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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010370 ID=TCONS_00010370|Name=TCONS_00010370|organism=Clytia hemisphaerica|type=transcript|length=1271bp
CCAAATTTATATTCTCCCAACTTCACATTTTTTGGTATATATGTTGCAAA
TTTGATCATTCCATATCAATTTTCCAAAAGATAGAAGCGTAGATATGGCT
CTCAAGTATTTTGTCTTGGCTGTTGCTTTGGCACAGGTCTTCGGCGACCA
ATGGCCGTGCGACCGAAAAGCGGCCATTGCAGCGTTCGAAAAAAAGGAAG
CTGCAACGCACTATACATTTAATGCTAATCCTTACAAAAATCAAACAGCA
GAATCAATGAAGAAGATCATGGCATACCTCAAAGATGATACTTCAGTTTG
cgctttgaaatattttggtcCAGATAAAAAGGTTTATGAAACTAAAACCT
TCAAAGATGAAGCGAGTGCATTGGAAGCTGATTTTATCGTTACTCATCAA
GGTCGATGTGGAGCTTGCTCAACCTTACCTGATCTTGCTGTTTATCTTAA
ACAGAACCTGACTGGTCCCGTCCGCGCGTGTGGTGCACGCACTATCAGTC
CGCTCATTCGTAGATGTTTATACGGTCTTGGTTTTACGTCAACTTGCGTT
GATATCTGGGAATACAACATCAAAAACACGCGTTCAAAATGCTGGTGGAC
TTGCATCAAGAACTGGAGATCAGACTACAACAAACCTGACGGAAGCTTGA
ATGATTGCCTCCAATGTGATGAAGATAACTCGGGCCCAGtctttaaatat
tttgcagGTCGCACAAGACGCAATTCTGGTATTGTCAGTGCTATCCACCG
ACCAAACAGTCAAATCTATCATATGAATCATTGTTATTACTAAAGATTAA
ATTTTTGGATTTGGCTTGAAGAATagataatgaaaatgaaaaattgtaca
aaatctCTCAAAGACGTAATATCAATCCATCTTAATTAAGGTCTGGGGCT
ACTTGAAAcaactttttcatcaaagtgaaactttttgcgagtttcagttt
tcaaatgtttcttaAGAATAAGAGACCTTAAAAGTAATAGCTTTGGAGAT
TTAAAATATGCCATTGTTCCCCAAATACATGTTTGTGTTTGATGCTGGCT
GAGCACAACCCTTTCTCACANTCCCTGTTTATGTTTGATGCTGGCTGAAC
ACAACCCTTTCTAACagacccccttctcacagacccactggaaaaattgg
ctacAATATCATCCCCGAtgggaaattttcttccaatttttgtccccact
gaaaataatcaaataaaccagtcctcactacaaaatattatgttattttt
cccatccccactgaattttct Run BLAST on NCBI protein sequence of TCONS_00010370-protein >TCONS_00010370-protein ID=TCONS_00010370-protein|Name=TCONS_00010370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MALKYFVLAVALAQVFGDQWPCDRKAAIAAFEKKEAATHYTFNANPYKNQ
TAESMKKIMAYLKDDTSVCALKYFGPDKKVYETKTFKDEASALEADFIVT
HQGRCGACSTLPDLAVYLKQNLTGPVRACGARTISPLIRRCLYGLGFTST
CVDIWEYNIKNTRSKCWWTCIKNWRSDYNKPDGSLNDCLQCDEDNSGPVF
KYFAGRTRRNSGIVSAIHRPNSQIYHMNHCYY Run BLAST on NCBI transcript from alignment at sc0000104:594803..596073 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010370 ID=TCONS_00010370|Name=TCONS_00010370|organism=Clytia hemisphaerica|type=transcript|length=1271bp|location=Sequence derived from alignment at sc0000104:594803..596073 (Clytia hemisphaerica)
agaaaattcagtggggatgggaaaaataacataatattttgtagtgagga
ctggtttatttgattattttcagtggggacaaaaattggaagaaaatttc
ccaTCGGGGATGATATTgtagccaatttttccagtgggtctgtgagaagg
gggtctGTTAGAAAGGGTTGTGTTCAGCCAGCATCAAACATAAACAGGGA
NTGTGAGAAAGGGTTGTGCTCAGCCAGCATCAAACACAAACATGTATTTG
GGGAACAATGGCATATTTTAAATCTCCAAAGCTATTACTTTTAAGGTCTC
TTATTCTtaagaaacatttgaaaactgaaactcgcaaaaagtttcacttt
gatgaaaaagttgTTTCAAGTAGCCCCAGACCTTAATTAAGATGGATTGA
TATTACGTCTTTGAGagattttgtacaatttttcattttcattatctATT
CTTCAAGCCAAATCCAAAAATTTAATCTTTAGTAATAACAATGATTCATA
TGATAGATTTGACTGTTTGGTCGGTGGATAGCACTGACAATACCAGAATT
GCGTCTTGTGCGACctgcaaaatatttaaagaCTGGGCCCGAGTTATCTT
CATCACATTGGAGGCAATCATTCAAGCTTCCGTCAGGTTTGTTGTAGTCT
GATCTCCAGTTCTTGATGCAAGTCCACCAGCATTTTGAACGCGTGTTTTT
GATGTTGTATTCCCAGATATCAACGCAAGTTGACGTAAAACCAAGACCGT
ATAAACATCTACGAATGAGCGGACTGATAGTGCGTGCACCACACGCGCGG
ACGGGACCAGTCAGGTTCTGTTTAAGATAAACAGCAAGATCAGGTAAGGT
TGAGCAAGCTCCACATCGACCTTGATGAGTAACGATAAAATCAGCTTCCA
ATGCACTCGCTTCATCTTTGAAGGTTTTAGTTTCATAAACCTTTTTATCT
GgaccaaaatatttcaaagcgCAAACTGAAGTATCATCTTTGAGGTATGC
CATGATCTTCTTCATTGATTCTGCTGTTTGATTTTTGTAAGGATTAGCAT
TAAATGTATAGTGCGTTGCAGCTTCCTTTTTTTCGAACGCTGCAATGGCC
GCTTTTCGGTCGCACGGCCATTGGTCGCCGAAGACCTGTGCCAAAGCAAC
AGCCAAGACAAAATACTTGAGAGCCATATCTACGCTTCTATCTTTTGGAA
AATTGATATGGAATGATCAAATTTGCAACATATATACCAAAAAATGTGAA
GTTGGGAGAATATAAATTTGG Coding sequence (CDS) from alignment at sc0000104:594803..596073 >TCONS_00010370 ID=TCONS_00010370|Name=TCONS_00010370|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at sc0000104:594803..596073 (Clytia hemisphaerica)
TTAGTAATAACAATGATTCATATGATAGATTTGACTGTTTGGTCGGTGGA
TAGCACTGACAATACCAGAATTGCGTCTTGTGCGACctgcaaaatattta
aagaCTGGGCCCGAGTTATCTTCATCACATTGGAGGCAATCATTCAAGCT
TCCGTCAGGTTTGTTGTAGTCTGATCTCCAGTTCTTGATGCAAGTCCACC
AGCATTTTGAACGCGTGTTTTTGATGTTGTATTCCCAGATATCAACGCAA
GTTGACGTAAAACCAAGACCGTATAAACATCTACGAATGAGCGGACTGAT
AGTGCGTGCACCACACGCGCGGACGGGACCAGTCAGGTTCTGTTTAAGAT
AAACAGCAAGATCAGGTAAGGTTGAGCAAGCTCCACATCGACCTTGATGA
GTAACGATAAAATCAGCTTCCAATGCACTCGCTTCATCTTTGAAGGTTTT
AGTTTCATAAACCTTTTTATCTGgaccaaaatatttcaaagcgCAAACTG
AAGTATCATCTTTGAGGTATGCCATGATCTTCTTCATTGATTCTGCTGTT
TGATTTTTGTAAGGATTAGCATTAAATGTATAGTGCGTTGCAGCTTCCTT
TTTTTCGAACGCTGCAATGGCCGCTTTTCGGTCGCACGGCCATTGGTCGC
CGAAGACCTGTGCCAAAGCAACAGCCAAGACAAAATACTTGAGAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010370-exon-sc0000104-1491911889:594803..596073 | TCONS_00010370-exon-sc0000104-1491911889:594803..596073 | Clytia hemisphaerica | exon |
| TCONS_00010370-exon-sc0000104-1510915933:594803..596073 | TCONS_00010370-exon-sc0000104-1510915933:594803..596073 | Clytia hemisphaerica | exon |
| TCONS_00010370-exon-sc0000104-1575043694:594803..596073 | TCONS_00010370-exon-sc0000104-1575043694:594803..596073 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:594803..596073 . |
Blast
The following BLAST results are available for this feature:
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