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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010783 ID=TCONS_00010783|Name=TCONS_00010783|organism=Clytia hemisphaerica|type=transcript|length=1877bp
CGGCAACCCGATACTTTTACTATGCATCCCATCATTCGCTACCACGCGAT
CATGTGTGCTGGTTAACCTGAAAGACTTATCGTGTCATCCTTTATACGTC
GATGCTGACATGTTCAATGAGAATTACGAAGAAACGAGTGACTTGAATGA
CGAAGTAAAGAATGGTGGAGAGGAGGATGAAAAGATGGAAGAATGAGTGA
AAGAATGGTTGTTGTTAAACAAAGAGTTTCGTAAAGCAATGTCCGAAGCT
TTTTTGCTTGCTCTTTGATTCAAGCGATGCGATTTGATGGGTTCCATTTT
CATGATTATTCGAGTTATAGTTCGTATTGAAATCGTTATGAATCGTTCCA
TGGTCCATTCGACGCTCTCATTTGAGGAAAGTATTGAAAAAATTCATACA
AGTGTCGAACAGGGAAAGCAAAGAGTCTTCAAGAAGACTTAGCTATGAAA
GTATGGTTATGGTGCAGAGAATTTCCGCACAAGTTAATTGCTATCATTAT
ACAATTAGAAGGAAGTTTCATACATTCAGGTCGATTACCGTAAAAATACT
TTATTAGTGTTAAATATATAAGATACCCACACTCCATTCTCCGCATAGAC
AAATTGTACATAGCTTTAGCATATAATATCATTTGCATATTTATATCAAT
TCTATATCGAATAAAGATTAATTCCGCGCGAAAGCGTTTTTAATCTTTGC
GTTTCTCTGATTTTATTTTGCAATATTAGAAAATGGTCTCTggtttttgt
aataattttccATACTTTTAGTATGTATTCAACCAGATTTAACCAACTAT
ATTATATTTTCCCTCTAGAAAaacccaaaataaaaaaagataacttAAAA
AAATAGAGTAAATTTAACTAGAAAAACAAAGACGAATTTAAAAAACGAAA
CAGCAATAAACATGAGTGACGAAAAAACGAAAGAACaaataaatgataaa
aatgtagaagaagaagaaacaaaaaagaaaaaaaagaagaagaagcaaaA
AGTTCAGGTTGGTGATTTTCTAGCATTGGACATCCCCTTCATTTTTCTAG
CAGTTTGGGTTTTGAACCTCCATATAATTCCAATGTCTTCTGAACACTGC
AAACCCTCATAAGTTGTCTCCAAATTATGTTTCCTTTGCGTTATTGAGCT
ATGAagaatatttcatgaaaattatTCCTACTTAAATTACTCTCAAGCGT
TTAATAAACGGAGGGGGGGCtggaaattttgataaattgggggacctaat
taccgaTGGTTCCAATCCCCTTTATTCATTCGCCAAAAACTGGAAACTGT
CTTGTTATTATTTGCTTAGGACGAAGAAATAGAAGTGGCAGACAAATcaa
ccaaaaaagaaaagaaacataaaaataaGacATCTCGGGAGGATGAGGAC
CAAGATGCTGAAGAAGCAATAGACGAACCAAcaaataagaaaaagaagaa
gaaaaaatcgaaagcagaaaatgaaaatgaagatgaagaacccgatgaaa
aagaagaacctgttgaaaaaAAAGAATCAACGAAgcccaaaaaaaagaag
aagaaaaataagctAGTAGATGATGAAGAAACGAAAGAAGTTGATGAAAA
GGACGAAAgttcaagcaagaaaaagaaaaagaaaagaaaaaatgaagatg
ctGATGACCAGAATACGGATGACGAAGACGCAATCAacgaaaaaccatca
aaaaagaagaagaaaaaacataaacaagaGGAAGATGAATGCACGAATAG
TGGTGAAGATTCTCCACCAAAGAATGTCAAGGATGTGGTAAATGATGACG
ATGACggtaaaaagaagaagaagaaaaagaaaatggaacGAAGGAAAATG
AGTGATTCTGAAGAAGAAGAACCTAAA Run BLAST on NCBI transcript from alignment at sc0000117:117943..121842+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010783 ID=TCONS_00010783|Name=TCONS_00010783|organism=Clytia hemisphaerica|type=transcript|length=3900bp|location=Sequence derived from alignment at sc0000117:117943..121842+ (Clytia hemisphaerica)
CGGCAACCCGATACTTTTACTATGCATCCCATCATTCGCTACCACGCGAT
CATGTGTGCTGGTTAACCTGAAAGACTTATCGTGTCATCCTTTATACGTC
GATGCTGACATGTTCAATGAGAATTACGAAGAAACGAGTGACTTGAATGA
CGAAGTAAAGAATGGTGGAGAGGAGGATGAAAAGATGGAAGAATGAGTGA
AAGAATGGTTGTTGTTAAACAAAGAGTTTCGTAAAGCAATGTCCGAAGCT
TTTTTGCTTGCTCTTTGATTCAAGCGATGCGATTTGATGGGTTCCATTTT
CATGATTATTCGAGTTATAGTTCGTATTGAAATCGTTATGAATCGTTCCA
TGGTCCATTCGACGCTCTCATTTGAGGAAAGTATTGAAAAAATTCATACA
AGTGTCGAACAGGGAAAGCAAAGAGTCTTCAAGAAGACTTAGCTATGAAA
GTATGGTTATGGTGCAGAGAATTTCCGCACAAGTTAATTGCTATCATTAT
ACAATTAGAAGGAAGTTTCATACATTCAGGTCGATTACCGTAAAAATACT
TTATTAGTGTTAAATATATAAGATACCCACACTCCATTCTCCGCATAGAC
AAATTGTACATAGCTTTAGCATATAATATCATTTGCATATTTATATCAAT
TCTATATCGAATAAAGATTAATTCCGCGCGAAAGCGTTTTTAATCTTTGC
GTTTCTCTGATTTTATTTTGCAATATTAGAAAATGGTCTCTggtttttgt
aataattttccATACTTTTAGTATGTATTCAACCAGATTTAACCAACTAT
ATTATATTTTCCCTCTAGAAAaacccaaaataaaaaaagataacttAAAA
AAATAGAGTAAATTTAACTAGAAAAACAAAGACGAATTTAAAAAACGAAA
CAGCAATAAACATGAGTGACGAAAAAACGAAAGAACaaataaatgataaa
aatgtagaagaagaagaaacaaaaaagaaaaaaaagaagaagaagcaaaA
AGTTCAGGTTGGTGATTTTCTAGCATTGGACATCCCCTTCATTTTTCTAG
CAGTTTGGGTTTTGAACCTCCATATAATTCCAATGTCTTCTGAACACTGC
AAACCCTCATAAGTTGTCTCCAAATTATGTTTCCTTTGCGTTATTGAGCT
ATGAagaatatttcatgaaaattatTCCTACTTAAATTACTCTCAAGCGT
TTAATAAACGGAGGGGGGGCtggaaattttgataaattgggggacctaat
taccgaTGGTTCCAATCCCCTTTATTCATTCGCCAAAAACTGGAAACTGT
CTTGTTATTATTTGCTTAGGACGAAGAAATAGAAGTGGCAGACAAATcaa
ccaaaaaagaaaagaaacataaaaataaGGTATCTTCTTTTACAGCTTTA
CCTATCTAAGACATATGGCGTTCTAAGTGTGAAGGCCATGCTAAGACACC
ATCCAAACGTGCAAACACTTCAATGAGGAAGGGCATAATTTTACAATCAT
CGAAAATCTAAGAAACATTAAAGGAAATAAAAGCCAGCTAAAGAACACCA
TTCTTACACAAGAGAACTTTTTGATCAACAAACTCCAAACCTTAAAACCC
AAGTGTTTAAACCAAGAACTAAACTGAAAGCGCCTTAAGTCTGTGTTTAC
ACGTCCATTTTTACCTGAGAATTTGTTGACTAATTAATTCAGGTGGGGGT
GCCCTCAAAAAACTATTTGTCCaatatgtggcccccaaaacgtcgatcaa
atttaaaatctttctcAAACCTAGAGGAAAAgacattttacaaaaatttt
tgctgcatgaaaaagtttaacatcTCAActttatttcccggaaattattt
ttcaaaattttcaattttaacaatatttttcaatcgcttaaagataggta
gcttttttctaatggcccccaaaacggaggtttgcaattttagcgatttc
tcgagatatctttaagatatgaatacaaaattttgaccatagttttgaaa
tgtgatttagagggttttgggaataaatttgtttgataaaatttttacag
tataccccctggttgtcaaaacgcaggtttggggtccccaaaacgtaggt
gtgGTTAAATTATTaggcccagtggtaatagggggagtaactatgaacat
atttgtgttttcccttaaatttacgacccgatggatgtaaaatttatgat
ttttataaaatatttcaaaaatcgtctaattctgataaatatacaggtca
gaatcttcattttaatgacgacctacgttttgggggccgtctccgttttg
ggggccgtttccgtcaacaatattttttgaaaactccaCGCAGTCTCTTA
AAAATAGGGAAGGTGTATAAAAGATGCCCGAAATCCAGGATCTCGAAAAT
CTCGGCTATAATCAAGGGAGGGTTTGGCATTCTGACAGTGCCCTGTTCAA
TGCTGCTTTATGAATTGATGAAACAATTACAATTGACCcaatacaaaaat
aattaaactatggaaattttcttcaattttttttgaaaaattgcaaaaat
tctgATAAATATTTCCCGGAATAGCTCATTACACGCTGAGATAAATGTGA
CAcgactgattttttttattcagacATCTCGGGAGGATGAGGACCAAGAT
GCTGAAGAAGCAATAGACGAACCAAcaaataagaaaaagaagaagaaaaa
atcgaaagcagaaaatgaaaatgaagatgaagaacccgatgaaaaagaag
aacctgttgaaaaagtaatgaataaTGATTTTAGGATCTGAATTAACGCT
TGTTTCAGCCTTAAAGTATCACGTGATCACTGCCATACACTCTTTTCTAT
AAGAACCAATAAATATCTTATGTGGCtcggttgttcttattttttttggc
attttcagcctaaaattgTCCTTACCCTGTTCTTCTTTCCAGAACAAAGC
TGAGAAAAACAATTCAGCAATCCCCGGCGCTgtcttttaattgtttttat
tttttggcatttttgagcctcgttgtttttatgaaatatggttttgataa
aaaagagtAAAGTTATAACGGGCATTTACGCTAACTAGGATTGTCTGAGC
ATATGAACCATATGAGGGTATGACCATAtgaataaagaaagaaatatcCA
ATAAATTGATGGTTCTCTTCAATCTTTTTCTACAGAAAGAATCAACGAAg
cccaaaaaaaagaagaagaaaaataagctAGTAGATGATGAAGAAACGAA
AGAAGTTGATGAAAAGGACGAAAgttcaagcaagaaaaagaaaaagaaaa
gaaaaaatgaagatgctGATGACCAGAGTAAGTGAAGAAAAACTGCAGGG
AATTTAAATTCGAAAACAAGTAAACTCTCATTATAAAATCAAATgccctt
ttttgtctttttcagcGCTCACAAAATCTCGAAAGCGAAACTATGCGATC
TTGCTTAGCGACATCTTGCGACTGTGTATGTAGGCCATTTCATGGTCGAA
ATAATGATTGCTTACGCTCACATAACGGCTTTCCGTTCTAGACTTAACCC
AGCACCACCTCGAAATTGTAGGCCAATTTAAACTCGTGATCAGAGTGCGT
AGGTACTGATTACCCACGATTCATTTCACTAAGGCTCATTTCACTAAGAC
TCATGCTGATAAGGAAGTTATTTTTATGATTCCAGATACGGATGACGAAG
ACGCAATCAacgaaaaaccatcaaaaaagaagaagaaaaaacataaacaa
gaGGAAGATGAATGCACGAATAGTGGTGAAGATTCTCCACCAAAGAATGT
CAAGGATGTGGTAAATGATGACGATGACggtaaaaagaagaagaagaaaa
agaaaatggaacGAAGGAAAATGAGTGATTCTGAAGAAGAAGAACCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010783-exon-sc0000117-1491911889:117943..119321 | TCONS_00010783-exon-sc0000117-1491911889:117943..119321 | Clytia hemisphaerica | exon |
| TCONS_00010783-exon-sc0000117-1510915933:117943..119321 | TCONS_00010783-exon-sc0000117-1510915933:117943..119321 | Clytia hemisphaerica | exon |
| TCONS_00010783-exon-sc0000117-1575043694:117943..119321 | TCONS_00010783-exon-sc0000117-1575043694:117943..119321 | Clytia hemisphaerica | exon |
| TCONS_00010783-exon-sc0000117-1491911889:120566..120706 | TCONS_00010783-exon-sc0000117-1491911889:120566..120706 | Clytia hemisphaerica | exon |
| TCONS_00010783-exon-sc0000117-1510915933:120566..120706 | TCONS_00010783-exon-sc0000117-1510915933:120566..120706 | Clytia hemisphaerica | exon |
| TCONS_00010783-exon-sc0000117-1575043694:120566..120706 | TCONS_00010783-exon-sc0000117-1575043694:120566..120706 | Clytia hemisphaerica | exon |
| TCONS_00010783-exon-sc0000117-1491911889:121128..121269 | TCONS_00010783-exon-sc0000117-1491911889:121128..121269 | Clytia hemisphaerica | exon |
| TCONS_00010783-exon-sc0000117-1510915933:121128..121269 | TCONS_00010783-exon-sc0000117-1510915933:121128..121269 | Clytia hemisphaerica | exon |
| TCONS_00010783-exon-sc0000117-1575043694:121128..121269 | TCONS_00010783-exon-sc0000117-1575043694:121128..121269 | Clytia hemisphaerica | exon |
| TCONS_00010783-exon-sc0000117-1491911889:121628..121842 | TCONS_00010783-exon-sc0000117-1491911889:121628..121842 | Clytia hemisphaerica | exon |
| TCONS_00010783-exon-sc0000117-1510915933:121628..121842 | TCONS_00010783-exon-sc0000117-1510915933:121628..121842 | Clytia hemisphaerica | exon |
| TCONS_00010783-exon-sc0000117-1575043694:121628..121842 | TCONS_00010783-exon-sc0000117-1575043694:121628..121842 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:117943..121842 + |
Blast
The following BLAST results are available for this feature:
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