TCONS_00010266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010266
Unique NameTCONS_00010266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010266 ID=TCONS_00010266|Name=TCONS_00010266|organism=Clytia hemisphaerica|type=transcript|length=1305bp
ttttagcaaaaataaaaaagattgaataaatatttaaaaagaatgTTGAG
CATACAAGACGTATTACGACCAAACATTATCAACATCAATGGACGTCGTT
ATCGACAGCTTCCAATCAAATCATTGAACAATGAGCAGCAAAGTGATTAC
ACAGAAAATCTGGCTTCCTATGTCGAAGAAGaCACGTATTATGACGAACC
GAACACTTGCTCAAACCAACCAGAATGGCAAGTCGAACAGACACACAACG
GTTATGAAATTGTCATTGAAGACTTACCCATGTTTTATTACAAATTCATA
ATTGGTAAAGGTGGAAGCAAGAAGAAAGAGATTGAACGTTCTAGTAATGC
ATCTATTAAACTACCACCAAAAGGAAGCCAAGGAAATTAATCAGCGGACG
TCACAAATGTGATGTAGTGAGCGGACGTAATCAACTTCAAACAATCATTG
ATTTACACCGTACAGAACAACCTGCAACACATTTCCTTTGTATCGCCCTT
GACGCTGACCACATGGATGAGAAGTTTGCAGACTTCAAAGAAAAAGTCCT
CGAACTAAACGCACGAGGTGTTGATGGCAGTATATTTCAAGAGGCTAAAA
GATTACATTTAACACTCTCCTTGACACCTTTCCTGAATGATGCAGAAGTG
aacgAATTGCTACCAACTATCAGTGATACCGTCAATCAAATAAAACAaCA
GTATCTACCTGAAGAATTGGTTAAAATACATTTACGAGGGATCGAATACA
TGAACGATGACCCTGGTGAAGTAGATGTGCTTTACGCAAAAGTCAGTTTG
CCTGATAGTTCAAACAGaCTTCAAAAGTTCGTGGACGAGGTCGTGGATGC
ACTCTCTACAAATGGGTTGGTTAAAAAACAATACGATCACGTCAAACTCC
ACGCTACCATCATGAACACTTTATTTCGTGAAAACAAAACACCCAAAGAA
GAACGAACGCgcaatcaaaaattcaaagaacGGGTTACTTTTGACGCGAC
CAAGATTCTTGAATTGTATGGTGATTACGTGTTTGGTGAGGTGACTTTCA
ATAAGTTGGATATCTCACTCAAAGGAAGCTACGATAAAGATGGACGTTAC
AAAAGAGTGGTGTCCATACCTCTGTTGAGCAAATCGTAACATGAAACAAT
GATTTGTCAATCAgccattccattaaatttccatacagagGGGGGGGGGA
Tggggacgaaccttttcaagtcaaaaaacatttcatggaaatgtgtggat
acccccttgaaaatgacaaaattagcaaataaaaccttggaaaatttatt
ttcac
Run BLAST on NCBI

transcript from alignment at sc0000104:458301..466568+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010266 ID=TCONS_00010266|Name=TCONS_00010266|organism=Clytia hemisphaerica|type=transcript|length=8268bp|location=Sequence derived from alignment at sc0000104:458301..466568+ (Clytia hemisphaerica)
ttttagcaaaaataaaaaagattgaataaatatttaaaaagaatgTTGAG
CATACAAGACGTATTACGACCAAACATTATCAACATCAATGGACGTCGTT
ATCGACAGCTTCCAATCAAATCATTGAACAATGAGCAGCAAAGTGATTAC
ACAGAAAATCTGGCTTCCTATGTCGAAGAAGGTAACTTTAATAGTTTAGT
TTTCATCTCGTCGACAAATGTTCTTTGTCCGACCTTACTCCCTTTTTTAC
AAGCTCCGACAACCGAGCTTTTTTACATTCACGGAAGAagtttcagaggg
aatttaatttggcggatggtgtggttcaaatttaaaattaatgtgaaaat
gttcaaaatagcTCCTTTTATGACCcaaattgtgaaaaattgagcaaaat
ttgataaaattttaatttggagggaatttaatttggtgggtGGCgggaaa
gttttaattttttgggaacttaatttggcgaattttggccaaaaccgcca
aatccgccaaattttcttcctttaaggcaTTTTCTTTGACTTCTTTTTTA
CTGATTATGAAATGATCAGGGCTAAGTTGCAGAAATCCAACTCATTGAAT
GTCATTCTTAGAATTTGTTTGAAGTAATTCctgcaaaatgtcattttcta
atttattttcaataattttttcatagaCACGTATTATGACGAACCGAACA
CTTGCTCAAACCAACCAGAATGGCAAGTCGAACAGACACACAACGGTTAT
GAAATTGTCATTGAAGACTTACCCATGTTTTATTACAAATTCATAATTGG
TAAAGGTGGAAGCAAGAAGAAAGAGATTGAACGTTCTAGTAATGCATCTA
TTAAACTACCACCAAAAGGAAGCCAAGGAAATGTGAGTAAGTTTCTGATT
CAGAATTTAAACCTTTATACCTTAAATCCTCGAgtaagcgccccgcttga
ataagcgccctgctcaaataagcgccccccttttagttaaaataatatta
taaccGCCCCGCTcaaataagcgcccccctttgaataagcgccccctccA
GGGAagggcgcttattcgaatttTGTTATAgattgaataagatattgagt
agatacttgtgtcttaaaaagaaagaaagcgattaagaataaaatgatag
aaattatcaattggatttttctaatttttcttttattcgtgcttttttga
aaaatcaaccctttgaaacagctaagtttaagcagattccgaatttgttg
atatacgaatttctgaaataaaaaaataagcgccccgctcgaataagcgc
cccccttagagcctgaaaaattaaataagcgcccgggcgcttattcgagg
atttacggtagTAACTGGTGATTAtaagtcaaaatttggattttggtaAT
TAGTTATATGCCATCATTAATTGCCGCTATTAATTGCAGTCATTCAGTAA
CTTCAAATTTccaaatattatttttgatttcaaatgagAAAACACGCCGA
GCTCTAGTGCTTTTTTTGGGTGGGATCAAAAATAGGACAACATGGGTCGT
GTCCAGTACTCTAAAAAGATTGATGTCAGTGGTACTCTGTTCGACTTTGG
ACCAATTACCTGGCTTTGGACTTAAACATTCTGTGCAATTAATCCGATTC
TACTATTGATATTGCAAATTTTAAAAGTGTGAGCCTGCATCAGGGAGCAA
ATGAGTCAACTTTCCAAGCATTTTTAACATTATAATGCAAATGAATGTCT
TGAGCTGAACTGCAAAGGTTTGAGTGTGGGTTAGAAAAATAAACTAGGAG
ATTTCCGAGTATTTTAAGTACTGTTATGCGGTGcaaactttcatttttga
cTGATTTAGCGGGTGGATTTGAAATATGGGTGATATATATCTTCACTATG
ATGAGTGAAAGGTTTTTTAACAAGGTAAGATAatgattgttttatttttt
gttccaGTAATCAGCGGACGTCACAAATGTGATGTAGTGAGCGGACGTAA
TCAACTTCAAACAATCATTGATTTACACCGTACAGAACAACCTGCAACAC
ATTTCCTTTGTATCGCCCTTGACGCTGACCACATGGATGAGAAGTTTGCA
GACTTCAAAGAAAAAGTCCTCGAACTAAACGTTTGTATTTATTTGACCTc
tatcaaaatatatttatcCTGACGCATTAACTTTGACttagtttaatttt
taattggtcagccccggtgacccttcaaatccctttcacgatttttttcc
cgGAGGTCGTCGTCAAGACTTTCAAGTTTGAATCCGATTTCGGATTANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNgaaaaatattttttcttggaagagaaaagaaacacataacttcatt
aaaagatttgcgcataataataaaagaacactataattaaaaagaagaaa
gtgaaaaacaattttttttgtttattcaataaattgaaagaagctattgt
attgtaaataaatagagggtgtaaaagaaagttttttatgattgattttg
aggctttcttgtctggagagtttttggacctaccccggtggaggtcctat
aaattaacctttgtccgtctgtccgtccgtccgttagttaccagcttttc
tcatgattggctcattagttttttctgattttttgcacaatgatgcaaaa
tggcaatgcccaaaatgtgacggagcctgattttcgaaaaaaaaaatttt
tgggcaaatttgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaaaca
aacgactaattttaatagatcgtcactatttgtgttctgaatgattgttt
aatggtcacgtcacgtagatatcaattataaacgtgttaaatgcacaatc
caggtaggtccatcaaagtatcacttgttgtatGTAAGAAAGGAATGTCA
AAGTGTGGCGTAACATAAACTTAGAATCGTCATAACTTNagcattgtaaa
taaatagagggtgtaaaagaaagttttttatgattggttttgagGCTTTC
TTGTCTGGAGAGTTTTTGTATGTAAGAAAGGAACGTCAAAGTGTGGTGTA
ACATAAACTTAGAAtcgccataacttttgattgcgttatcgaaactggac
ggaatttCCTAAGCAGCTTCCTCAATATAAAATGCCCCTATTCATTCACA
TTATACTAGGTTCAACACGCCatttaaatcaatctgaatcaattgACTTT
GTGATTACTAGACAGCTAACCGTGCCCCGGGGGAGGGGNATCTGAATCAA
TTGACTATGTGATTACTAGACAGCTAACCGTGCCCCGGGGGAGGCacctt
aggcaaaattgggtacggggacgtgccactTATCAGGAtttcttttttag
gctctgaagatatctgacaggttcccaaatttactaattttcaagttGTG
TATCTGATAGGgtcgattttttattattttggacaattttttaggatgga
aaacagaaaatctttcaaattttcgtctacttttattttcaaggcgaaaa
taggaaaaattttgaatttttcgttttgacaagtgccccccccccccNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTTTTAGGATGGAAaa
cacaaaatctttcaaattttcgtctacttttattttcagggcgaaaatgg
gaaaaattttgaatttttcgttttgacaagtgccccccccccggaaccGT
GCACACTCAACTACTCAACTATAAACGAAGGGCGGCCTTGACTggataga
aaaaaaatcaacataaaaatgccaaaaGTGAACAAAACTGACGAAAGCCG
CAGTGAACATATTATAAAGCGGCCACCTCGGATACTTTCTCAGAGAATAA
AGAACAGGTTTAAGACATTCTAACGAAAAGATTTATGTGAAATTCCAAGG
ATGAAATAATCCGATCACATCTCTGTCTGCTTTGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAATTCAACtttgtgttaaactttttttt
gtctgaagttcaaccaaaatgagctttttaacctctttggctttaacatc
gaattaggtttcttgattgtacttccttctaatcgttttaagcttattgg
gctgaccttccagcgcagctggtttatttgaaTTGAAATGCTTTGTAACA
GCCCAAGAATCTAATCGATTGTACTCTAAACTTagtgaaaaaaagaattg
aaattttctctTTCAGGCACGAGGTGTTGATGGCAGTATATTTCAAGAGG
CTAAAAGATTACATTTAACACTCTCCTTGACACCTTTCCTGAATGATGCA
GAAGTGGTAAGTTTTGTGCTGTTCTTCTAGAAAAGAATATTGACATTGGG
ACGTTCCTTCCTTGATTTTGcctaaaggttttgttttcttttgttttcac
acgcttttttatgagaatatcaggtttaaaattggccaaatcgtaggaat
accctaagaataccctttaagaatttgataagaatacagtcatttcgTAT
TTGGTTAAAAGAAGAAACCGATTTTTTTGTTCGACTTGAATTGcaacttt
gaggcagaaatataattttgactCCTAATAATGTGTATTCTAAAGTccca
aactctcaaattgatcatttctcgtGTTTGTATGAAAgtcaaatctaaaa
aaagtaagaataagttaagaatatttcaccctcaattttggcaatttatt
tTAAGagtacttgaccctcatccaaagtgcACTTTTTatgatatgatttt
ttttcagaacgAATTGCTACCAACTATCAGTGATACCGTCAATCAAATAA
AACAGTAAGAATTTCACCTGACCAATTATTCTACTTGGATTGTTTCAGCA
AATTATCTATCTTTCATGGTTCTTCCTATTACGATACCTTAATCTATCTT
TCCTTGACAGAATTACTGCTCATTTCTAAAACACTCCTTTTCATTATCCC
CAAAACAAACTAAAAGCTAACAGTTTTGTAgtagaattatttttttctgt
agaCAGTATCTACCTGAAGAATTGGTTAAAATACATTTACGAGGGATCGA
ATACATGAACGATGACCCTGGTGAAGTAGATGTGCTTTACGCAAAAGTCA
GTTTGCCTGATAGTTCAAACAGGTAGGCAAGCTTGTAACTTTGTGATCTT
CTGTTTGAGTGCTACCCAAGCGCTTCGCTTTAGCATTCAAGGCAAGCTCT
CCCTTGTATTGACAACTTAGTGTTGCCTTATTAagagaattaattttctt
caatAAGTTTACTTTTCTTTGTACTTGCATAAAATGGTTTCCTTTTTCCT
GGCCCCTGGCAGATCCTTCTGTGGAAATTTGTCACTTATATCTCTGCTTT
CTTACGGGTTTGAATTGTGATGAGACAAACTTTAAGAATAAgataaaaat
tgatatgataGATATTGAAACTTGTTGGTACTTGCTTTCTTTAATATAAT
TCTCGTGTTTGGAAAATTGGGTCGGTAGCGAGTGTTTCCCAAGGCGGGAA
TCGATCTTAACTTCAGCATTTCACATTTGTAATAatcttgttttcttttc
agaCTTCAAAAGTTCGTGGACGAGGTCGTGGATGCACTCTCTACAAATGG
GTTGGTTAAAAAACAATACGATCACGTCAAACTCCACGCTACCATCATGA
ACACTTTATTTCGTGAAAACAAAACACCCAAAGAAGAACGAACGCgcaat
caaaaattcaaagaacGGGTTACTTTTGACGCGACCAAGATTCTTGAAGT
AAGCCTATCTTCTGCAATTCTGTTGATTCGATTGTGTTGCTTTTGTGATC
TTGATTTGTATAGGTGTGCTGAAGAATTTTCCGTTTCGATGGGACGAGCT
GAGCAGTAAATTTTATCATAAAACAATAATTTGATTGCATTTCTTGTTAA
GAAAAAAGCCTTTCAGGTTTGCTAAGATAGTTCTAACCATCATTTTGATC
TACTAGTATTTGGGATAGGCACACAGACAGATTGTCCGATTAAATTTAGT
TTTAACatctttgtttttcttgctAGTTGTATGGTGATTACGTGTTTGGT
GAGGTGACTTTCAATAAGTTGGATATCTCACTCAAAGGAAGCTACGATAA
AGATGGACGTTACAAAAGAGTGGTGTCCATACCTCTGTTGAGCAAATCGT
AACATGAAACAATGATTTGTCAATCAgccattccattaaatttccataca
gagGGGGGGGGGATggggacgaaccttttcaagtcaaaaaacatttcatg
gaaatgtgtggatacccccttgaaaatgacaaaattagcaaataaaacct
tggaaaatttattttcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005773XLOC_005773Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010266-exon-sc0000104-1491911889:458301..458481TCONS_00010266-exon-sc0000104-1491911889:458301..458481Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1510915933:458301..458481TCONS_00010266-exon-sc0000104-1510915933:458301..458481Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1575043694:458301..458481TCONS_00010266-exon-sc0000104-1575043694:458301..458481Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1491911889:458977..459182TCONS_00010266-exon-sc0000104-1491911889:458977..459182Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1510915933:458977..459182TCONS_00010266-exon-sc0000104-1510915933:458977..459182Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1575043694:458977..459182TCONS_00010266-exon-sc0000104-1575043694:458977..459182Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1491911889:460258..460430TCONS_00010266-exon-sc0000104-1491911889:460258..460430Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1510915933:460258..460430TCONS_00010266-exon-sc0000104-1510915933:460258..460430Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1575043694:460258..460430TCONS_00010266-exon-sc0000104-1575043694:460258..460430Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1491911889:464467..464556TCONS_00010266-exon-sc0000104-1491911889:464467..464556Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1510915933:464467..464556TCONS_00010266-exon-sc0000104-1510915933:464467..464556Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1575043694:464467..464556TCONS_00010266-exon-sc0000104-1575043694:464467..464556Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1491911889:465008..465054TCONS_00010266-exon-sc0000104-1491911889:465008..465054Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1510915933:465008..465054TCONS_00010266-exon-sc0000104-1510915933:465008..465054Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1575043694:465008..465054TCONS_00010266-exon-sc0000104-1575043694:465008..465054Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1491911889:465253..465372TCONS_00010266-exon-sc0000104-1491911889:465253..465372Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1510915933:465253..465372TCONS_00010266-exon-sc0000104-1510915933:465253..465372Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1575043694:465253..465372TCONS_00010266-exon-sc0000104-1575043694:465253..465372Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1491911889:465803..465998TCONS_00010266-exon-sc0000104-1491911889:465803..465998Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1510915933:465803..465998TCONS_00010266-exon-sc0000104-1510915933:465803..465998Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1575043694:465803..465998TCONS_00010266-exon-sc0000104-1575043694:465803..465998Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1491911889:466277..466568TCONS_00010266-exon-sc0000104-1491911889:466277..466568Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1510915933:466277..466568TCONS_00010266-exon-sc0000104-1510915933:466277..466568Clytia hemisphaericaexon
TCONS_00010266-exon-sc0000104-1575043694:466277..466568TCONS_00010266-exon-sc0000104-1575043694:466277..466568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:458301..466568 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.74933	4.20813	1.828	2.63421	9.15999	2.44463	7.87983	3.99767	0.811023	0.594214	3.63834	1.74208	1.73847	0.736786	2.71453	2.79487	4.00636	4.50512	1.40963	0	1.36516	1.6256	2.03947	0.636698	3.69053	3.17353	0	0	1.09481	0.738217
Blast
[Close]
BLAST of TCONS_00010266 vs. Swiss-Prot (Human)
Match: ASCC1 (Activating signal cointegrator 1 complex subunit 1 OS=Homo sapiens GN=ASCC1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.418e-46
Identity = 99/275 (36.00%), Postives = 157/275 (57.09%), Query Frame = 3 
Query:  387 LISGRHKCDVVSGRNQLQTIIDLHRTEQPATHFLCIALDADHMDEKFADFKEKVLELNA--RGVDGSIFQEAKRLHLTLSLTPFLNDAEVNELLPTISDTVNQIKQQYLPE----ELVKIHLRGIEYMNDDPGEVDVLYAKVSLPDSSNRLQKFVDEVVDALSTNGLVKKQYDHVKLHATIMNTLFRENKTPKEERTRNQK-------FKERVTFDATKILELYG---DYVFGEVTFNKLDISLKGSYDKDGRYKRVVSIPLLSKS*HETMICQS 1163
            +I+G+H+  V+S R ++  ++D  R +QP THFL   L+   + E F  F+E+VL   +   GVD SIFQ  K+LHLT+ +   L++ E+ +      + + Q K++++ +    + +++ + GIEYMNDDPG VDVLYAKV + D SNRLQ+ VD V++    +GL+ K+++ VKLHAT+MNTLFR  K P  E   N         FKER +FD   IL+ +       + +      ++ L GS D      +V  I  +S +  +++  +S
Sbjct:  132 VITGQHRNGVISARTRIDVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQ----TCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFR--KDPNAEGRYNLYTAEGKYIFKERESFDGRNILKSFALLPRLEYNDAISAHCNLCLPGSSDSPASASQVAGITGVSDAYSQSLPGKS 400
The following BLAST results are available for this feature:
BLAST of TCONS_00010266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASCC12.418e-4636.00Activating signal cointegrator 1 complex subunit 1... [more]
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