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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010297 ID=TCONS_00010297|Name=TCONS_00010297|organism=Clytia hemisphaerica|type=transcript|length=2112bpRun BLAST on NCBI protein sequence of TCONS_00010297-protein >TCONS_00010297-protein ID=TCONS_00010297-protein|Name=TCONS_00010297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp MIIRDGVFTRSLYVLVLTIVFLISTCSCGGSKKFPLMKRRNQATKDVVTTRun BLAST on NCBI transcript from alignment at sc0000104:162534..175092- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010297 ID=TCONS_00010297|Name=TCONS_00010297|organism=Clytia hemisphaerica|type=transcript|length=12559bp|location=Sequence derived from alignment at sc0000104:162534..175092- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000104:162534..175092- >TCONS_00010297 ID=TCONS_00010297|Name=TCONS_00010297|organism=Clytia hemisphaerica|type=CDS|length=14340bp|location=Sequence derived from alignment at sc0000104:162534..175092- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010297 vs. Swiss-Prot (Human)
Match: BACE1 (Beta-secretase 1 OS=Homo sapiens GN=BACE1 PE=1 SV=3) HSP 1 Score: 386.341 bits (991), Expect = 2.148e-125 Identity = 203/442 (45.93%), Postives = 275/442 (62.22%), Query Frame = 1
Query: 391 VVTTENLKGRPGQGYYIAILFGTPPQRINVLVDTGSSNFAIASRPHPYLPLYFHADQSKTFVPLNRPVAVPYTQGNWQGELGTDFIQFIDALXXXXXXXXALIKSSENFFINGSNWEGILGLGYTHLSKPDSSVIPVFDQFVIDNVVDDTFSMQLCSSSELDPSAE--PTVAGTLVFGETDEDLYKGDLFYTPIVKKWYYEVIITDFAVNGVSLGLNCKKYNYDKTIVDSGTTNLRVPEDVFNAILVHLKKYDRL-GVPDEFWIGRQMMCWNYDKTPWEEFPDMXXXXXXXXXXXKEFILKITPQLYLRETIERGPLPGQHCYKFAITKAERGTVIGAVIMEGFYVVFDRENVQVGFAATTCGAEGRLNPRSSVSGPFNRADPVDCEYIETEPADSALLTVAYVMAGVCGLCLLPVFILLGQASCKRRLVEYDG*KMNDFSL 1707
V +NL+G+ GQGYY+ + G+PPQ +N+LVDTGSSNFA+ + PHP+L Y+ S T+ L + V VPYTQG W+GELGTD + NVTV N+A I S+ FFINGSNWEGILGL Y +++PD S+ P FD V V + FS+QLC + +E +V G+++ G D LY G L+YTPI ++WYYEVII +NG L ++CK+YNYDK+IVDSGTTNLR+P+ VF A + +K PD FW+G Q++CW TPW FP + L +++ F + I PQ YLR +E CYKFAI+++ GTV+GAVIMEGFYVVFDR ++GFA + C ++V GPF D DC Y + +S L+T+AYVMA +C L +LP+ +++ Q C R L + +D SL
Sbjct: 61 VEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFP-VISLYLMGEVTNQSFRITILPQQYLR-PVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFR-TAAVEGPFVTLDMEDCGYNIPQTDESTLMTIAYVMAAICALFMLPLCLMVCQWRCLRCLRQQHDDFADDISL 499 The following BLAST results are available for this feature:
BLAST of TCONS_00010297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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