XLOC_006258 (gene) - C. hemisphaerica

Overview
NameXLOC_006258
Unique NameXLOC_006258
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000122:10605..17459+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006258 ID=XLOC_006258|Name=XLOC_006258|organism=Clytia hemisphaerica|type=gene|length=6855bp|location=Sequence derived from alignment at sc0000122:10605..17459+ (Clytia hemisphaerica)
AGCCATTTTTATCTATGCTAGAGAAACTGAGATTAATATTTAGGATAGCG
CTTTCGATGTGGAACTTTCGATTTCACTTTTGCTGTGATTTTTCGGTGCT
GTGCAGACATGCACATGGATTACCTGagaatttctgaattttttgcATTT
AAATAGATATATTTCAGACAATAAAGAACAGATATGGCTCGAAATAATGC
CAACAATGCAAGGACAGATATTGACAAGTACCGAAAGCAGCTTGGTAAGT
TAAGGTCTTGCTTTTGGAAAAGGAAAGGAAATTTCCGTGTTTTGTCCTGT
GTcgaaaattattatttaaaaGTTAAACTAGGCAAAGACAAAAGTACTGT
CTGGTGTCCTATATTGCGCAAATTCTTGACAAACCCTGGACTTCTCCAAC
TTCTCCACCAGATGCACTGGTGACTGTCAGACTAGATCTAAAAAGCTCTG
AAACAACACATCTAATAAGgcggtcatcaaaaaattgttctattcgcgtc
atccgcccgcatcatattttccCCTGATTTTCTGGTGCGGAGATTCggga
aaaaatctggaaaaagaaaattgttcttttgacGTATATATACCTAGCTT
TTTTCTTGATCGCTTTCGCGGCCATCCGGAAATTATTCTGTTTGTGTCAC
CACCTGCCCCCAGCCAACTTGCAACTTAtagaagaaatttaaaaaaaccc
gggaatttTTCCGATCGCCCATACGcctgcatgcatttttaacacctgtt
gcgacgcgaacagaacaatttttcgatggtcgccTTTAAATGAAAACCAG
AATaggattcttcaatgggaatcaaaactataaagtgcagttacaaacat
caatttgtcagacagttagccacactagcgtcccgccaaaatgcgtatca
aagattaatgcagcgaaagcgctatatcgtttacttgactctcaagcaaa
aaaatgcgccgcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNggccttaaaaatcgaagcgctgtct
cgggaattgaatgacaaattttagttggttgattttggctgctgcacgtt
ttattttgtttccaacttttagTTTCAATTATtattgtcttgcaaacttg
attcaggtaactctcatccttgttgttgaaatgtatcctgtagatgactg
atgttttttttctttctgaaagctagatttcctagtgtgactaactgtca
gatctaacaaaattaataacggcactgtcatcattgacaataaaacaaac
aattttctgtcaagagccttgtaaacaaggaccctcccggcgctccggaa
actTCCAGAGTTTTCCGGAGCagctaaaaaaaaacaatattttttctgcG
GAAAAGTCTGGAGCTCTTCCGGTGCTTCCTCCGTAGCaagtaatttttat
cattttctaaaaaaccctttaaacatggttacaaaaaatatttgtcccca
GTTTCAGTgaagctggaacctcgatattccaggattagaaaaagctatat
ctgttttcttttttctttaaagaatcaacaagccatcgacatcgataaat
tacacacattccctcagaaacttttaaaattatctgccattatgactttc
ttgaagccgttccaaaattaaccaatcgggttaggtatcggaattcctat
gggagttcttttccgagatttgtaaaatagcttagtcagcaaaaaacttt
tcccgggggtttgaggaataaacagaactgttatcgtttgttttttattt
aaccatatattcaaatttgcactcaaaaatacttaaatagaTAAGTTAAt
gatattcaatatactatttgtatctctcagaaaataaacacttacagaac
aacATAGTTTNaatattcaatatactatttgtatcgctcagaaaataaac
acttacagtaCAGAacaacatagtttatcatttggaatacccccgtgttT
AGACCATTGtgtcgtgggcgcaaaatagggcagaaactaagtagcaccct
cagtgcaagattgccgcctcatctttatttgcCCGCGCGAAaacgcgagc
taatcatttttttctctggCGCTCAatgggaaaaggaaagtgatcgatat
tctttgaaggaaaaacgtcagagacaaacccaaagaccaaaagatgtatt
ttgttgttgagaatcgatcctgtgcaagatgaaaaaatttctgctttcgg
aacgctgaaaaactttaatttcgatcttccttaaggtaaagaggctgcaa
gatttgggttagcgaggcaaaaattgctaaaaaattggtaaaatcgtaat
cctcaaaaatcgaaggtCCAGCCTCACTGAGTTTATGGACACTTTGGTCA
AATAAAATACTTTAAGGATGATGGTTCAgccaatgaaattgaatttgtga
TTTAGCTCTATTCCAAAGCATCACTGGTCAAAATATTGAAACTACCATGA
GTCggctgatttttttaaaatatgcgCATGCACAGTTAGAGGGGAAGTGC
ACCAGAACGTTCTGGAGTTCCGCTGCAGACTGCCAATCACCAAAAATCGT
GCTCCGGAACACTGGAAGTACTCCGGAATCTTCTGGTGTTCAGCAGCACA
AAAAACAGCACTTTTTGCTCCGGACGTTTCCGGAGCCCCGGAAGGctcct
tgtaaacattccaacaacttccatcgaaatgatctatcacagctcagtca
accatttttagcgcggtccaaggattgagccgagCTAGCAGAGCGcccgc
gcgggtgaaaaacttcaatctgtcaatcattttctcaagcaaagagtacG
CAAAGGgattctagctttacaatagtgccgcggatcatcaatggatagta
ttcaattatcattatccctttattttcattcctagaacttatggaaaaat
ttgaatttgaaagatcttctatgtggcgtttttttgcaaacttcaaactg
atttttgtcccgtctttgcgggactttggcttaattGCTTGCTgtagcat
agggtacaaagtccaaacaagCGTTTCTctccgtaatttttgtatgaaga
gttaggtctatactgactGTGGGATCATTACTTTTTAATATAAAGTTata
tcaacgatgtaaaaataatagataaccaacttgccttgattctcaaaaaa
catccgtgttatggttgtaaaaatattaatgacattttgcatcgtaaaaa
gtgcaattaaataaaagcttgcttcatttgcaaccttctattggacagaa
tcgatcacgtgatgtatatttttccaaaatctgggttagaaaaagtgtat
tttcctataggcagcctcacaaatggaattttttaattagatattattgt
tctataaacattcatctgtttattttgtatcaggcaaccttcatgcactt
ttcattcgtgagatatcgcagtTCAAATCACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaaatttgcagtaaataa
caattcaattttctatcaattcagtggatgtcaaaaagtgtgtcaaaatc
tagctaaaagcataacacgcactgcacacagagctttttaataaagtgct
catttcaataggaaaacaatggttgttctcttgggagaagtgccttctag
aggtagttggttatctattatttttacatcgttggttatattgataattt
ttaaaagatgaaaACTTTTTTGGGATAAATGGGTCACATCTTAGGGCAGG
TTTCATATCTTAGGGCAGGGGGGCCAGGGGTCACAGCTGTCAACTTCACC
ACACcaaaatgggctattccagaaaatttcggTACCCCTGTCGGACGaca
tatatacattttaaaattttttgtagcctttgcaatatttttttcccaGC
GGCGGTCAgaaattccgatgaaaatccaaAATCCATTCTACCATCTACTC
TTTTTAGCTGTTTTAATCCAGACGCGATCAATTGAActtgtcaaaccaat
cgaacaatcgaactaatcgaactccatcaaATTCCATCGAActattaaag
tttgattaaaaaaattaatcgaacctaatcgaacgctcacaatttttgaa
gcaatagcagttcgatttgttcggtcagtaaaacttcgattagttcaatt
atattaaatcctcatatcttccatagcttgcaaaaactttatccTGCCAC
GtgattgccatttcgacagttcctGGACTTGACAGCCTAACGTTTATTGT
ACCTAGATATTTGTCTATcggaataaagtccgtagcccctccGTTGCAAT
TTGGCGCGCTGCCGAGTGGTGGAATCTACGCCCAAACAAACCACCTCTGG
CGTTAAAAGGATACAGGGAAAGTGTGTAATctgttatcggaagtaatttc
ccgatttacatttggtgaaaacttttgccctcagaAATCCCGTAATTGTC
TGCCCCAAGCCTTTCTAATTCAGATTAATCtacgtcagaaaaaaaattct
gggttcaggaaaaattccaagcactttggtCACTGGCCGTTTTTTGactt
agaaattgagttttagCCTTCGGAGTAACCATTTTGGGTGGTTGATGCGC
GCTACAGGCgctaaaaatttttcaaaacacccTCTAGGCAACTTATGAAG
GGTTTATTTTCAAGTATTAAATATTGTATTTGCgaaaataaaagtgattt
tgggTCACTACACAAACCTACAATACAAATTTTTCTGTTGTACCTTGTAA
ACAAACAACAATTGAAAATGTCTTTGACATTTGACAAAAAGTTGTTGTCA
AAACTCAAGTTGTTGTCTCTCAAATATTACTTAAAAAATGCCCAAACTGG
TGTTTTGTGACACTGCTTTAAACTCCTGCTACAGGATactattttaaaat
gaaaatttactaTGCTTTTGTctctcattttttttaaaccttttttattt
gtatcgaaaaaaggaaaacaagaaTTCAAAGGACGAAACAAAAAGAACAC
TCTGGCAGTAAAAGCTCGTGCTCAAGCAAGGAAACAAGAATCTCCAATTA
AGGTATAATAATGTGTATATACAATTTTAAATCTCTCTTAGAAACTTGGT
TTTTAGAAATTAAGTAAGGTTTAGGTAACCAGACATTGCCGGTTATCAAC
ACATGACTTTGAAAACTTTCTAAGTTTAAAGACAAGAAAAGGTTTGATGT
TTGTACATGATGAAATGGTTcctcttttttgaaaacttaaaactGATTCT
TGCTTTTTCCAAAATGTAGTAGGAATAATAAGATAAAACTTGTGTCAAAG
TACGAGTCATTTCAGGGCTTTAATATTAaatgctgtttttttttatttaa
gactGGTCTTTATGCTATATTAGCCCTGGTGATGTTATTAGCAATGGTGT
ATATATTATTTTACTTCGGTCTTGGAAAatgaatttcatttcaatatcAT
TGTACAAGTGAATacatcaaataaattttatagATCTTATTAAATTATTG
TTTATATTTTAATAAACATTAATTATGTTTTCTAAGAATTGTTAGTACAA
AATTAAATGATATTATATTTATATAGATTTTATTATGCTAAATAGTTACA
CAATATTTGtatattttgtgaaatttgatcCCATTTTATGTCAAGTTAAA
GTtggaatttgaaaatgaaaattcctgTTTTAAATGTGCTCGCATTTAAA
AGCAAGGATGGAAAACAAGGGGAAGTGTTTTGAACGGATAGGTAGGATTC
GACGTAATTGCCAAAATTTTCGGACGGGTGGGGATGTGATTTTCGGTGGT
GCAATTTTTCTTGGCAAAGAAATTAACAGAATGACGGAAGCTGCTACGCT
CTTCAAAACCCTcaccataaaaaaatataaggtGTTACTGTTTTGGTAGG
TTAAGGAACTATACTATACGTCTCCTTTCATTTGCTTATGCTTACACAGC
ATATTTGTTGAACAAAAGAAGAACTTCTTTCTCCCAACCAACGCTGCGCA
TATCAGCCATAATAATTCAATAATTCATTATCTTTAATAAGTTGTTATTC
GTATTGTATTTGTATTTTTAGAATGAAGATATTGACGACAACCTTTATAT
ACTGTTTTTAAATTcgtaatatattttattataACTACTTTTAAAATTTG
TATCACTAGTTATTATCCTGGTTAATTCCACAAATACCTATTGAATTAGT
TGTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00011162TCONS_00011162Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:10605..17459 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89	1.84	0.53	0.24	6.11	4.29	12.59	11.92	9.72	7.04	8.42	6.11	4.22	3.83	4.74	5.24	9.59	9.8	3.47	3.71	6.56	6.57	7.2	6.73	5.06	7.16	4.33	2.5	13.73	8.86