TCONS_00010236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010236
Unique NameTCONS_00010236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length563

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010236 ID=TCONS_00010236|Name=TCONS_00010236|organism=Clytia hemisphaerica|type=transcript|length=563bp
GAAACAGCAAGTAATATGGTTGATAAGGCAATCGAGTGCAATTTTACCCA
GACTCGACCTCCGAAAACCAAGACAATCAAGACTAGATCCATCCGAACAC
AATACAATAGGCTTGACATAGTGGAAAATATTGTGAAGCCTGTGTCATCA
AACAACcctgtcaaaatcaaaataccaATACCAAAGAAAACGAAAAGAGT
AAGTATTGGCATCAACACCGAATTAACGTTCCATTGCGATGACAATATCT
GTATCGTTAAAGCGCCTAAAGGAAAAAGTGAACATTTTGATATTTCGGAG
AGTGGTGGCAATACTGATGAGTCAAATGAATCCCCTGATGAAGAGCCTGA
TGAACCGGATAACATTAAAAACGATCCTGATTTCGAGCCAGAAAAGATTG
AAGAGCAAGAGGACTTACCCAAAGATACcaaattaattgtttttttggac
GTGTTTATTACCACTCTTGCAAGTTTGTATGATATGCCGCCAGCTAGCAT
TtgttaaaaaaacgttttttaaagGAACCCAAGTCATTGTAGACTTAGTT
TGTCAAAACGGAC
Run BLAST on NCBI

protein sequence of TCONS_00010236-protein

>TCONS_00010236-protein ID=TCONS_00010236-protein|Name=TCONS_00010236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
ETASNMVDKAIECNFTQTRPPKTKTIKTRSIRTQYNRLDIVENIVKPVSS
NNPVKIKIPIPKKTKRVSIGINTELTFHCDDNICIVKAPKGKSEHFDISE
SGGNTDESNESPDEEPDEPDNIKNDPDFEPEKIEEQEDLPKDTKLIVFLD
VFITTLASLYDMPPASIC
Run BLAST on NCBI

transcript from alignment at sc0000103:548401..548963

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010236 ID=TCONS_00010236|Name=TCONS_00010236|organism=Clytia hemisphaerica|type=transcript|length=563bp|location=Sequence derived from alignment at sc0000103:548401..548963 (Clytia hemisphaerica)
GTCCGTTTTGACAAACTAAGTCTACAATGACTTGGGTTCctttaaaaaac
gtttttttaacaAATGCTAGCTGGCGGCATATCATACAAACTTGCAAGAG
TGGTAATAAACACgtccaaaaaaacaattaatttgGTATCTTTGGGTAAG
TCCTCTTGCTCTTCAATCTTTTCTGGCTCGAAATCAGGATCGTTTTTAAT
GTTATCCGGTTCATCAGGCTCTTCATCAGGGGATTCATTTGACTCATCAG
TATTGCCACCACTCTCCGAAATATCAAAATGTTCACTTTTTCCTTTAGGC
GCTTTAACGATACAGATATTGTCATCGCAATGGAACGTTAATTCGGTGTT
GATGCCAATACTTACTCTTTTCGTTTTCTTTGGTATtggtattttgattt
tgacaggGTTGTTTGATGACACAGGCTTCACAATATTTTCCACTATGTCA
AGCCTATTGTATTGTGTTCGGATGGATCTAGTCTTGATTGTCTTGGTTTT
CGGAGGTCGAGTCTGGGTAAAATTGCACTCGATTGCCTTATCAACCATAT
TACTTGCTGTTTC

Coding sequence (CDS) from alignment at sc0000103:548401..548963

>TCONS_00010236 ID=TCONS_00010236|Name=TCONS_00010236|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000103:548401..548963 (Clytia hemisphaerica)
ttaacaAATGCTAGCTGGCGGCATATCATACAAACTTGCAAGAGTGGTAA
TAAACACgtccaaaaaaacaattaatttgGTATCTTTGGGTAAGTCCTCT
TGCTCTTCAATCTTTTCTGGCTCGAAATCAGGATCGTTTTTAATGTTATC
CGGTTCATCAGGCTCTTCATCAGGGGATTCATTTGACTCATCAGTATTGC
CACCACTCTCCGAAATATCAAAATGTTCACTTTTTCCTTTAGGCGCTTTA
ACGATACAGATATTGTCATCGCAATGGAACGTTAATTCGGTGTTGATGCC
AATACTTACTCTTTTCGTTTTCTTTGGTATtggtattttgattttgacag
gGTTGTTTGATGACACAGGCTTCACAATATTTTCCACTATGTCAAGCCTA
TTGTATTGTGTTCGGATGGATCTAGTCTTGATTGTCTTGGTTTTCGGAGG
TCGAGTCTGGGTAAAATTGCACTCGATTGCCTTATCAACCATATTACTTG
CTGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005754XLOC_005754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010236-exon-sc0000103-1491911889:548401..548963TCONS_00010236-exon-sc0000103-1491911889:548401..548963Clytia hemisphaericaexon
TCONS_00010236-exon-sc0000103-1510915933:548401..548963TCONS_00010236-exon-sc0000103-1510915933:548401..548963Clytia hemisphaericaexon
TCONS_00010236-exon-sc0000103-1575043694:548401..548963TCONS_00010236-exon-sc0000103-1575043694:548401..548963Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010236-proteinTCONS_00010236-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:548401..548963 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.226948	0.111016	0.270304	0.106799	0.257696	0.120626	0.0844531	0.418435	0.101536	0.400474	0.199959	0.830637	0	0.366426	0.601876	0.925355	1.70457	1.00334	0.48449	0.708952	0.574549	0.313409	0.107601	0.192063	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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