TCONS_00010366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010366
Unique NameTCONS_00010366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010366 ID=TCONS_00010366|Name=TCONS_00010366|organism=Clytia hemisphaerica|type=transcript|length=639bp
atatgaacacactcgatccgtaacgaaaatcataccggagcgaaacggaa
cggtaacgtgtgaacatggtcacAGAGGCCACTTTTCCGGAAATATTTGA
GGTATTCTAGTACTAAAATGTTTTTGGATAATAAAGAAGAGAGCAAAAGA
TAGATAGAAAAATTCTACAACAGCACTGTATTTATTATAAAACAACAAAG
AGGAAGagtacaaaacaaaatattcgCAATTTACAATTTAGTATAATAAA
AAGCAAGATTTTTCATCATTTCAATCCATCATCCAAAGAAAGGGAACATC
TACCAATAATCCTTTCATAAGATTGTTTTTATTGTGCATTATATCCCCAC
TATATCAAAATAAACTTTGACAATAAGTTCATGctagattttcaataaaa
atcttCTTGAAAGACCTGGATAGTTTAGTTTCACTTCCAAAATACAGATG
GTTCTCTTTGATTCGATTAGTACcaagaattaattttcttcGAATCGACA
CATGAGATCCTGCAACATGTCAATGTGATTCATACTATCCTGCACCAAAA
TTAGACAATTCCATTATATATCCAAACAAAGGGGTTGGACGAACATCTCC
AGGGGGTAATTCGAGCTTAAATTCCAGGGGGTGTAAATt
Run BLAST on NCBI

transcript from alignment at sc0000104:467618..468256

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010366 ID=TCONS_00010366|Name=TCONS_00010366|organism=Clytia hemisphaerica|type=transcript|length=639bp|location=Sequence derived from alignment at sc0000104:467618..468256 (Clytia hemisphaerica)
aATTTACACCCCCTGGAATTTAAGCTCGAATTACCCCCTGGAGATGTTCG
TCCAACCCCTTTGTTTGGATATATAATGGAATTGTCTAATTTTGGTGCAG
GATAGTATGAATCACATTGACATGTTGCAGGATCTCATGTGTCGATTCga
agaaaattaattcttgGTACTAATCGAATCAAAGAGAACCATCTGTATTT
TGGAAGTGAAACTAAACTATCCAGGTCTTTCAAGaagatttttattgaaa
atctagCATGAACTTATTGTCAAAGTTTATTTTGATATAGTGGGGATATA
ATGCACAATAAAAACAATCTTATGAAAGGATTATTGGTAGATGTTCCCTT
TCTTTGGATGATGGATTGAAATGATGAAAAATCTTGCTTTTTATTATACT
AAATTGTAAATTGcgaatattttgttttgtactCTTCCTCTTTGTTGTTT
TATAATAAATACAGTGCTGTTGTAGAATTTTTCTATCTATCTTTTGCTCT
CTTCTTTATTATCCAAAAACATTTTAGTACTAGAATACCTCAAATATTTC
CGGAAAAGTGGCCTCTgtgaccatgttcacacgttaccgttccgtttcgc
tccggtatgattttcgttacggatcgagtgtgttcatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005825XLOC_005825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010366-exon-sc0000104-1491911889:467618..468256TCONS_00010366-exon-sc0000104-1491911889:467618..468256Clytia hemisphaericaexon
TCONS_00010366-exon-sc0000104-1510915933:467618..468256TCONS_00010366-exon-sc0000104-1510915933:467618..468256Clytia hemisphaericaexon
TCONS_00010366-exon-sc0000104-1575043694:467618..468256TCONS_00010366-exon-sc0000104-1575043694:467618..468256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:467618..468256 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.9782	14.225	21.3162	22.9971	15.2038	9.14396	7.95562	6.75281	4.42759	4.33328	3.26001	2.76326	2.20988	1.61894	3.72758	3.67023	6.14202	4.93444	1.42472	1.68909	6.91458	6.0289	10.2829	9.03056	1.62727	3.28805	6.53422	4.95027	5.34251	6.92129
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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