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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011437 ID=TCONS_00011437|Name=TCONS_00011437|organism=Clytia hemisphaerica|type=transcript|length=6426bpRun BLAST on NCBI protein sequence of TCONS_00011437-protein >TCONS_00011437-protein ID=TCONS_00011437-protein|Name=TCONS_00011437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1393bp MASDVPAFLEVGTPVSAKFKGAFCEATIKSVKKLVKFKVQYKDGTGSSVVRun BLAST on NCBI transcript from alignment at sc0000128:133954..156501+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011437 ID=TCONS_00011437|Name=TCONS_00011437|organism=Clytia hemisphaerica|type=transcript|length=22548bp|location=Sequence derived from alignment at sc0000128:133954..156501+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000128:133954..156501+ >TCONS_00011437 ID=TCONS_00011437|Name=TCONS_00011437|organism=Clytia hemisphaerica|type=CDS|length=79458bp|location=Sequence derived from alignment at sc0000128:133954..156501+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011437 vs. Swiss-Prot (Human)
Match: ARI4B (AT-rich interactive domain-containing protein 4B OS=Homo sapiens GN=ARID4B PE=1 SV=2) HSP 1 Score: 241.506 bits (615), Expect = 3.710e-64 Identity = 155/403 (38.46%), Postives = 226/403 (56.08%), Query Frame = 2
Query: 209 ASDVPAFLEVGTPVSAKFKGAFCEATIKSVKKLVKFKVQYKDGTGSSVVQDDTIEGEYKLGSLVLVKQDDGEKKPATIQKMNDHSYYTVVFDDGDERTLKRTNVVVMGERHFLEHENLDNLPLTDPENFLSPVV---LSSEXXXXXXXSAANLEEEDSDSDNKRELHKEFLGKVVC---IEVGDRKRSWFPALGVKHHGSH----SESQVFVQSFKDGKRTLVNRDDVKEFSKTRDPLQSFLKGESRPDPVLKSAVEKAVAYKDMGELPKGWNI-----------------LDTIDEKEESSDEDLPSTPVLSAEDKSFHETLYSFLSKQGTNISKPPFVNNQGVNLHKFYKLVQEEYGGMDDI-TNQQWRSIYKQLGLRNIHTTASFNMKNLYKKYLQPWEE 1333
A D P +L VGT VSAK++GAFCEA IK+ K+LVK KV ++ + + VQDD I+G K+G++V VK DG + A I K+ D S+YTVVFDDGDE+TL+R+++ + GERHF E E LD LPLT+PE+F +PV+ + +R + + ++ R+ E LGKVVC I + +K WFPAL V S + + V+SFKDGK T V R DV E + P +PD VLK A E+A+ + +P W D EKE++S E+ E ++F + LY F+ +GT I+K P + + +NL K ++LV + GG D+I + W+ +Y+ LG+ +++ A +N+K YKKYL +EE
Sbjct: 3 ALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPLKVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETLDQLPLTNPEHFGTPVIGKKTNRGRRSNHIPEEESSSSSSDEDEDDRKQIDELLGKVVCVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDTAP---------KPDAVLKQAFEQALEFHKSRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEEIEPFPEERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVH-KLGGFDNIESGAVWKQVYQDLGIPVLNSAAGYNVKCAYKKYLYGFEE 395 The following BLAST results are available for this feature:
BLAST of TCONS_00011437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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