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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010194 ID=TCONS_00010194|Name=TCONS_00010194|organism=Clytia hemisphaerica|type=transcript|length=1281bp
AGCAGAACCAGTGATTTACcccaaaatgaaaattctgatTCAGTATTTTC
AATTCCTATAGCTAATAGTAATCTTGAACACCGGAAAAAATCTCTCTTGg
gataatttattttgaaatgaagtaatttttttgacactaaaaACTTTATT
GGTTTATTgattttaaacttaaaattctaaatttagaaaaaataaaagaa
caaaaaatattcaacaaaaaaataattcagaagaAGAAATGAGAAGAGCA
GGGAGTTATGGCCAACCCTCAGGTTATCAAAACAATTATCAAATGGTCGA
GGAAGAAAATGACAATATGACTGAAAATCTCTTCGGAAAAGTCAAAGAAC
TCAAAGATttaACCATTGACATTGGGAATGAAGTGAGACATCAAAACAAG
ATGCTAAATGAGATGGATGAGGAGTTTGACGGCGTTGGATCGTTCTTACA
AGGAACAATGGGACGATTAAAAGCGTTGACGAAAAAAGGTTATCATAAGA
ACTTGATGTATGTCATCCTCTTCTGCTTTGTCGTCCTTTTTGTCACATGG
TTCATCGTCCGATTCCGATAGCGAACCCGATTTCAATGATCAACCTGATT
CTGATGTAGTGATTTCGATAATGAACCCGATTTCGATATAGCGATTCGGA
GTAGAGTACCTGATTCCAATAAAgaggtttttcaattttgatttacttCC
GACGCCATTATGTAAGCAAACATTCGATCTGCGTTATCAGTCACATTTAT
TAATTAGGATATATGATTTTATAATGGCGGATTATGACTTTAGCAAAAGC
TGAAAAACCGCAACTATGATTCCAATAGAGCACCTGATATGAATATTGAT
GGTCTGGTAGAAGAGACTTCTCTACGTTGAAAATAGTCAGTCGTCTTGCT
TTGGCTCAACCACGGTTTCGTAGAATGATTGACCctaagtttttcatttt
gctcGGAAGTGGATATTGGGCTGAAGACTTGAATCAACGACAGGATATTT
TCAACCTTCATTATCGTAGTTATTTGGAGGTTGGAATGCGTCAAAAGTCA
TGGAACAAATGGATGTGATGGTTTCACGGAAGCTAGCTTGGGCTAAATTA
TTGACCTATGATTTTTTGAGGAAGTCATAAATGTATCCTGTAATATCAAA
AAGTTTGATCTAGCGAAAATTCATGAAACTAGTataaacaagcgatactt
ttatggacctacctggttatcaaactaatcagtgaacattgaaacacata
agacataactggtcaaaatacaaaaaaaaat Run BLAST on NCBI protein sequence of TCONS_00010194-protein >TCONS_00010194-protein ID=TCONS_00010194-protein|Name=TCONS_00010194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MRRAGSYGQPSGYQNNYQMVEEENDNMTENLFGKVKELKDLTIDIGNEVR
HQNKMLNEMDEEFDGVGSFLQGTMGRLKALTKKGYHKNLMYVILFCFVVL
FVTWFIVRFR Run BLAST on NCBI transcript from alignment at sc0000103:120002..125222- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010194 ID=TCONS_00010194|Name=TCONS_00010194|organism=Clytia hemisphaerica|type=transcript|length=5221bp|location=Sequence derived from alignment at sc0000103:120002..125222- (Clytia hemisphaerica)
AGCAGAACCAGTGATTTACCCCAAAATGAAAATTCTGATTCAGTATTTTC
AATTCCTATAGCTAATAGTAATCTTGAACACCGGAAAAAATCTCTCTTGG
GATAATTTATTTTGAAATGAAGTAATTTTTTTGACACTAAAAACTTTATT
GGTTTATTGATTTTAAACTTAAAATTCTAAATTTAGAAAAAATAAAAGAA
CAAAAAATATTCAACAAAAAAATAATTCAGAAGAAGAAATGAGAAGAGCA
GGGAGTAAGTCTTCTTTTTATTTTATTTTTGGCAGATACAGAAGTAACCT
TTCAGAATACATGTTCTTATCGTCTAGGAGACCACATGACATGAACTTTC
ATTGCTTTTATTCTAATGATGTGTTCTTATTTCTAAAGTAAAACATATAT
ACACTCGAAACACATAGAAAAATAGGCCTAGGAGAGGCAGCTTTCGTGTT
GTTTTATTCGTATTTTTGTATTTGAGAAAATGAAAAGAATTAATTGACAA
ATGCAGAGTAAATAGAATTTAGTAGTGCTCTTTTATCTTGTTAGAATTTG
AAAATTACGCACTTTGTTTCATTTGGAACTGCTTCTTTTGGTTGTTCAGG
TTATGGCCAACCCTCAGGTTATCAAAACAATTATCAAATGGTCGAGGAAG
AAAATGACAATATGACTGAAAATCTCTTCGGAAAAGTCAAAGAACTCAAA
GATGTGAGTGGAAAGGTTTTTTATTGTATTTACACTAATGAAACCTCTCT
GGAAAAAAGTCACGGAACTCAAAAGTCGAAAAAGTCTTTATTGCATTTGT
ATCAAAACCATTTTTGGTAAAAGTCAAGGAACTCAAAATTGTGAGGGAAA
AATTTTATTACATTTACCCTTAAAACAAATTAACATTTGTGAGGGAGGAA
GACCTTTTTTCTGCATTTTCACCCTTACGAAAGCTTTGCTAGGAAAGTTA
ACAAAGCACAAGGTTTTTTTTTTTTCAACTTCTAAACTTTTACTCGGTAG
CAACAGGCTGTTTGATCATCCTGTCATTGTGTATTATGACTGATTTCTAA
CTACTTGACTTAACCTAAAACGAAATAACGAAAGTGAGTCCAGCTTCTGA
GCTGACTAGTCCACCATTTTGTTTTCTGCTTGACGACCTATGGAATTTGA
ATGTTTTGAGATTCGAACGTTTAGAGATCTATGGTAAATTAGAAAACAAG
TTGGCAGACTAGTCGACTTTAACACTAGACACACTTCAACGGGAAATCTG
TGTGAGGTTAGCATATTTAGTGTGTGTAAAGGAATATTGTTTCATGTTCT
TTCAAGTTTTCATTACCTTTTGTTTTGTTTTTAGTTAACCATTGACATTG
GGAATGAAGTGAGACATCAAAACAAGATGCTAAATGAGATGGTATGTTAT
CTCCTTCACACATTTTTCACTATATATAACGATGGAACAGATAAAATAAA
GAAAATTAATATCATGAAATTCTGACTGATATATAACGATGGAACAGATA
AAATAAAGAAAATTAATATCATGAAATCCTGACTGATATATAACGATGGA
ACAGATAAAATAAAGAAAATTAATCTCACGAAATCCTGACTGATATATAA
CGATTGAACAGATAGAATAAAGAAAATTAATCTCACGAAATCCTGACTGA
TATATAACGATTGAACAGATAGAATAAAGAAAATTAATCTCACGAAATCC
TGACTGATATATAACGATTGAACAGATAGAATAAAGAAAATTAATCTCAC
GAAATCCTGACTGATATATAACGATTGAACAGATAGAATAAAGAAAATTA
ATCTCACGAAATCCTGACTGATATATAACGATTGAACAGATAGAATAAAG
AAAATTAATCTCACGAAATCCTGACTGATATATAACGATTGAACAGATAG
AATAAAGAAAATTAATCTCACGAAATCCTGACTGATATATAACGATTGAA
CAGATAGAATAAAGAAAATTAATCTCACGAAATCCTGACTGATATATAAC
GATTGAACAGATAGAATAAAGAAAATTAATCTCACGAAATCCTGACTGAT
ATATAACGATTGAACAGATAGAATAAAGAAAATTAATCTCACGAAATCCT
GACTGATATATAACGATTGAACAGATAGAATAAAGAAAATTAATCTCACG
AAATCCTGACTGATATATAACGATTGAACAGATAGAATAAAGAAAATTAA
TCTCACGAAATCCTGACTGATATATAACGATTGAACAGATAGAATAAAGA
AAATTAATCTCACGAAATCCTGACTGATATATAACGATTGAACAGATAGA
ATAAAGAAAATTAATCTCACGAAATCCTGACTGATATATAACGATTGAAC
AGATAGAATAAAGAAAATTAATCTCACGAAATCCTGACTGATATATAACG
ATTGAACAGATAGAATAAAGAAAATTAATCTCACGAAATCCTGACTGATA
TATAACGATTGAACAGATAGAATAAAGAAAATTAATCTCACGAAATCCTG
ACTGATATATAACGATTGAACAGATAGAATAAAGAAAATTAATCTCACGA
AATCCTGACTGATATATAACGATTGAACAGATAGAATAAAGAAAATTAAT
CTCACGAAATCCTGACTGATATATAACGATTGAACAGATAGAATAAAGAA
AATTAATCTCACGAAATCCTGACTGATATATAACGATTGAACAGATAGAA
TAAAGAAAATTAATCTCATGAAATCCCGCCTGAGATATAACGATGTAACA
GATAAAATAAAGAAAATTAATCTCATGAAATCCTGACTGATATATAACGA
TGGAACAGATAAAATAAAGAAAATTAAAGTCTATTCACGATAAGTGTGCA
CTCTTTTTTCTTTCACATATAACTTTTGAAGGAATTCTTCAATCTTTTTA
AATTTGGTATCATTGGAAAGATATTAGTGAGTGGAACAATTTGAAATAAA
AAAATCTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGATCTTAGG
AGATCATCACTGTGAAAAAATTTCATTAAAATATTTATTCAATATAAAGT
TATGATACAAAGTTAATAAGTGATTGACCCCAAAAAAACAGTAAAAAACT
GCAGAAAACAGCGTTTTTAGACGTCAATTAGCTTATAACTTTATTTGATA
TCTTTTGACTGAATGATTATTTTTGAGAATTTTTTTCACAGGGATGACGT
TCGATGATTAAGGATTCATTTCAGTGAGAATGATAGTTATAGCACTTTTC
TACAAGATCTTCATTATTTTCTTCTTCATTTTCATCTTCATTTTTATAAT
TTTTTTAAAGTTTGTTTTATTTTAAATTGTTCCACTCAGTAATATCTTTC
CGATGATACCAAATTTATAAAGATTGAAGAATTCCTTCAAAAGTTATAGG
TAAATGAAAAAAGAGTGCACACTTATCGTGAATAGACTTTAATATCATGA
AATCCTGACTGATATATAACGATGGAACAGATAAAATAAAGAAAATTAAT
ATCATGAAATCCTGACTGATATATAACGATGGAACAGATAAAATAAAGAA
AATTAATCTCATGAAATCCTGACTGAGGGGTTAAGTCTCAAATTCTTCTA
GGCTTCTAGGCTTATTGCTCCCGCAACTTCCTCAATTATGGAAGCAAACT
TCTATGTGTAAACAATGACTTCTTTGAATACGGAAGTAAAAGTGGTACCC
ACAACAAAGTCACTGCAGTGTTAAAGCTTTACCTCACGTTCAACGGTGCT
ACATCACAAGTGTACAAGAAAAAGTAAAGATCTAGCACTCTCAATACATT
ACACCGCTATTGAGTAGTGCTACCATTGGGTACCACTACAAAACTCCAAT
CAAAAACCATATTGTTTGACTGAGATTGAGAGAAAATTCAAGGTTTATAC
AAAGTGACGTGGTAAAACCTCTCTAACCGGTCATTCTAGAATAAGGGGTA
CGTTACGCCACGCTTATTTCTGACAGGATATCGCCAGTAGGGACCTTGGG
GCGCCGTGACCCATGCACCATTTGGTAGCACCCATAGAGGCGGTTCAATC
GGGCATAAACTTTCTCCAATCATGGTTGACAAGTTCTTAGAAAAACCTCT
ATAACTGAGCATCTGTAGATTTAACAGGATTCATTCTCCCTTTTTCTTCA
CGCAGGATGAGGAGTTTGACGGCGTTGGATCGTTCTTACAAGGAACAATG
GGACGATTAAAAGCGTTGACGAAAAAAGGTTATCATAAGAACTTGATGTA
TGTCATCCTCTTCTGCTTTGTCGTCCTTTTTGTCACATGGTTCATCGTCC
GATTCCGATAGCGAACCCGATTTCAATGATCAACCTGATTCTGATGTAGT
GATTTCGATAATGAACCCGATTTCGATATAGCGATTCGGAGTAGAGTACC
TGATTCCAATAAAGAGGTTTTTCAATTTTGATTTACTTCCGACGCCATTA
TGTAAGCAAACATTCGATCTGCGTTATCAGTCACATTTATTAATTAGGAT
ATATGATTTTATAATGGCGGATTATGACTTTAGCAAAAGCTGAAAAACCG
CAACTATGATTCCAATAGAGCACCTGATATGAATATTGATGGTCTGGTAG
AAGAGACTTCTCTACGTTGAAAATAGTCAGTCGTCTTGCTTTGGCTCAAC
CACGGTTTCGTAGAATGATTGACCCTAAGTTTTTCATTTTGCTCGGAAGT
GGATATTGGGCTGAAGACTTGAATCAACGACAGGATATTTTCAACCTTCA
TTATCGTAGTTATTTGGAGGTTGGAATGCGTCAAAAGTCATGGAACAAAT
GGATGTGATGGTTTCACGGAAGCTAGCTTGGGCTAAATTATTGACCTATG
ATTTTTTGAGGAAGTCATAAATGTATCCTGTAATATCAAAAAGTTTGATC
TAGCGAAAATTCATGAAACTAGTATAAACAAGCGATACTTTTATGGACCT
ACCTGGTTATCAAACTAATCAGTGAACATTGAAACACATAAGACATAACT
GGTCAAAATACAAAAAAAAAT Coding sequence (CDS) from alignment at sc0000103:120002..125222- >TCONS_00010194 ID=TCONS_00010194|Name=TCONS_00010194|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at sc0000103:120002..125222- (Clytia hemisphaerica)
GATGAGGAGTTTGACGGCGTTGGATCGTTCTTACAAGGAACAATGGGACG
ATTAAAAGCGTTGACGAAAAAAGGTTATCATAAGAACTTGATGTATGTCA
TCCTCTTCTGCTTTGTCGTCCTTTTTGTCACATGGTTCATCGTCCGATTC
CGATAGTTAACCATTGACATTGGGAATGAAGTGAGACATCAAAACAAGAT
GCTAAATGAGATGGTTATGGCCAACCCTCAGGTTATCAAAACAATTATCA
AATGGTCGAGGAAGAAAATGACAATATGACTGAAAATCTCTTCGGAAAAG
TCAAAGAACTCAAAGATATGAGAAGAGCAGGGAGATGAGGAGTTTGACGG
CGTTGGATCGTTCTTACAAGGAACAATGGGACGATTAAAAGCGTTGACGA
AAAAAGGTTATCATAAGAACTTGATGTATGTCATCCTCTTCTGCTTTGTC
GTCCTTTTTGTCACATGGTTCATCGTCCGATTCCGATAGTTAACCATTGA
CATTGGGAATGAAGTGAGACATCAAAACAAGATGCTAAATGAGATGGTTA
TGGCCAACCCTCAGGTTATCAAAACAATTATCAAATGGTCGAGGAAGAAA
ATGACAATATGACTGAAAATCTCTTCGGAAAAGTCAAAGAACTCAAAGAT
ATGAGAAGAGCAGGGAGATGAGGAGTTTGACGGCGTTGGATCGTTCTTAC
AAGGAACAATGGGACGATTAAAAGCGTTGACGAAAAAAGGTTATCATAAG
AACTTGATGTATGTCATCCTCTTCTGCTTTGTCGTCCTTTTTGTCACATG
GTTCATCGTCCGATTCCGATAGTTAACCATTGACATTGGGAATGAAGTGA
GACATCAAAACAAGATGCTAAATGAGATGGTTATGGCCAACCCTCAGGTT
ATCAAAACAATTATCAAATGGTCGAGGAAGAAAATGACAATATGACTGAA
AATCTCTTCGGAAAAGTCAAAGAACTCAAAGATATGAGAAGAGCAGGGAG
ATGAGGAGTTTGACGGCGTTGGATCGTTCTTACAAGGAACAATGGGACGA
TTAAAAGCGTTGACGAAAAAAGGTTATCATAAGAACTTGATGTATGTCAT
CCTCTTCTGCTTTGTCGTCCTTTTTGTCACATGGTTCATCGTCCGATTCC
GATAGTTAACCATTGACATTGGGAATGAAGTGAGACATCAAAACAAGATG
CTAAATGAGATGGTTATGGCCAACCCTCAGGTTATCAAAACAATTATCAA
ATGGTCGAGGAAGAAAATGACAATATGACTGAAAATCTCTTCGGAAAAGT
CAAAGAACTCAAAGATATGAGAAGAGCAGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00010194-exon-sc0000103-1575043694:124969..125222 | TCONS_00010194-exon-sc0000103-1575043694:124969..125222 | Clytia hemisphaerica | exon |
| TCONS_00010194-exon-sc0000103-1575043694:124520..124623 | TCONS_00010194-exon-sc0000103-1575043694:124520..124623 | Clytia hemisphaerica | exon |
| TCONS_00010194-exon-sc0000103-1575043694:123832..123888 | TCONS_00010194-exon-sc0000103-1575043694:123832..123888 | Clytia hemisphaerica | exon |
| TCONS_00010194-exon-sc0000103-1575043694:120002..120867 | TCONS_00010194-exon-sc0000103-1575043694:120002..120867 | Clytia hemisphaerica | exon |
| TCONS_00010194-exon-sc0000103-1510915933:124969..125222 | TCONS_00010194-exon-sc0000103-1510915933:124969..125222 | Clytia hemisphaerica | exon |
| TCONS_00010194-exon-sc0000103-1510915933:124520..124623 | TCONS_00010194-exon-sc0000103-1510915933:124520..124623 | Clytia hemisphaerica | exon |
| TCONS_00010194-exon-sc0000103-1510915933:123832..123888 | TCONS_00010194-exon-sc0000103-1510915933:123832..123888 | Clytia hemisphaerica | exon |
| TCONS_00010194-exon-sc0000103-1510915933:120002..120867 | TCONS_00010194-exon-sc0000103-1510915933:120002..120867 | Clytia hemisphaerica | exon |
| TCONS_00010194-exon-sc0000103-1491911889:124969..125222 | TCONS_00010194-exon-sc0000103-1491911889:124969..125222 | Clytia hemisphaerica | exon |
| TCONS_00010194-exon-sc0000103-1491911889:124520..124623 | TCONS_00010194-exon-sc0000103-1491911889:124520..124623 | Clytia hemisphaerica | exon |
| TCONS_00010194-exon-sc0000103-1491911889:123832..123888 | TCONS_00010194-exon-sc0000103-1491911889:123832..123888 | Clytia hemisphaerica | exon |
| TCONS_00010194-exon-sc0000103-1491911889:120002..120867 | TCONS_00010194-exon-sc0000103-1491911889:120002..120867 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000103 | supercontig | sc0000103:120002..125222 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000727 | T_SNARE_dom |
Blast
BLAST of TCONS_00010194 vs. Swiss-Prot (Human)
Match: BET1 (BET1 homolog OS=Homo sapiens GN=BET1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.994e-20 Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 2
Query: 239 MRRAG-SYGQPSG------YQNN-YQMVEEENDNMTENLFGKVKELKDLTIDIGNEVRHQNKMLNEMDEEFDGVGSFLQGTMGRLKALTKKGYHKNLMYVILFCFVVL 538
MRRAG G P G Y N+ Y EEEN+ +TE+L KV +K L+I+IG+EV+ QNK+L EMD +FD FL TMG+LK L++ K L Y++LF V
Sbjct: 1 MRRAGLGEGVPPGNYGNYGYANSGYSACEEENERLTESLRSKVTAIKSLSIEIGHEVKTQNKLLAEMDSQFDSTTGFLGKTMGKLKILSRGSQTKLLCYMMLFSLFVF 108
The following BLAST results are available for this feature:
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