TCONS_00010409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010409
Unique NameTCONS_00010409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3162

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010409 ID=TCONS_00010409|Name=TCONS_00010409|organism=Clytia hemisphaerica|type=transcript|length=3162bp
CCTTTTTTTTGATCCGTGCTGAGACTGATAATTGAGCTCCCGTGTAGTAG
TGATTCAACCATAGATTGGACTTGAAATTCGCCACTGGTAACCAAGCCAG
AAATGAAAGCGCTCAAGAATTGTATGCCAGGTTCAATTTGCACATGAAAG
AGATGAGAGATACAAAAACACTTTAGCAATAAGAAGTTTTTTCAGGCTGG
GTGATATCATATCCCCCAAAATGAATACTTTTTCTTTCTGGAAAACAAGT
AGGCCTTACTCCCTATGGTAAGGTTTTAAAAGATAAAAGTTCCTATAGTA
TAGTAAAAGTTCCTATATTTTGTAGCTGTAAGACTATTTTCAAGTCTGCA
AAGTTCTATATTACTACTTATAATGGATTTCGACCATGGTGTCCTCCAGg
ttttcagcccccccccccccccccccatctgGGGCCTAAAATCCCCATTT
GGTCCCCCCCCCCattggaagaatatttttgttaccaACCGATTCGCTAT
ATTTTGCATAACAActtaacaaaaataacaatttcctGCAATGAAAACTC
AAATGCTGTAAATATACACATTTAATCATATATTTGAAACACATTTAATC
ATATATTTGAAACATTATACCTAATTTTTGCACTTTCTAAAACCAGACTC
CTTTATAACCCTGTATAACTAACATTTTAAACagccaaaataaataaacc
GAATGATGAATGGTGCAGCTCTGTCACAACAGTGCAAATATTCAATCAGA
TCGACGCTAAGTTTCGAGAAGAGAAGGACAGAAGGACagtaaattatctt
tttattgattCCTTCATATTTTTAAGTTTAGTTTAGTAGTGAGAAAAATA
ACTACCCAACATAGCCTTTGAATAAAGTAATCGTTCAAAAAAGTACACTT
TGCAATAAAGAACACAACCCACGGTTAAGTTTAATGGTTATTTGGCTGAA
AGTACAGCTACTTAAGGAAGTTACCGTCCCCATTAGAACCATGGGCCGGG
TATTTAGTGGTAAACAAGTAGTGAGAAAGAAGAGATCATGGAAAGAAATC
ATCTACAAAAACCATGCATACACAGAACAGGTTGAACCGAGCACTAATCG
AGGTTATAGGTAATCAGGCCAACATCCCAGGAAATGAAAAGTGTTCTCAC
TTCTCAAATGAAACTACTAGCTTACACCTAATACGATCGATCAAACTATG
CAGAtaagttttcacaaaaaaaactgTCAACCATTACCTAGTTTGAGATC
GTTCAGCATaagtttttggtcatttgcctTGCAAAAGCTGGGTTGAATGG
ATTATCCTATGCTCAAGAAAGCTCAAAGCAGAACATCCCGGCTATCGTAC
ATCAAAGATAGcacatgatttaaaaaattccaGTCCGTATAGATCAAATC
TTTTTTCCCTATGCTTGTTTACCTTGATATTTTACCAAACACCCTGTGCG
TTCAGGAATAAAGCAAAGCATGCCAAAGAGTACGCAGAAATTGATGAGAA
GTCATTTTGAATATGAGAATTTTCTGTATGGCCAGATAATACCGTGGGTT
AACGTCCCATatacaaaAGCTGCAGATCGAAAGTGAATTTGATAACGAAA
GATACATCAGCCATCTTAAGAAGAGTGGTGTCGAAAAAGGAATTCAGCAG
ACCCAAAGTTAAGACTGTACAGAAAACACTAAACAACCATCAACAGTCTC
TTTCCGCAGAGTATGAAAAAATTGATGAGAAGTCATTTTGTATATGAGAA
TTTTCTGTATGGCCAGATAATACCGTGGGTTAACGTCCCATATACAAAAT
TAATCTCAACAAGATCCCCATACAGCTGCAGATCGAAAGTGAATTTGATA
ACGAAAGATACATCAGCCATCTTAAGAAGAGTGGTGTCGAGAAGGAATTC
AGTTCAAACCCAGCTGCAGATTGAAATCGAATTTGGTAAAAAAGATTTTC
GCAAATATTTGATAGAAGAGCAGAATCATAGAAACTTAAAACACTTGAGT
CACAGTTATGAGTTTTTTAAGGAAGCATCAAAGCattaaacaaaatttaa
taaatttaaTAATGTAAAAATAGTTGCTGAATTTGCAATTAAAATGCAga
aaaaatttaacatttaattTTAAAAGCGAAATACATAGAACCAGCACTAA
AATCTGAAGTATTGCAGTGAAAATTATACGAAAGTAGTCATACTTAAGGA
GCCAGTTATGTAGGGGTAGCAGGGAATAGCAgtgttttaaaagaaataaa
aatgattaaaaaaatgattataaaaatgttaaaaaacgaAAACTAGAATT
GATATATGGATATTTCCAAATATTTCCTAAACATTGGGCTGATTCACTTT
CTCTCAATTTTCAATCACCTAGGATCACACCACCTTGTGCTCTTACCGTA
TTATTTCGAGTAGACGCCCCTGGAATTTATTAAATCTTTtggattttaga
aaaaaggcGCTTATTCAAGGGGGGGgtatttaaaaagatttttttggccT
TATTTTACATTGAAGTTTATACTTAAAGTTTTTCTAGAATTTATGACATA
ACTTACAACCGTTTACCATAATCATGCCATTTATCCAAATTGATGTTAAT
CTTTCTTTCTATCTTGGCTAATCACAATTTGTTTGACATAGATTTGAATT
TGATCCGCGTATCTTCCTGCTATTATGGTCTAAAacgtaaaagaaaaaaa
tttctgagctaaatttcaaataaattatTTGCTATAATGAAAGATCCAAT
GAAGTCAGTATAAATCACCCTTTTAACCAGCTGaagaatttagatttttg
aatttttgtatcCATACTACTATATGCACATGAATTCGGTTCCTGCAACA
AATCTGTTGAGAGAAAAGTTGTCAGTGCTACATAAGAATGCTAAGTGGGT
TTAAAAACAATAACCCTTGATCCCACACAACCAATAATGTGCTTTTCAAC
AATGCAAGAATCACACTCAGCAAAGCTATCTGATAGGGTAGTCTCCGTTT
AGCAGGTCATTTGAATCTGCTATTAAAATTCTTTTCTGTCACCTTTAAGT
TGAATATCAGAGTAAGTATTGTAACATGACAAATCTACTTTGATCACAAA
CCATTTTTATCCTGCATGAATCGAAGTTGACAAACATTTCCAAGCAGTCC
GCAAAAAGAAAT
Run BLAST on NCBI

transcript from alignment at sc0000106:413289..416735+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010409 ID=TCONS_00010409|Name=TCONS_00010409|organism=Clytia hemisphaerica|type=transcript|length=3447bp|location=Sequence derived from alignment at sc0000106:413289..416735+ (Clytia hemisphaerica)
CCTTTTTTTTGATCCGTGCTGAGACTGATAATTGAGCTCCCGTGTAGTAG
TGATTCAACCATAGATTGGACTTGAAATTCGCCACTGGTAACCAAGCCAG
AAATGAAAGCGCTCAAGAATTGTATGCCAGGTTCAATTTGCACATGAAAG
AGATGAGAGATACAAAAACACTTTAGCAATAAGAAGTTTTTTCAGGCTGG
GTGATATCATATCCCCCAAAATGAATACTTTTTCTTTCTGGAAAACAAGT
AGGCCTTACTCCCTATGGTAAGGTTTTAAAAGATAAAAGTTCCTATAGTA
TAGTAAAAGTTCCTATATTTTGTAGCTGTAAGACTATTTTCAAGTCTGCA
AAGTTCTATATTACTACTTATAATGGATTTCGACCATGGTGTCCTCCAGg
ttttcagcccccccccccccccccccatctgGGGCCTAAAATCCCCATTT
GGTCCCCCCCCCCattggaagaatatttttgttaccaACCGATTCGCTAT
ATTTTGCATAACAActtaacaaaaataacaatttcctGCAATGAAAACTC
AAATGCTGTAAATATACACATTTAATCATATATTTGAAACACATTTAATC
ATATATTTGAAACATTATACCTAATTTTTGCACTTTCTAAAACCAGACTC
CTTTATAACCCTGTATAACTAACATTTTAAACagccaaaataaataaacc
GAATGATGAATGGTGCAGCTCTGTCACAACAGTGCAAATATTCAATCAGA
TCGACGCTAAGTTTCGAGAAGAGAAGGACAGAAGGACagtaaattatctt
tttattgattCCTTCATATTTTTAAGTTTAGTTTAGTAGTGAGAAAAATA
ACTACCCAACATAGCCTTTGAATAAAGTAATCGTTCAAAAAAGTACACTT
TGCAATAAAGAACACAACCCACGGTTAAGTTTAATGGTTATTTGGCTGAA
AGTACAGCTACTTAAGGAAGTTACCGTCCCCATTAGAACCATGGGCCGGG
TATTTAGTGGTAAACAAGTAGTGAGAAAGAAGAGATCATGGAAAGAAATC
ATCTACAAAAACCATGCATACACAGAACAGGTTGAACCGAGCACTAATCG
AGGTTATAGGTAATCAGGCCAACATCCCAGGAAATGAAAAGTGTTCTCAC
TTCTCAAATGAAACTACTAGCTTACACCTAATACGATCGATCAAACTATG
CAGAtaagttttcacaaaaaaaactgTCAACCATTACCTAGTTTGAGATC
GTTCAGCATaagtttttggtcatttgcctTGCAAAAGCTGGGTTGAATGG
ATTATCCTATGCTCAAGAAAGCTCAAAGCAGAACATCCCGGCTATCGTAC
ATCAAAGATAGcacatgatttaaaaaattccaGTCCGTATAGATCAAATC
TTTTTTCCCTATGCTTGTTTACCTTGATATTTTACCAAACACCCTGTGCG
TTCAGGAATAAAGCAAAGCATGCCAAAGAGTACGCAGAAATTGATGAGAA
GTCATTTTGAATATGAGAATTTTCTGTATGGCCAGATAATACCGTGGGTT
AACGTCCCATatacaaaatttttctccaCAAGATCCCTATACAGCTGCAG
ATAGAAAGTGAATTTGATAAAGAACGAAAGATACATCAGCCATCTTAAGA
AGAGTGGTGTCGAAAAAGGAATTCAGCAGACCCAAAGTTAAGACTGTACA
GAAAACACTAAACAACCATCAACAGTCTCTTTCCACAGAgtatgaaaaaa
atgatgagaagTCATTTTGTATATGAGAATTTTCTGTATGGCCAGATAAT
ACCGTGGGTTAACGTCCCATATACAAAATTAATCTCAACAAGATCCCCAT
ACAGCTGCAGATCGAAAGTGAATTTGATAACGAAAGATACATCAGCCATC
TTAAGAAGAGTGGTGTCGAAAAAGGAATTCAGCAGACCCAAAGTTAAGAC
TGTACAGAAAACACTAAACAACCATCAACAGTCTCTTTCCGCAGAGTATG
AAAAAATTGATGAGAAGTCATTTTGTATATGAGAATTTTCTGTATGGCCA
GATAATACCGTGGGTTAACGTCCCATATACAAAATTAATCTCAACAAGAT
CCCCATACAGCTGCAGATCGAAAGTGAATTTGATAACGAAAGATACATCA
GCCATCTTAAGAAGAGTGGTGTCGAGAAGGAATTCAGTTCAAACCCAGCT
GCAGATTGAAATCGAATTTGGTAAAAAAGATTTTCGCAAATATTTGATAG
AAGAGCAGAATCATAGAAACTTAAAACACTTGAGTCACAGTTATGAGTTT
TTTAAGGAAGCATCAAAGCattaaacaaaatttaataaatttaaTAATGT
AAAAATAGTTGCTGAATTTGCAATTAAAATGCAgaaaaaatttaacattt
aattTTAAAAGCGAAATACATAGAACCAGCACTAAAATCTGAAGTATTGC
AGTGAAAATTATACGAAAGTAGTCATACTTAAGGAGCCAGTTATGTAGGG
GTAGCAGGGAATAGCAgtgttttaaaagaaataaaaatgattaaaaaaat
gattataaaaatgttaaaaaacgaAAACTAGAATTGATATATGGATATTT
CCAAATATTTCCTAAACATTGGGCTGATTCACTTTCTCTCAATTTTCAAT
CACCTAGGATCACACCACCTTGTGCTCTTACCGTATTATTTCGAGTAGAC
GCCCCTGGAATTTATTAAATCTTTtggattttagaaaaaaggcGCTTATT
CAAGGGGGGGgtatttaaaaagatttttttggccTTATTTTACATTGAAG
TTTATACTTAAAGTTTTTCTAGAATTTATGACATAACTTACAACCGTTTA
CCATAATCATGCCATTTATCCAAATTGATGTTAATCTTTCTTTCTATCTT
GGCTAATCACAATTTGTTTGACATAGATTTGAATTTGATCCGCGTATCTT
CCTGCTATTATGGTCTAAAacgtaaaagaaaaaaatttctgagctaaatt
tcaaataaattatTTGCTATAATGAAAGATCCAATGAAGTCAGTATAAAT
CACCCTTTTAACCAGCTGaagaatttagatttttgaatttttgtatcCAT
ACTACTATATGCACATGAATTCGGTTCCTGCAACAAATCTGTTGAGAGAA
AAGTTGTCAGTGCTACATAAGAATGCTAAGTGGGTTTAAAAACAATAACC
CTTGATCCCACACAACCAATAATGTGCTTTTCAACAATGCAAGAATCACA
CTCAGCAAAGCTATCTGATAGGGTAGTCTCCGTTTAGCAGGTCATTTGAA
TCTGCTATTAAAATTCTTTTCTGTCACCTTTAAGTTGAATATCAGAGTAA
GTATTGTAACATGACAAATCTACTTTGATCACAAACCATTTTTATCCTGC
ATGAATCGAAGTTGACAAACATTTCCAAGCAGTCCGCAAAAAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005850XLOC_005850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010409-exon-sc0000106-1491911889:413289..414855TCONS_00010409-exon-sc0000106-1491911889:413289..414855Clytia hemisphaericaexon
TCONS_00010409-exon-sc0000106-1510915933:413289..414855TCONS_00010409-exon-sc0000106-1510915933:413289..414855Clytia hemisphaericaexon
TCONS_00010409-exon-sc0000106-1575043694:413289..414855TCONS_00010409-exon-sc0000106-1575043694:413289..414855Clytia hemisphaericaexon
TCONS_00010409-exon-sc0000106-1491911889:415141..416735TCONS_00010409-exon-sc0000106-1491911889:415141..416735Clytia hemisphaericaexon
TCONS_00010409-exon-sc0000106-1510915933:415141..416735TCONS_00010409-exon-sc0000106-1510915933:415141..416735Clytia hemisphaericaexon
TCONS_00010409-exon-sc0000106-1575043694:415141..416735TCONS_00010409-exon-sc0000106-1575043694:415141..416735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:413289..416735 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0726036	0.150797	0	0	0	0	0.054816	0	0	0	0	0	0.0298293	0	0.0341709	0	0	0	0	0	0	0	0	0.352303	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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