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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010406 ID=TCONS_00010406|Name=TCONS_00010406|organism=Clytia hemisphaerica|type=transcript|length=2108bp
ttttcaggtaGATAGATTAAAGAATTAAAGAGAAATGTCACTGAGCAAAA
ACTTAACAGTGGAACCTAGGGAAGATGAACCAAGTCATTCAGACAACATG
ACATCCATATCACATTCTTTGGAGAACGCTGAACCTGTCCAAACCAATGC
ACAGATATTACTGACGCAAGACGGAATCGTTTGGGCACCAGGTGAAACGT
TGATGCTGACACAGGATGAGATACAAAGCTTACACGAGTCTGGTGTCGCC
CACATAAGACAAAATGAAAGTGGCACTGAATATGGGTTGAAAGTTAATGC
AGATCGCTCTTTGAATTCTGACGACGAACAAAGGATTCCCTGTTCTGTAG
AATCATGTGTTGTGGCAGATACTTTCACTATTGAGCCGCCGGTCATTGAA
AGTCGTCAAGAAATCAATTATGCTAACAATTTGACACAATTCCAAGTACA
AATGTCAATAGGTGACATGAACCATTTGCAAAAGATCACCAACGAAAATG
TTTTGATGAGTCAAGCAGTCATACATGACGATAGCATGAGAAAACAAGAG
TTTCTCTCGCCAAATACTTCCATGCAAAGAGCTAAAAATGATATAGTGGG
CGAATCGAAACAGTTTCTATCTAATGATTCGTCAAATATAATTTCGGAGG
ATAGAAATGATCTGTTTATCAAAAACGAATTAAGAGAAAGCAAACAACAT
ATTGATAAATCAAAAGGGAATGTGAAATCCGAATGTTCTTCATCACGTGT
TGCCAAAAAAGAAGTGACAGTTGATGGGACGAGTGATGCAATGACTTCCA
TCGTATACATGCATCTAGCGGATGATGATTCAGAAGAAATGGTTACGCAA
CAAACAGACCATGCAATCGATATGCAAAAGTGCAATCAAAAGGAAGAATT
TCTGAATGATGCTTCAATTAAAATCGTACGATTTCTTACTGTCGTTCTGA
AAAAAACCATCGCGAGCCAAAGGCCAACGTTTGCGGGGACTGTGAGCAAC
TTGGCTTGAGTACCGTCGTTTGTCGGCGTAAACGTAACCATACGGCACCG
AACGCTCAACCTTTGAATATCGTGATCAACACCGCGTTACAAATTCCTGA
TAACGTCAAGCAATTGTGTATGCGAAATTATTTGCCATCCTGCTTTGCAG
AATTGCACAGCATAGTGATCCATCATGCGGACATAACCTTTGTTGCACCC
AGAAGGAAATCTTGTCCAGCTGATGAAGAGCAGTCGACAACTGATAAAGT
CGCCAATATGCGCAAACCAACTGATTACGCGCGTGGTTATCTTTACCCAT
ACACACCAGAAAGGTGGAAACAATGGCTGAAAGACTTTTCAACAGAAACG
GGCACAAATTACCGTATTCGAACCGGAAAACGCGTCAATAAAAAGATGGA
TCATCACGGACTGGCTAACCACAACGGTAATATCATTTCATACAGTACCA
TAGAAACCCAACTCTATAATTGTGCTTTGGGTGGTCGTCCTAGAAAGCGA
AAACATGTAGAGTCGATACCAAAGCGTAAAGAGAGAGAATCCAAATTGAT
TGGATGTTCTGCAGTGATTCATACGAGATTGCTGGAAACGAAAGACGGCT
GGAAAAGTCTGGAGGTTACTGTTCCAAAACTTTCAGCACATCTACCATTT
CACGACCCAAAAGAATCGGTAGAGGATGAGAGCATTGTACAAACTATTGA
TCATTTTAACCCACCATTGAACTCGCCATCAAATGAAAACCTCACTACGA
CCGAGTTCTTTGATATTGATGTTCAAACTTCAAAAATGACTACTGTCAAC
GAAAAAGAGACTTTAATGAATGAAACACGTAAAAACATAAAACAGTTATT
GCTGACTTCTGCAAGCCTCATTGATTCCATTGACAATCCCAATGTGCTGG
AAGATATTCAAGTCCAATCACAAGACTTCttcgaaaacattttcaaagaa
gCAAAATCAGcgaagaaaatgaaaaggagTAGAAATTCGAACAGTAAAGT
CTCCATCTCTAACGAAAGTGATATtgattaaattattttattaaaattat
attaaagGGAATTCTTGTAAAGCTCGTGAAACAAGTTAATAATCTCACTG
ATAATTTA Run BLAST on NCBI transcript from alignment at sc0000106:179888..184845+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010406 ID=TCONS_00010406|Name=TCONS_00010406|organism=Clytia hemisphaerica|type=transcript|length=4958bp|location=Sequence derived from alignment at sc0000106:179888..184845+ (Clytia hemisphaerica)
ttttcaggtaGATAGATTAAAGAATTAAAGAGAAATGTCACTGAGCAAAA
ACTTAACAGTGGAACCTAGGGAAGATGAACCAAGTCATTCAGACAACATG
ACATCCATATCACATTCTTTGGAGAACGCTGAACCTGTCCAAACCAATGC
ACAGATATTACTGACGCAAGACGGAATCGTTTGGGCACCAGGTAAAATCT
GCAGTAAGatcttttttagtcaaagcttTTGCAGTTGAGGCACGCAATCA
ATTTTTCACCACCACCGTCCTTTTTGCTGAAATCAGTCCTAGGATACGGT
ATCCAGGGATTCGAAAATGCTATTGACTTAAGATTTTAATAAGTGTTAGG
TATTGGAAATGCAAGCTTATAGCCAAAATTCCATCAAAATTAGACCAGGG
AAGTGCTGAAAGTGATCATTTTAGGACCGGTCTGGAAAGTACCAAACACG
CTCGGAAACAAATTTCTCCATTAactttctcttttatttgacaaaatAGC
CTTCATAATTGTTCTGAAagaaatttcaatcaaatctaACGAGGTTATCG
GTTAATATTTGATTTTACCCAAATTTACTTTTTGGTTCCGGATATTTGTC
CATCTAGACCAGGCCTAAAACTCATcaaataacaacaaaataagaacGTT
GATGATGCTCGCGAGAGTATTcttaagtgtttttttttcgttttaacaAG
CAAAGGTGTTTTTAAGAGTAAGTCCACTATATTTCCCCCAAACGATAAGG
CATAAGAGGGTTTTCTTCCTGAAACTATAGAGATAATAAAAGTTAGATGG
AGtaacaacttttctgtaatagcGAGAGAAGTtataaaactctttagaaa
tttctttcaaatcggcctcctttgattaccaatccttgatagcaaaaatc
agtcaagatatagattataagaactaaagtaaagttattctgtccaacga
aacctcgtatttttaggtaaaatgcgaatttttttcgagtaataatttct
ttatagttttgaaagaagtttttattttatcgggaaactttcgagaggta
aacttttgcgaattctttgttgtttgtggaaggttctttgctataaatat
ctttagatctaaaatagcagctgcctcaaaattttgatagaatatagttg
aaagattggtattaaagtctgtccagatataattggcagtggaaacaaaa
aggcctgtaacttttgatagtcaaatttaattatggaaattttttttgat
tgttttagagaatcaaaagcgctatatttgaatgtatttttggttgaaaa
attcgcaatttttagtggttaaatttgcgattgcaaaaattgagcgtttt
ttctacttatgctataacgttcatttttacatcagtggtagttcaacctt
agcttaagaagtttcttaaatttcaaggcaaacagaaaagcccttcggaa
gatatgggacccgaaataccccttggtagcacttttctgtgaaatatcaa
atctccaacttattacttaaAACGGGGGTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATTACttaaaacgggggtagtgatatgatt
gataaaacagtttttcgatcataacacattttacgatctttttaatgacc
tcatagccaaactgtgtttggtattttgggaattagcaaagttctttaat
ggcttaaaaataacaaaggcaatataagttcatgcttatcttttcaataa
aagcaattatactgtgatttcacttcgtttcgaaataatccaTGATACCA
ATAGTATCAATgaaccaacacttaacattttccaacttttaattgcactg
ttcaaaaaacaTGATAACatataacccccgtttttagtaataagttggag
atttgatatttcacagaaaagtgctaccaaggggtatttcgggtcccata
tcttccgaaggacttttctgtttcccttgaaatttaagaaacttcttaac
ctaaggttgaactaccactgatgtaaaaatgaacgttatagcataagtag
aaaaaaagctcaatttttgcaatcgcaaatttaaccactaaaaatcgcga
atttttcaagcaaaaatacatttaaatataacgcttttgattctctaaaa
caagcaaaaaaaatttccataattatatttgactatcaaaagttacaggc
attcttgtttccactgccaattatatctggacagactttagtaaatATGt
agaaattgaccaaatttgccgaggattccctgagcagcgaacatttcaaa
ttcgatattctgtgcttattcttgcaaggttttcttatgttttataaaca
aaactgtcatcacaagatgaacaaattaaaaatgtagcgtgcttttattc
aaattctcttcAACTCAAGTATTATCTCATGGGAAAGCAAAGTTCATGGC
TTTTTNtatgttttataaacaaaactgtcatcacaagatgaacaaattaa
aaatgtagcgtgcttttattcaaattctcttcAACTCAAGTATTATCTCA
TGGGAAAGCAAAGTTCatggctttttcccaaagcaacaaagcaacagttt
gctatcaacgatacaatacaatagaatagtaggagtggtatctccatcta
tatttttattatctcCATGCTGAAACCAATTAGGGAAGAAATTATGCTGA
AATACTATTCACCAAGTCGTTGTCTTTTTCATTTCCAGGTGAAACGTTGA
TGCTGACACAGGATGAGATACAAAGCTTACACGAGTCTGGTGTCGCCCAC
ATAAGACAAAATGAAAGTGGCACTGAATATGGGTTGAAAGTTAATGCAGA
TCGCTCTTTGAATTCTGACGACGAACAAAGGATTCCCTGTTCTGTAGAAT
CATGTGTTGTGGCAGATACTTTCACTATTGAGCCGCCGGTCATTGAAAGT
CGTCAAGAAATCAATTATGCTAACAATTTGACACAATTCCAAGTACAAAT
GTCAATAGGTGACATGAACCATTTGCAAAAGATCACCAACGAAAATGTTT
TGATGAGTCAAGCAGTCATACATGACGATAGCATGAGAAAACAAGAGTTT
CTCTCGCCAAATACTTCCATGCAAAGAGCTAAAAATGATATAGTGGGCGA
ATCGAAACAGTTTCTATCTAATGATTCGTCAAATATAATTTCGGAGGATA
GAAATGATCTGTTTATCAAAAACGAATTAAGAGAAAGCAAACAACATATT
GATAAATCAAAAGGGAATGTGAAATCCGAATGTTCTTCATCACGTGTTGC
CAAAAAAGAAGTGACAGTTGATGGGACGAGTGATGCAATGACTTCCATCG
TATACATGCATCTAGCGGATGATGATTCAGAAGAAATGGTTACGCAACAA
ACAGACCATGCAATCGATATGCAAAAGTGCAATCAAAAGGAAGAATTTCT
GAATGATGCTTCAATTAAAAGTAATTCTGCTGAAAGTATAGTCTCTAAAA
CCGATGCTTCGCACGGAACTTATATCAATGTCGACAAAAGCAATTTGAGA
ACACTTGCTCCAAGACTTCAAACGTTACCACTTTATGCTGGGGCACATGC
TAGTCTAGGGATTGGAAAGTCACTTTTAAAACCAATAAACTATCCTTCGA
ACACCGTACCACTTTTAGAGTCTggtcaattttttgaagttttgggACGA
TGTACACATTGTTTTCGTTTTAGTCGTACGATTTCTTACTGTCGTTCTGA
AAAAAACCATCGCGAGCCAAAGGCCAACGTTTGCGGGGACTGTGAGCAAC
TTGGCTTGAGTACCGTCGTTTGTCGGCGTAAACGTAACCATACGGCACCG
AACGCTCAACCTTTGAATATCGTGATCAACACCGCGTTACAAATTCCTGA
TAACGTCAAGCAATTGTGTATGCGAAATTATTTGCCATCCTGCTTTGCAG
AATTGCACAGCATAGTGATCCATCATGCGGACATAACCTTTGTTGCACCC
AGAAGGAAATCTTGTCCAGCTGATGAAGAGCAGTCGACAACTGATAAAGT
CGCCAATATGCGCAAACCAACTGATTACGCGCGTGGTTATCTTTACCCAT
ACACACCAGAAAGGTGGAAACAATGGCTGAAAGACTTTTCAACAGAAACG
GGCACAAATTACCGTATTCGAACCGGAAAACGCGTCAATAAAAAGATGGA
TCATCACGGACTGGCTAACCACAACGGTAATATCATTTCATACAGTACCA
TAGAAACCCAACTCTATAATTGTGCTTTGGGTGGTCGTCCTAGAAAGCGA
AAACATGTAGAGTCGATACCAAAGCGTAAAGAGAGAGAATCCAAATTGAT
TGGATGTTCTGCAGTGATTCATACGAGATTGCTGGAAACGAAAGACGGCT
GGAAAAGTCTGGAGGTTACTGTTCCAAAACTTTCAGCACATCTACCATTT
CACGACCCAAAAGAATCGGTAGAGGATGAGAGCATTGTACAAACTATTGA
TCATTTTAACCCACCATTGAACTCGCCATCAAATGAAAACCTCACTACGA
CCGAGTTCTTTGATATTGATGTTCAAACTTCAAAAATGACTACTGTCAAC
GAAAAAGAGACTTTAATGAATGAAACACGTAAAAACATAAAACAGTTATT
GCTGACTTCTGCAAGCCTCATTGATTCCATTGACAATCCCAATGTGCTGG
AAGATATTCAAGTCCAATCACAAGACTTCttcgaaaacattttcaaagaa
gCAAAATCAGcgaagaaaatgaaaaggagTAGAAATTCGAACAGTAAAGT
CTCCATCTCTAACGAAAGTGATATtgattaaattattttattaaaattat
attaaagGGAATTCTTGTAAAGCTCGTGAAACAAGTTAATAATCTCACTG
ATAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010406-exon-sc0000106-1491911889:179888..180078 | TCONS_00010406-exon-sc0000106-1491911889:179888..180078 | Clytia hemisphaerica | exon |
| TCONS_00010406-exon-sc0000106-1510915933:179888..180078 | TCONS_00010406-exon-sc0000106-1510915933:179888..180078 | Clytia hemisphaerica | exon |
| TCONS_00010406-exon-sc0000106-1575043694:179888..180078 | TCONS_00010406-exon-sc0000106-1575043694:179888..180078 | Clytia hemisphaerica | exon |
| TCONS_00010406-exon-sc0000106-1491911889:182676..183407 | TCONS_00010406-exon-sc0000106-1491911889:182676..183407 | Clytia hemisphaerica | exon |
| TCONS_00010406-exon-sc0000106-1510915933:182676..183407 | TCONS_00010406-exon-sc0000106-1510915933:182676..183407 | Clytia hemisphaerica | exon |
| TCONS_00010406-exon-sc0000106-1575043694:182676..183407 | TCONS_00010406-exon-sc0000106-1575043694:182676..183407 | Clytia hemisphaerica | exon |
| TCONS_00010406-exon-sc0000106-1491911889:183661..184845 | TCONS_00010406-exon-sc0000106-1491911889:183661..184845 | Clytia hemisphaerica | exon |
| TCONS_00010406-exon-sc0000106-1510915933:183661..184845 | TCONS_00010406-exon-sc0000106-1510915933:183661..184845 | Clytia hemisphaerica | exon |
| TCONS_00010406-exon-sc0000106-1575043694:183661..184845 | TCONS_00010406-exon-sc0000106-1575043694:183661..184845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000106 | supercontig | sc0000106:179888..184845 + |
Blast
The following BLAST results are available for this feature:
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