaaaaatcggaaaaaaggtgtac
acataccttaaggtATATATTGTATCAACTACCGTGAGTGGtactaaatc
cgacagccctgcctaaatccaaccccccaaataactgctatgaaaaaaaa
ttctatgtttacaaacattccctcttcaagttgaacaataaactattgga
AGAAATctagaaacaaaacatctaacaagatgactataatgtcaagatgt
caattaatgtgatcaaaaaagtgcgagttgtaaaaataattacctctatt
attctgaatctgttgcttgtgtttaaaacgttaacaattttgtaataaaa
aattatgttttgtataagaagcaattattgttatttgaaCCATTTAGTTA
AGTGTATCAAACctttcagtttagttgacactttggtatcttcattgcgt
cacagcgaaagatttgttttcattttgtatctttgaaagaccccattgga
tttaggcagggctgtcggatttaggaccactcacggtactttACCATTAG
CAATGCATTCGCAACACTTATTCAAGTAGTTCAGGAGTTGATTGGTGACT
GATGAAGCCACATTGTTTATTTTTACAATAGCTTTTGATCTTGCAGATGA
TTCATGATAGGCTTCCTTAGAAATGATTCCATCAATTTACAGACAACAAA
GGTCAGGCTGACTTGTCTATAGTTAATTGCTAGAAATAAAAATGCAATGC
taaattttgaagcaaaataaaaaaagcaaagcaaaattttgaagcaaaat
aaaagaattgaaagGGCTTTTCAAACCAATTTTGACTTTTGTGATCTTAT
TAAGTTTTGGGGCATTGTACTGTAAAATTTGGaatgatggaaatgtatgc
ttgtaataatggaAAGGGCAGTCTAGATCAAACttctatatcaggattag
aaacttgGCTAATGTTACCTCTTTTCTCTTTCCCTTTGcgacaatacaat
gctgacaaatTGACACGACATATTGACATTTATGTAATTGGTGTAATCCC
TGTCATGAAGTTTATATTGAAATATGcaacaaaaatgaaagtggtctctt
ctactgatggCTTTCCGGCACTCCTTCACagactgtttatcaaatttcca
ccaatgagatttCCGCATTTCACACAGCCCTCTTTTTTGGCACTTGTgcc
ctctcagtgccttgcacaaaGGGCAGCTATAAAATCTCTCACCCTTCATA
TTTGTTTCAGTCCAtgatcctaaggcttaggttttttctcatcttcaatt
ctctgaagaaagcgggaatgcaatgcaagagttagattgtcaacaaagtg
ccataaaatcattgaataaaagaagaacttcaaatcttaaatattttcat
tttgaagaattggtgcaaaaaaagtgaaacatggaaaagtttcatttttt
attggtttaatCGAAAAAGGGAATTTGGAATACTTTTTtctatgtttggt
tttttgcacaaacccctgtaactatagGTGAGCCTCCCGNgatttggaaa
acttttttttatgtttGGTTTTTTGCACAAGCCCCTGTAACTATAGGCGA
GCCTCCCGTTGCTGAGatattggcttgaaatcgaaactgaaaccactgaa
aatgaaagtaaaatggGCCCGTACTCAAAATCTTGATATATGAGTTTAAG
GGAGGGAGAAATAGTAGGCTTTATCATTTGAGCATAACATCTTCTTTATC
TTAATTGAACGTATCTAAAAGCCTAATCTCTTTACAGTACAGTAGTACAG
AAGAACCCTGGTTTAATAGAGACTCCAGAGTATATCCTTGCTGCATTTGA
AGGGATTCTGTTCAAAGGAACAACTTTCCCTGAGGAAATACAGGAAaatg
ggtttgtttacctccctaGGACAAACACTAGAGAGCAACAAAATATGTat
gcaaaagtttttgaaattacaggaaaagtgtattttttatgttcagaaat
ttcaaagacATTACCAAGGAAGTAGGCTAAATTTCTTTGAGATCACGTAT
CAAATATCTATACTGAAAACTATGCCTTGATCTTTCTAGTTTGAAAGGTC
ATTCGGTCAGAAAAATCTAATTGGACTCAAAGACTTTTATAGGATAAATT
GACTctgaaaaactgttaaaaatgttGGTGAAACTTTAAAGTATGATCGG
TCAAACTTTACTGAATTTGTTGAATTAGTAGAACAGTTTGTGTAATGAAT
TTTGTGGTTTTCTAAATCATGTtatttgtctattatttcatCTGTTTGAT
TTTAATTTGGATTAATCACtatcaaaacaataaattagttttgtctttat
tttgtttttcagtTCCAAGGAATTTCCGCCTTTTGGAGGAATTAGAAGAA
GGACAGAAAGGAGGTGATGGCACTGTTAGTTGGGGTCTGGAAAATGATGA
TGACATGGAGTTAGTTCGATGGACTGGTATGATCCTTGGCCCTCCAAGAG
TGAGTACACACGCGGGCACTAGGCTTTccttttaaaacattaaaaaactg
CGCGCAATCTTAAATTTCAATGGCAGGGAAGGGCTAATTCCAGAGTAATT
GCCTTGGACACAACAATTGCCCCTAATTGTAACGTTTACAACAATTGAGA
TTTTTTATAAAGAAGAAATATATTTCTATTAGAAAAGAGGGGAGCAGTTG
TCTTGGGTAGGGGACTATACCCCTTCAAAATCGTTGACTTTCACATCTTT
TCATtcatcattaaaatatttatatttgtaAGTTACGAACCTTgaatttt
atccatttttacAACAGACAGTATTCGAAAACAGAATTTACAACTTGTCA
CTGGTGTGTGGCCAGAAATACCCCAACGAAGTACCTACTGTGAGATTCAC
TACACGTGTAAACATGAGTTGTGTGGATAGCGCTGGAAAGGTTAGTATTT
TGAAATCGAACTCCGAggtctttccttttttttggttttggagccattga
aaaggaaaatagtTTGTAGTTAACACTTTAAGGACCGGACAGCCCTTAAA
TATAAAGTTCACTTAGCATACTTTCCTCACAATGCAATTGGACTTGACCG
AACATGATGACAATGTATTGATTGTTGTTCCATTTTTCTAGGTTGAAGCC
AAATTAGTGGGGGTTCTGGCCAAATGGCAAAGGACGTATACCATTAAAAC
TGTTCTCACAGAGTTGAGGAGGTGAGAGCATTTTGTTTAATCTCAAAAGA
TTGGTAACTCTTTGATACCTTATAAACTTGAAAGTATTCCTCCCAAGACA
AGCACATTCCAGCTCTTtgctttttgattttctttcacTATTTTTAAAGG
TTACTTTTTCCACCCTATTTTTTATAACAAATTAAGAAATTTGTTGAATA
TAAGAACTAAAGTCGAAGAACATGAACTTTTGTATAATTgtgctatgatc
ttcatttttatatcataaaaacttttaaatcttaGAACGTTGTCATAAAT
gcttaaaaataataaatattccAAGAATAATGCATTTTTAAAGGgctctt
tttgttgtttttgatggttttggaAGTCAACCAGTGATAAGCTTTAGGCT
ATATCTTTCGATAgataaaaaaatcactcgtgtgaaaatTATAAATATAG
CTCtgttattgaagaagttgattttttcttcttcactttcaatCTTAATT
TTCcgacattttttgattttttttgtttttgataatacACCACTCTTGAA
TATCTCTCTAACAAGCACTAAAACATTATTCAATTCGAAttctctatcaa
aagttacggACTTTTTTCgtctccgctgcagattatattgagacagactt
caGAACCATAATGGAATTTGAATGGTTTAAATTTCATGGGCTATATAAAT
AGTTTGCTGTTTAgtctattttattttcttactcAGGATTATGACCGCAA
AGGAGAATTGTAAATTATCCCAACCACCAGAGGGATCTTCATATTAGAGC
GAAGCTGGGCTTCACCATTACAATTTCTTATAAAGACTCACTTTGTAGAT
GATAATTCGAGCGTTGGGTGAAACTGTTAGGAGATGCATGGGGATAGAGC
CCTGCGTTTTACCGGACACGGACATTCTCCTTTGGAAAACAACGTACGAA
CATTACTGTAAAAGGAATGGaattgaaatttcagaaaaaacctTCGTATT
TGCAATTTTctttagaattttatttttaaatcaatttagatTCTACTGTT
TTTTTTCTAGCCTTTTTTTCTATTGACTTTTCCATATTATAATTCCGTGC
TTTTCTTAGTTAAATTATGTGCTGATTTTGGCCAATTGTCAATACTTGAT
GAGTACACttaatttcttttattctttaattAGAAATTACATCAAGTAAA
TCATGAACATTTGATTCACCGAATAGACTCGTCAACGTAACTCAAAATTA
CTGAAACAGAATGGCTTCAAATTTGGAGAAGTAAACTTTAAATATAGGGT
AAATTGAAATCATCAGTATTTAGCATATAAAGTTATCATTATTGTGTTTG
TGTATAGTTCATTGTCACAATAAATTAATGACAATACAATTATTCCATTT
TAAAGTCCTTCAAATACTTTGGTGAACAAACTTTCACGAACAGAAATTTT
GCTTAAATGAATTGCAAAATATCTTCAACTCCTTTCGCCGAAATTAATGT
TGTAAACTTCCCAATTTAATTTAGGCTTCTGATCATCCTctagcaaaaaa
agtttcaggtctgcgaatcagactacCTTGGTCGTGGAACTTTCTAAGCT
TTAGTATGTTCCCAGTTTCCGTTAATAATGTCTCACTTTAGCTGTTTTCT
TGCAatcttttattttgactttttatctAGCAATGTCAGAATATTTATCA
AACAAATCTTGTGTAGCGAAAActagagaaaatgaaaaaactagAGTAAA
AActtaagttttgagaatttttcgacCCACCCCGCCTTATTCCAAACTCC
CCGTTTATTAGGAACCCGAGAGTATATTAAAAGCTCTTTTAACCCgagca
acaaaaaattttcgataacgtttgaaatctttattcattttcaaaaaacg
aCGATGTCATCAATGAGGccgaaattttcaccaaagatggcCATTCATAT
TTAGTACacactttcaaaatttcaagtttgacAATAGGACCCCCCTCTAa
tatttttttcgctttattcttttttgctcaaattttgtgagACAACTCCG
TGTGACAtgtatttttggggaaaaatggcgaaattcTTCAAATTAAATTC
GCAAAGCATACAGTAGTTTACGACACAATAAACTTGTTTTGAATCATGAA
ACATCCTTGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006476	XLOC_006476	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000130	supercontig	sc0000130:517787..528497 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
62.9519	65.2459	52.8574	52.0795	39.6685	30.5046	46.4287	41.7242	39.5241	38.5469	37.0436	32.1343	30.7557	29.6625	32.7867	36.6109	34.4704	37.1241	19.2237	19.4892	37.8358	36.6301	39.6468	38.8842	26.7985	30.3597	44.4998	43.6169	36.0523	34.4313

Blast

[Close]

BLAST of TCONS_00011555 vs. Swiss-Prot (Human)
Match: UB2V2 (Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo sapiens GN=UBE2V2 PE=1 SV=4)

HSP 1 Score: 179.104 bits (453), Expect = 3.513e-51
Identity = 92/137 (67.15%), Postives = 113/137 (82.48%), Query Frame = 3

Query: 1401 VTVPRNFRXXXXXXXGQKG-GDGTVSWGLENDDDMELVRWTGMILGPPRTVFENRIYNLSLVCGQKYPNEVPTVRFTTRVNMSCV-DSAGKVEAKLVGVLAKWQRTYTIKTVLTELRRIMTAKENCKLSQPPEGSSY 1805
            V VPRNFRLLEELEEGQKG GDGTVSWGLE+D+DM L RWTGMI+GPPRT +ENRIY+L + CG KYP   P+VRF T++NM+ + +S+G V+A+ + VLAKWQ +Y+IK VL ELRR+M +KEN KL QPPEG +Y
Sbjct:    7 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTY 143

The following BLAST results are available for this feature:

BLAST of TCONS_00011555 vs. Swiss-Prot (Human)

BLAST of TCONS_00011555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UB2V2	3.513e-51	67.15	Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo ...	[more]

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TCONS_00011555 (transcript) - C. hemisphaerica