|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010168 ID=TCONS_00010168|Name=TCONS_00010168|organism=Clytia hemisphaerica|type=transcript|length=1420bp
AAATTTTTGAGTTGAGTGTTAGATTTCAACCGTAATTTGATTGGATTTGA
TCTCGATTGTAGTTGATCACGTAATACAAGGCTACATATGATTAAAAATG
ACACACATAGACAGCGTGTTGGTCAGTGACGTCGAAAAAGCTTTCGGGTT
GAACAAGAGAGATGTCAAATTAGTAGGTTCACCCGAATGTGCACCGCTAT
TGAAACAGAACGGGTGGTGCTGTGTGGAAAACGCTTTCGCTAAATTACAC
CGATTCGAAGTAATAAGACACACCTCTCTTACAAATACCGCTCAGCTGGT
TGTTTGGTTCGGAAATCCTATCTTCGAATTCCCTGAAGGTGGCAAAATAT
ACAAAGAGAAAGTGTTATTTGGGTTGTTTCGCTTATATAATTTACACGTG
GAGTACCGCGTTGTGGGGTGGATAGACGAGTATAGACGGCTAGTTCAACC
GGTATTTCCATGGCATTCGGCAGACAAAAAAGTCGATCATGTCACAGATT
TAGCGTTGTCCACTCTTTGTGACGACAAACTGAATGAGGATGAAGTCGTT
GCATGGTATTTAGAAGGCCCAACCTCGGAGGAATATATCTCACATAAAGA
CAATCTAGGGAAGTTTCTGGCAACTTTTAAAAGTATTGACATGAAAAATG
ATATAAGATTTTGGACACCTCGCTGGTTGAAAAACAGGGCCAAAGAGGTA
AACCAAAAGAAAGGACCTTTTCAACCAACGTAAAACTTGTTTTGGTGGAG
TAATCACGTTCAATTACTAAAACCTTGTTTTGTACATAAATTCTTCATTT
CTGTATCATATTTATAGAATAATTCAGTATTATTTTCCTTATAAACGAAT
AGTTTGTTCcaattattttcaacatttgacaCAAATAGTGCGATAAAATC
TATTTCAACccagtgaagccacttatttcccatcctaaACGCGTGACCCG
CGCGCGGTTTTCGCACAAACGCTAGATTGGAAGTAAAACATATCGCcagg
atttcgaaaaatatgccgcatgaaaacaaagaaagtgctagGTTCAGTCT
GTCATTCTAAATGCGGCAGAAATCTTAAGTCCTTAAGATTTCACTTTTTC
TCGCTTGAAAAAGGTTGAATATTAATCTCTAGTCtctttcgggctttaaa
ctcaaagcTTTGCACtctgtttttattcaaaagatcagaaaaaaactaat
gtaGTGTCATGGTGAATTTATGATCTACCATTTTATAACTATTGCTATAG
TAACCAACTCTATAGCCATCTTATTCAGCATTTAATTATATGATTCTTAG
TGAATGATTCTAAACACTTCTATGTTTGGGCTGGCAGAGTGAAGAGCTTG
CAAAGCTTAACGATCGTATCGAGGAAGAATGTAGACGTATTGGTTTTGTA
CGGGAACGAGGAACGTTGNN Run BLAST on NCBI protein sequence of TCONS_00010168-protein >TCONS_00010168-protein ID=TCONS_00010168-protein|Name=TCONS_00010168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MTHIDSVLVSDVEKAFGLNKRDVKLVGSPECAPLLKQNGWCCVENAFAKL
HRFEVIRHTSLTNTAQLVVWFGNPIFEFPEGGKIYKEKVLFGLFRLYNLH
VEYRVVGWIDEYRRLVQPVFPWHSADKKVDHVTDLALSTLCDDKLNEDEV
VAWYLEGPTSEEYISHKDNLGKFLATFKSIDMKNDIRFWTPRWLKNRAKE
VNQKKGPFQPT Run BLAST on NCBI transcript from alignment at sc0000103:179762..182123+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010168 ID=TCONS_00010168|Name=TCONS_00010168|organism=Clytia hemisphaerica|type=transcript|length=2362bp|location=Sequence derived from alignment at sc0000103:179762..182123+ (Clytia hemisphaerica)
AAATTTTTGAGTTGAGTGTTAGATTTCAACCGTAATTTGATTGGATTTGA
TCTCGATTGTAGTTGATCACGTAATACAAGGCTACATATGGTAAGGTTTT
GTCTGACCAGAGTTTTTTCCAGATAAATCAAAATAGTGTTAGTATACTTA
GATGAAGGAGGTCGAAAtataaaaattgatatgaaGAATAACCATTTGAA
CGTACATAAATGATTCAAAACATTCTCATCTGAAGTATGACAATTCAAGA
ATATACTTCAGTGTTTCTTCTAGCTAAATAGATTGGAATTTAAATGACAA
AAAACCGCATGATAAGTTTTATGAAGGACTATATGTTACTCGATCTCAGG
TCATCTCTCGATGAAAGCGTGTACACAACAGATTTGTAGTGCTGTTTTAG
AAGTCATAAGTACACCTccctctcacagacccggtaggattttttcagcc
agtggaaATAAGAATAACGGACTGAAATCTCGATTGGGATTGATGTTCCC
ATATTTCTTATGgctttcaattcttttgttttcaagccagaaaattcagt
gaggatggGAAAAGTAGCATCAtatttttgcagtgaggattggtttattt
gattaatCTCAGTGGGGcagaaaaattggaggataattttccaccgggga
caatattttggacaatttttccagtgggcctgtgagaagggggtgtactt
ATGACTTCtacgtactctcgggtacctaatagccgggggggtttggaata
aggggggggggggaggggttggaaaaaatctcaaaacttaataagcgggg
gggggggttggaataaaaatgtcatgggtggaaattttttgaaaaggagg
ctaatacagcagaatcgggacaaaaaagggaaccttcaaaaaacattttc
cctaaaattaataagccgggggggggggttggaataagaatgtcctgggt
ggaaaattaattagcgggggggggggagggcggctattaggtacccgaga
ataCTGAtgcaatttcattattttactcATAGATTAAAAATGACACACAT
AGACAGCGTGTTGGTCAGTGACGTCGAAAAAGCTTTCGGGTTGAACAAGA
GAGATGTCAAATTAGTAGGTTCACCCGAATGTGCACCGCTATTGAAACAG
AACGGGTGGTGCTGTGTGGAAAACGCTTTCGCTAAATTACACCGATTCGA
AGTAATAAGACACACCTCTCTTACAAATACCGCTCAGCTGGTTGTTTGGT
TCGGAAATCCTATCTTCGAATTCCCTGAAGGTGGCAAAATATACAAAGAG
AAAGTGTTATTTGGGTTGTTTCGCTTATATAATTTACACGTGGAGTACCG
CGTTGTGGGGTGGATAGACGAGTATAGACGGCTAGTTCAACCGGTATTTC
CATGGCATTCGGCAGACAAAAAAGTCGATCATGTCACAGATTTAGCGTTG
TCCACTCTTTGTGACGACAAACTGAATGAGGATGAAGTCGTTGCATGGTA
TTTAGAAGGCCCAACCTCGGAGGAATATATCTCACATAAAGACAATCTAG
GGAAGTTTCTGGCAACTTTTAAAAGTATTGACATGAAAAATGATATAAGA
TTTTGGACACCTCGCTGGTTGAAAAACAGGGCCAAAGAGGTAAACCAAAA
GAAAGGACCTTTTCAACCAACGTAAAACTTGTTTTGGTGGAGTAATCACG
TTCAATTACTAAAACCTTGTTTTGTACATAAATTCTTCATTTCTGTATCA
TATTTATAGAATAATTCAGTATTATTTTCCTTATAAACGAATAGTTTGTT
CcaattattttcaacatttgacaCAAATAGTGCGATAAAATCTATTTCAA
CccagtgaagccacttatttcccatcctaaACGCGTGACCCGCGCGCGGT
TTTCGCACAAACGCTAGATTGGAAGTAAAACATATCGCcaggatttcgaa
aaatatgccgcatgaaaacaaagaaagtgctagGTTCAGTCTGTCATTCT
AAATGCGGCAGAAATCTTAAGTCCTTAAGATTTCACTTTTTCTCGCTTGA
AAAAGGTTGAATATTAATCTCTAGTCtctttcgggctttaaactcaaagc
TTTGCACtctgtttttattcaaaagatcagaaaaaaactaatgtaGTGTC
ATGGTGAATTTATGATCTACCATTTTATAACTATTGCTATAGTAACCAAC
TCTATAGCCATCTTATTCAGCATTTAATTATATGATTCTTAGTGAATGAT
TCTAAACACTTCTATGTTTGGGCTGGCAGAGTGAAGAGCTTGCAAAGCTT
AACGATCGTATCGAGGAAGAATGTAGACGTATTGGTTTTGTACGGGAACG
AGGAACGTTGNN Coding sequence (CDS) from alignment at sc0000103:179762..182123+ >TCONS_00010168 ID=TCONS_00010168|Name=TCONS_00010168|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000103:179762..182123+ (Clytia hemisphaerica)
ATGACACACATAGACAGCGTGTTGGTCAGTGACGTCGAAAAAGCTTTCGG
GTTGAACAAGAGAGATGTCAAATTAGTAGGTTCACCCGAATGTGCACCGC
TATTGAAACAGAACGGGTGGTGCTGTGTGGAAAACGCTTTCGCTAAATTA
CACCGATTCGAAGTAATAAGACACACCTCTCTTACAAATACCGCTCAGCT
GGTTGTTTGGTTCGGAAATCCTATCTTCGAATTCCCTGAAGGTGGCAAAA
TATACAAAGAGAAAGTGTTATTTGGGTTGTTTCGCTTATATAATTTACAC
GTGGAGTACCGCGTTGTGGGGTGGATAGACGAGTATAGACGGCTAGTTCA
ACCGGTATTTCCATGGCATTCGGCAGACAAAAAAGTCGATCATGTCACAG
ATTTAGCGTTGTCCACTCTTTGTGACGACAAACTGAATGAGGATGAAGTC
GTTGCATGGTATTTAGAAGGCCCAACCTCGGAGGAATATATCTCACATAA
AGACAATCTAGGGAAGTTTCTGGCAACTTTTAAAAGTATTGACATGAAAA
ATGATATAAGATTTTGGACACCTCGCTGGTTGAAAAACAGGGCCAAAGAG
GTAAACCAAAAGAAAGGACCTTTTCAACCAACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010168-exon-sc0000103-1491911889:179762..179851 | TCONS_00010168-exon-sc0000103-1491911889:179762..179851 | Clytia hemisphaerica | exon |
| TCONS_00010168-exon-sc0000103-1510915933:179762..179851 | TCONS_00010168-exon-sc0000103-1510915933:179762..179851 | Clytia hemisphaerica | exon |
| TCONS_00010168-exon-sc0000103-1575043694:179762..179851 | TCONS_00010168-exon-sc0000103-1575043694:179762..179851 | Clytia hemisphaerica | exon |
| TCONS_00010168-exon-sc0000103-1491911889:180794..182123 | TCONS_00010168-exon-sc0000103-1491911889:180794..182123 | Clytia hemisphaerica | exon |
| TCONS_00010168-exon-sc0000103-1510915933:180794..182123 | TCONS_00010168-exon-sc0000103-1510915933:180794..182123 | Clytia hemisphaerica | exon |
| TCONS_00010168-exon-sc0000103-1575043694:180794..182123 | TCONS_00010168-exon-sc0000103-1575043694:180794..182123 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:179762..182123 + |
Blast
The following BLAST results are available for this feature:
|
