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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011162 ID=TCONS_00011162|Name=TCONS_00011162|organism=Clytia hemisphaerica|type=transcript|length=1187bp
AGCCATTTTTATCTATGCTAGAGAAACTGAGATTAATATTTAGGATAGCG
CTTTCGATGTGGAACTTTCGATTTCACTTTTGCTGTGATTTTTCGGTGCT
GTGCAGACATGCACATGGATTACCTGagaatttctgaattttttgcATTT
AAATAGATATATTTCAGACAATAAAGAACAGATATGGCTCGAAATAATGC
CAACAATGCAAGGACAGATATTGACAAGTACCGAAAGCAGCTTGgaaaac
aagaaTTCAAAGGACGAAACAAAAAGAACACTCTGGCAGTAAAAGCTCGT
GCTCAAGCAAGGAAACAAGAATCTCCAATTAAGactGGTCTTTATGCTAT
ATTAGCCCTGGTGATGTTATTAGCAATGGTGTATATATTATTTTACTTCG
GTCTTGGAAAatgaatttcatttcaatatcATTGTACAAGTGAATacatc
aaataaattttatagATCTTATTAAATTATTGTTTATATTTTAATAAACA
TTAATTATGTTTTCTAAGAATTGTTAGTACAAAATTAAATGATATTATAT
TTATATAGATTTTATTATGCTAAATAGTTACACAATATTTGtatattttg
tgaaatttgatcCCATTTTATGTCAAGTTAAAGTtggaatttgaaaatga
aaattcctgTTTTAAATGTGCTCGCATTTAAAAGCAAGGATGGAAAACAA
GGGGAAGTGTTTTGAACGGATAGGTAGGATTCGACGTAATTGCCAAAATT
TTCGGACGGGTGGGGATGTGATTTTCGGTGGTGCAATTTTTCTTGGCAAA
GAAATTAACAGAATGACGGAAGCTGCTACGCTCTTCAAAACCCTcaccat
aaaaaaatataaggtGTTACTGTTTTGGTAGGTTAAGGAACTATACTATA
CGTCTCCTTTCATTTGCTTATGCTTACACAGCATATTTGTTGAACAAAAG
AAGAACTTCTTTCTCCCAACCAACGCTGCGCATATCAGCCATAATAATTC
AATAATTCATTATCTTTAATAAGTTGTTATTCGTATTGTATTTGTATTTT
TAGAATGAAGATATTGACGACAACCTTTATATACTGTTTTTAAATTcgta
atatattttattataACTACTTTTAAAATTTGTATCACTAGTTATTATCC
TGGTTAATTCCACAAATACCTATTGAATTAGTTGTTG Run BLAST on NCBI transcript from alignment at sc0000122:10605..17459+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011162 ID=TCONS_00011162|Name=TCONS_00011162|organism=Clytia hemisphaerica|type=transcript|length=6855bp|location=Sequence derived from alignment at sc0000122:10605..17459+ (Clytia hemisphaerica)
AGCCATTTTTATCTATGCTAGAGAAACTGAGATTAATATTTAGGATAGCG
CTTTCGATGTGGAACTTTCGATTTCACTTTTGCTGTGATTTTTCGGTGCT
GTGCAGACATGCACATGGATTACCTGagaatttctgaattttttgcATTT
AAATAGATATATTTCAGACAATAAAGAACAGATATGGCTCGAAATAATGC
CAACAATGCAAGGACAGATATTGACAAGTACCGAAAGCAGCTTGGTAAGT
TAAGGTCTTGCTTTTGGAAAAGGAAAGGAAATTTCCGTGTTTTGTCCTGT
GTcgaaaattattatttaaaaGTTAAACTAGGCAAAGACAAAAGTACTGT
CTGGTGTCCTATATTGCGCAAATTCTTGACAAACCCTGGACTTCTCCAAC
TTCTCCACCAGATGCACTGGTGACTGTCAGACTAGATCTAAAAAGCTCTG
AAACAACACATCTAATAAGgcggtcatcaaaaaattgttctattcgcgtc
atccgcccgcatcatattttccCCTGATTTTCTGGTGCGGAGATTCggga
aaaaatctggaaaaagaaaattgttcttttgacGTATATATACCTAGCTT
TTTTCTTGATCGCTTTCGCGGCCATCCGGAAATTATTCTGTTTGTGTCAC
CACCTGCCCCCAGCCAACTTGCAACTTAtagaagaaatttaaaaaaaccc
gggaatttTTCCGATCGCCCATACGcctgcatgcatttttaacacctgtt
gcgacgcgaacagaacaatttttcgatggtcgccTTTAAATGAAAACCAG
AATaggattcttcaatgggaatcaaaactataaagtgcagttacaaacat
caatttgtcagacagttagccacactagcgtcccgccaaaatgcgtatca
aagattaatgcagcgaaagcgctatatcgtttacttgactctcaagcaaa
aaaatgcgccgcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNggccttaaaaatcgaagcgctgtct
cgggaattgaatgacaaattttagttggttgattttggctgctgcacgtt
ttattttgtttccaacttttagTTTCAATTATtattgtcttgcaaacttg
attcaggtaactctcatccttgttgttgaaatgtatcctgtagatgactg
atgttttttttctttctgaaagctagatttcctagtgtgactaactgtca
gatctaacaaaattaataacggcactgtcatcattgacaataaaacaaac
aattttctgtcaagagccttgtaaacaaggaccctcccggcgctccggaa
actTCCAGAGTTTTCCGGAGCagctaaaaaaaaacaatattttttctgcG
GAAAAGTCTGGAGCTCTTCCGGTGCTTCCTCCGTAGCaagtaatttttat
cattttctaaaaaaccctttaaacatggttacaaaaaatatttgtcccca
GTTTCAGTgaagctggaacctcgatattccaggattagaaaaagctatat
ctgttttcttttttctttaaagaatcaacaagccatcgacatcgataaat
tacacacattccctcagaaacttttaaaattatctgccattatgactttc
ttgaagccgttccaaaattaaccaatcgggttaggtatcggaattcctat
gggagttcttttccgagatttgtaaaatagcttagtcagcaaaaaacttt
tcccgggggtttgaggaataaacagaactgttatcgtttgttttttattt
aaccatatattcaaatttgcactcaaaaatacttaaatagaTAAGTTAAt
gatattcaatatactatttgtatctctcagaaaataaacacttacagaac
aacATAGTTTNaatattcaatatactatttgtatcgctcagaaaataaac
acttacagtaCAGAacaacatagtttatcatttggaatacccccgtgttT
AGACCATTGtgtcgtgggcgcaaaatagggcagaaactaagtagcaccct
cagtgcaagattgccgcctcatctttatttgcCCGCGCGAAaacgcgagc
taatcatttttttctctggCGCTCAatgggaaaaggaaagtgatcgatat
tctttgaaggaaaaacgtcagagacaaacccaaagaccaaaagatgtatt
ttgttgttgagaatcgatcctgtgcaagatgaaaaaatttctgctttcgg
aacgctgaaaaactttaatttcgatcttccttaaggtaaagaggctgcaa
gatttgggttagcgaggcaaaaattgctaaaaaattggtaaaatcgtaat
cctcaaaaatcgaaggtCCAGCCTCACTGAGTTTATGGACACTTTGGTCA
AATAAAATACTTTAAGGATGATGGTTCAgccaatgaaattgaatttgtga
TTTAGCTCTATTCCAAAGCATCACTGGTCAAAATATTGAAACTACCATGA
GTCggctgatttttttaaaatatgcgCATGCACAGTTAGAGGGGAAGTGC
ACCAGAACGTTCTGGAGTTCCGCTGCAGACTGCCAATCACCAAAAATCGT
GCTCCGGAACACTGGAAGTACTCCGGAATCTTCTGGTGTTCAGCAGCACA
AAAAACAGCACTTTTTGCTCCGGACGTTTCCGGAGCCCCGGAAGGctcct
tgtaaacattccaacaacttccatcgaaatgatctatcacagctcagtca
accatttttagcgcggtccaaggattgagccgagCTAGCAGAGCGcccgc
gcgggtgaaaaacttcaatctgtcaatcattttctcaagcaaagagtacG
CAAAGGgattctagctttacaatagtgccgcggatcatcaatggatagta
ttcaattatcattatccctttattttcattcctagaacttatggaaaaat
ttgaatttgaaagatcttctatgtggcgtttttttgcaaacttcaaactg
atttttgtcccgtctttgcgggactttggcttaattGCTTGCTgtagcat
agggtacaaagtccaaacaagCGTTTCTctccgtaatttttgtatgaaga
gttaggtctatactgactGTGGGATCATTACTTTTTAATATAAAGTTata
tcaacgatgtaaaaataatagataaccaacttgccttgattctcaaaaaa
catccgtgttatggttgtaaaaatattaatgacattttgcatcgtaaaaa
gtgcaattaaataaaagcttgcttcatttgcaaccttctattggacagaa
tcgatcacgtgatgtatatttttccaaaatctgggttagaaaaagtgtat
tttcctataggcagcctcacaaatggaattttttaattagatattattgt
tctataaacattcatctgtttattttgtatcaggcaaccttcatgcactt
ttcattcgtgagatatcgcagtTCAAATCACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaaatttgcagtaaataa
caattcaattttctatcaattcagtggatgtcaaaaagtgtgtcaaaatc
tagctaaaagcataacacgcactgcacacagagctttttaataaagtgct
catttcaataggaaaacaatggttgttctcttgggagaagtgccttctag
aggtagttggttatctattatttttacatcgttggttatattgataattt
ttaaaagatgaaaACTTTTTTGGGATAAATGGGTCACATCTTAGGGCAGG
TTTCATATCTTAGGGCAGGGGGGCCAGGGGTCACAGCTGTCAACTTCACC
ACACcaaaatgggctattccagaaaatttcggTACCCCTGTCGGACGaca
tatatacattttaaaattttttgtagcctttgcaatatttttttcccaGC
GGCGGTCAgaaattccgatgaaaatccaaAATCCATTCTACCATCTACTC
TTTTTAGCTGTTTTAATCCAGACGCGATCAATTGAActtgtcaaaccaat
cgaacaatcgaactaatcgaactccatcaaATTCCATCGAActattaaag
tttgattaaaaaaattaatcgaacctaatcgaacgctcacaatttttgaa
gcaatagcagttcgatttgttcggtcagtaaaacttcgattagttcaatt
atattaaatcctcatatcttccatagcttgcaaaaactttatccTGCCAC
GtgattgccatttcgacagttcctGGACTTGACAGCCTAACGTTTATTGT
ACCTAGATATTTGTCTATcggaataaagtccgtagcccctccGTTGCAAT
TTGGCGCGCTGCCGAGTGGTGGAATCTACGCCCAAACAAACCACCTCTGG
CGTTAAAAGGATACAGGGAAAGTGTGTAATctgttatcggaagtaatttc
ccgatttacatttggtgaaaacttttgccctcagaAATCCCGTAATTGTC
TGCCCCAAGCCTTTCTAATTCAGATTAATCtacgtcagaaaaaaaattct
gggttcaggaaaaattccaagcactttggtCACTGGCCGTTTTTTGactt
agaaattgagttttagCCTTCGGAGTAACCATTTTGGGTGGTTGATGCGC
GCTACAGGCgctaaaaatttttcaaaacacccTCTAGGCAACTTATGAAG
GGTTTATTTTCAAGTATTAAATATTGTATTTGCgaaaataaaagtgattt
tgggTCACTACACAAACCTACAATACAAATTTTTCTGTTGTACCTTGTAA
ACAAACAACAATTGAAAATGTCTTTGACATTTGACAAAAAGTTGTTGTCA
AAACTCAAGTTGTTGTCTCTCAAATATTACTTAAAAAATGCCCAAACTGG
TGTTTTGTGACACTGCTTTAAACTCCTGCTACAGGATactattttaaaat
gaaaatttactaTGCTTTTGTctctcattttttttaaaccttttttattt
gtatcgaaaaaaggaaaacaagaaTTCAAAGGACGAAACAAAAAGAACAC
TCTGGCAGTAAAAGCTCGTGCTCAAGCAAGGAAACAAGAATCTCCAATTA
AGGTATAATAATGTGTATATACAATTTTAAATCTCTCTTAGAAACTTGGT
TTTTAGAAATTAAGTAAGGTTTAGGTAACCAGACATTGCCGGTTATCAAC
ACATGACTTTGAAAACTTTCTAAGTTTAAAGACAAGAAAAGGTTTGATGT
TTGTACATGATGAAATGGTTcctcttttttgaaaacttaaaactGATTCT
TGCTTTTTCCAAAATGTAGTAGGAATAATAAGATAAAACTTGTGTCAAAG
TACGAGTCATTTCAGGGCTTTAATATTAaatgctgtttttttttatttaa
gactGGTCTTTATGCTATATTAGCCCTGGTGATGTTATTAGCAATGGTGT
ATATATTATTTTACTTCGGTCTTGGAAAatgaatttcatttcaatatcAT
TGTACAAGTGAATacatcaaataaattttatagATCTTATTAAATTATTG
TTTATATTTTAATAAACATTAATTATGTTTTCTAAGAATTGTTAGTACAA
AATTAAATGATATTATATTTATATAGATTTTATTATGCTAAATAGTTACA
CAATATTTGtatattttgtgaaatttgatcCCATTTTATGTCAAGTTAAA
GTtggaatttgaaaatgaaaattcctgTTTTAAATGTGCTCGCATTTAAA
AGCAAGGATGGAAAACAAGGGGAAGTGTTTTGAACGGATAGGTAGGATTC
GACGTAATTGCCAAAATTTTCGGACGGGTGGGGATGTGATTTTCGGTGGT
GCAATTTTTCTTGGCAAAGAAATTAACAGAATGACGGAAGCTGCTACGCT
CTTCAAAACCCTcaccataaaaaaatataaggtGTTACTGTTTTGGTAGG
TTAAGGAACTATACTATACGTCTCCTTTCATTTGCTTATGCTTACACAGC
ATATTTGTTGAACAAAAGAAGAACTTCTTTCTCCCAACCAACGCTGCGCA
TATCAGCCATAATAATTCAATAATTCATTATCTTTAATAAGTTGTTATTC
GTATTGTATTTGTATTTTTAGAATGAAGATATTGACGACAACCTTTATAT
ACTGTTTTTAAATTcgtaatatattttattataACTACTTTTAAAATTTG
TATCACTAGTTATTATCCTGGTTAATTCCACAAATACCTATTGAATTAGT
TGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011162-exon-sc0000122-1491911889:10605..10848 | TCONS_00011162-exon-sc0000122-1491911889:10605..10848 | Clytia hemisphaerica | exon |
| TCONS_00011162-exon-sc0000122-1510915933:10605..10848 | TCONS_00011162-exon-sc0000122-1510915933:10605..10848 | Clytia hemisphaerica | exon |
| TCONS_00011162-exon-sc0000122-1575043694:10605..10848 | TCONS_00011162-exon-sc0000122-1575043694:10605..10848 | Clytia hemisphaerica | exon |
| TCONS_00011162-exon-sc0000122-1491911889:16218..16306 | TCONS_00011162-exon-sc0000122-1491911889:16218..16306 | Clytia hemisphaerica | exon |
| TCONS_00011162-exon-sc0000122-1510915933:16218..16306 | TCONS_00011162-exon-sc0000122-1510915933:16218..16306 | Clytia hemisphaerica | exon |
| TCONS_00011162-exon-sc0000122-1575043694:16218..16306 | TCONS_00011162-exon-sc0000122-1575043694:16218..16306 | Clytia hemisphaerica | exon |
| TCONS_00011162-exon-sc0000122-1491911889:16606..17459 | TCONS_00011162-exon-sc0000122-1491911889:16606..17459 | Clytia hemisphaerica | exon |
| TCONS_00011162-exon-sc0000122-1510915933:16606..17459 | TCONS_00011162-exon-sc0000122-1510915933:16606..17459 | Clytia hemisphaerica | exon |
| TCONS_00011162-exon-sc0000122-1575043694:16606..17459 | TCONS_00011162-exon-sc0000122-1575043694:16606..17459 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000122 | supercontig | sc0000122:10605..17459 + |
Blast
The following BLAST results are available for this feature:
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