TCONS_00010040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010040
Unique NameTCONS_00010040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010040 ID=TCONS_00010040|Name=TCONS_00010040|organism=Clytia hemisphaerica|type=transcript|length=2481bp
taataagcaaaaaacgtcaaaGAAGATATTTTTCTGCATCAAAGTGTTGG
AGTCCCGAAACTTACAAATACtctcgaaaaattaatttaacaGAGGCTTC
AACCACGACTGGAGTGGAATTTTCTGTGAAGGTTTTCTTAGAAGTTGTGA
CTCATTCACCAAGACAATCTAGTGTGCGAATAAAGAGATTTTTAAACAGA
AGTTACGTTATGTGGGCGATAGGATCTTCCTTTTGTTGAAAGTGggaata
acaaaaaaaaaaaagaacaaacgtGAAAAGAACGTATTACAAAAAGTAAC
GACTATCATATGCAACATCCATTAGCAAAAGGAGCAAAATACAACGAGGG
GAGATCATACCAAAGCAGcattttttgagggaagaaatACCACACGAAGG
AACCAAATTTACGTGAAGTAAAAAATCTAAACTGCTCAATCAACGCCTAT
CAGCAACCAAATCACGTGCTTTCAAAAACACTACACAGCGAACCAATCAG
CAAACAGCTTTTCTATCATGAACCAATCAGCGTCCACCATTTGTAACACG
ACAATCATTCACATTGGGAACCAGACCTCCATCAACGAAACATGCCATCA
ACCGCCCCTCCTCGACCACCCAAATGACGACCCTTTACCTTTCAACAAAG
ACTTACTGAGAGCGTTTCTTGTGGTCATTTACAGTTTCATTTTCTTGTTG
GGCGTCCCTGGCAACATCCTGGTCATACTCACTATCACTAGAGTCAAGAA
AATGTGCTCCGTTAAAAACCTCTTAATCGCTAACATCGCTATCGGTGATT
TAATCTCCATCCTATGGTGTTTGACCACAACCTTATTGGGACTTTTCATT
GACTGGCCGTACGGCCTAAACATTTGTAAATACCTCAACACGttaagtga
cgtcatcataGGGAATACAGTCTTCACCATGGTATTGATAACCTTTGAAC
GTTATCGCGCAATCATCTCTCCATTTTCCTCAAAACCGACCTTACGTCGA
ACCGTGCTGGCGCTTACGTTTTTCTGGATTGTCTCTTACACGTTAATTGG
CATCCCGTTAATCAAAGCAACGCGTATCACGTACGGGGGGTTTTGGGTCC
GTAAAATGTGCTCCTTGATATGGCCGTCGCGCGCTTTTGAGATCACTTAC
CGCATGGGtactttcattttcgttttcctTGGGCCGTTTTTCatcgtttt
gttttgtttcttgcGAATCAAGTTGAAGTTGGAAGAAAATATCCGGTTCG
CGTCGACTTCATTACGCGGACGCTCGACCATTAAGCGGGCGAAGAAAAAT
CAACGCTTGATCAAAATGTTGTTGgtgatttttgtttgtttcaccGCTTG
CTTCTTACCTGTGAATATACTCCTCCTCGCCTTCACATTCTTCAAGCGCG
AGCTGTTCGCGTGGAAATACTTGATTGTCTTCCTTCAGATGGTGATTGCT
GTGCTGTTCCTCAACTCAACGATGAATCCGATCATCTTATATCTATTGAG
TCGTGATTTCCGTATGGGCTACATCCAGCAAATTAAATGTCTGTGCCCAT
CGAACGCCAAACTGCAAAGAGCGGTCCGAGGTATCAAACGTATCTCAACT
TACTCCTTCCGCTTATCCGGAAAACGTAACAAAAGCGGCCGTGCCCGTGA
TTCATCCTCACCGGATGATTTTGATGAAAGTTCATCTTCAGAAACAGAAA
AGACTGAAAACGATTTGTTGCCATGTCTACAGACTTCTGATTGGTTGATG
AAAAGTGATGAGTCATCACCGCCAAGAAATGGCGCGCTTTTTGTGATGAA
TAAAATGCAGAACACgaacaacaataacaataacaatGAAAACAAACCGA
AGAAAGTGTCATGGTCACATTATACCAGTAGTCTGGAGTAAGCTttactg
aaaacaaaaaataatatcataaaatttgaatataaatatTGGTTTTAGCC
GTCAATTTTCGTTCGAAGAGGATTTTTCatatgcgagttacgagttacaa
gttacgagttacgagttgcatttagaaccacgagttgcgagttacttttt
acgagttacgagttacgagttgcattttaacaaaataaaatcgcgagttg
cgagttacgagttgcatttagaaccacgagttgcgagttactttttacga
gttacgagttacgagttgcattttaacaaaataaaatcgcgagttgcgag
ttacgagttgcatctTAACACACCaaattcgcgagttgcaaattaaaagt
gcgagttgcatatTAAAAGTGCGAGCTGCAAATTTAAAGTGCGAGCTGCA
AATTAAAAGTTAAAGTTGCAAATTGAAATCAAATCTGAGATTGTTATCTT
AAATAATAACAGCACAAAAAAAAGCTAAACCCAAAGCAAAACATGGAAAA
CTCAGCCAAACTGTTTACGTTTTGTGACTAAAGTTGTGAAACCACTCAAA
TCACACATTTTTTCgctcatttttgtataaa
Run BLAST on NCBI

protein sequence of TCONS_00010040-protein

>TCONS_00010040-protein ID=TCONS_00010040-protein|Name=TCONS_00010040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MNQSASTICNTTIIHIGNQTSINETCHQPPLLDHPNDDPLPFNKDLLRAF
LVVIYSFIFLLGVPGNILVILTITRVKKMCSVKNLLIANIAIGDLISILW
CLTTTLLGLFIDWPYGLNICKYLNTLSDVIIGNTVFTMVLITFERYRAII
SPFSSKPTLRRTVLALTFFWIVSYTLIGIPLIKATRITYGGFWVRKMCSL
IWPSRAFEITYRMGTFIFVFLGPFFIVLFCFLRIKLKLEENIRFASTSLR
GRSTIKRAKKNQRLIKMLLVIFVCFTACFLPVNILLLAFTFFKRELFAWK
YLIVFLQMVIAVLFLNSTMNPIILYLLSRDFRMGYIQQIKCLCPSNAKLQ
RAVRGIKRISTYSFRLSGKRNKSGRARDSSSPDDFDESSSSETEKTENDL
LPCLQTSDWLMKSDESSPPRNGALFVMNKMQNTNNNNNNNENKPKKVSWS
HYTSSLE
Run BLAST on NCBI

transcript from alignment at sc0000101:38526..41006

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010040 ID=TCONS_00010040|Name=TCONS_00010040|organism=Clytia hemisphaerica|type=transcript|length=2481bp|location=Sequence derived from alignment at sc0000101:38526..41006 (Clytia hemisphaerica)
tttatacaaaaatgagcGAAAAAATGTGTGATTTGAGTGGTTTCACAACT
TTAGTCACAAAACGTAAACAGTTTGGCTGAGTTTTCCATGTTTTGCTTTG
GGTTTAGCTTTTTTTTGTGCTGTTATTATTTAAGATAACAATCTCAGATT
TGATTTCAATTTGCAACTTTAACTTTTAATTTGCAGCTCGCACTTTAAAT
TTGCAGCTCGCACTTTTAatatgcaactcgcacttttaatttgcaactcg
cgaatttGGTGTGTTAagatgcaactcgtaactcgcaactcgcgatttta
ttttgttaaaatgcaactcgtaactcgtaactcgtaaaaagtaactcgca
actcgtggttctaaatgcaactcgtaactcgcaactcgcgattttatttt
gttaaaatgcaactcgtaactcgtaactcgtaaaaagtaactcgcaactc
gtggttctaaatgcaactcgtaactcgtaacttgtaactcgtaactcgca
tatGAAAAATCCTCTTCGAACGAAAATTGACGGCTAAAACCAatatttat
attcaaattttatgatattattttttgttttcagtaaAGCTTACTCCAGA
CTACTGGTATAATGTGACCATGACACTTTCTTCGGTTTGTTTTCattgtt
attgttattgttgttcGTGTTCTGCATTTTATTCATCACAAAAAGCGCGC
CATTTCTTGGCGGTGATGACTCATCACTTTTCATCAACCAATCAGAAGTC
TGTAGACATGGCAACAAATCGTTTTCAGTCTTTTCTGTTTCTGAAGATGA
ACTTTCATCAAAATCATCCGGTGAGGATGAATCACGGGCACGGCCGCTTT
TGTTACGTTTTCCGGATAAGCGGAAGGAGTAAGTTGAGATACGTTTGATA
CCTCGGACCGCTCTTTGCAGTTTGGCGTTCGATGGGCACAGACATTTAAT
TTGCTGGATGTAGCCCATACGGAAATCACGACTCAATAGATATAAGATGA
TCGGATTCATCGTTGAGTTGAGGAACAGCACAGCAATCACCATCTGAAGG
AAGACAATCAAGTATTTCCACGCGAACAGCTCGCGCTTGAAGAATGTGAA
GGCGAGGAGGAGTATATTCACAGGTAAGAAGCAAGCggtgaaacaaacaa
aaatcacCAACAACATTTTGATCAAGCGTTGATTTTTCTTCGCCCGCTTA
ATGGTCGAGCGTCCGCGTAATGAAGTCGACGCGAACCGGATATTTTCTTC
CAACTTCAACTTGATTCgcaagaaacaaaacaaaacgatGAAAAACGGCC
CAaggaaaacgaaaatgaaagtaCCCATGCGGTAAGTGATCTCAAAAGCG
CGCGACGGCCATATCAAGGAGCACATTTTACGGACCCAAAACCCCCCGTA
CGTGATACGCGTTGCTTTGATTAACGGGATGCCAATTAACGTGTAAGAGA
CAATCCAGAAAAACGTAAGCGCCAGCACGGTTCGACGTAAGGTCGGTTTT
GAGGAAAATGGAGAGATGATTGCGCGATAACGTTCAAAGGTTATCAATAC
CATGGTGAAGACTGTATTCCCtatgatgacgtcacttaaCGTGTTGAGGT
ATTTACAAATGTTTAGGCCGTACGGCCAGTCAATGAAAAGTCCCAATAAG
GTTGTGGTCAAACACCATAGGATGGAGATTAAATCACCGATAGCGATGTT
AGCGATTAAGAGGTTTTTAACGGAGCACATTTTCTTGACTCTAGTGATAG
TGAGTATGACCAGGATGTTGCCAGGGACGCCCAACAAGAAAATGAAACTG
TAAATGACCACAAGAAACGCTCTCAGTAAGTCTTTGTTGAAAGGTAAAGG
GTCGTCATTTGGGTGGTCGAGGAGGGGCGGTTGATGGCATGTTTCGTTGA
TGGAGGTCTGGTTCCCAATGTGAATGATTGTCGTGTTACAAATGGTGGAC
GCTGATTGGTTCATGATAGAAAAGCTGTTTGCTGATTGGTTCGCTGTGTA
GTGTTTTTGAAAGCACGTGATTTGGTTGCTGATAGGCGTTGATTGAGCAG
TTTAGATTTTTTACTTCACGTAAATTTGGTTCCTTCGTGTGGTatttctt
ccctcaaaaaatgCTGCTTTGGTATGATCTCCCCTCGTTGTATTTTGCTC
CTTTTGCTAATGGATGTTGCATATGATAGTCGTTACTTTTTGTAATACGT
TCTTTTCacgtttgttcttttttttttttgttattccCACTTTCAACAAA
AGGAAGATCCTATCGCCCACATAACGTAACTTCTGTTTAAAAATCTCTTT
ATTCGCACACTAGATTGTCTTGGTGAATGAGTCACAACTTCTAAGAAAAC
CTTCACAGAAAATTCCACTCCAGTCGTGGTTGAAGCCTCtgttaaattaa
tttttcgagaGTATTTGTAAGTTTCGGGACTCCAACACTTTGATGCAGAA
AAATATCTTCtttgacgttttttgcttatta

Coding sequence (CDS) from alignment at sc0000101:38526..41006

>TCONS_00010040 ID=TCONS_00010040|Name=TCONS_00010040|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at sc0000101:38526..41006 (Clytia hemisphaerica)
TTACTCCAGACTACTGGTATAATGTGACCATGACACTTTCTTCGGTTTGT
TTTCattgttattgttattgttgttcGTGTTCTGCATTTTATTCATCACA
AAAAGCGCGCCATTTCTTGGCGGTGATGACTCATCACTTTTCATCAACCA
ATCAGAAGTCTGTAGACATGGCAACAAATCGTTTTCAGTCTTTTCTGTTT
CTGAAGATGAACTTTCATCAAAATCATCCGGTGAGGATGAATCACGGGCA
CGGCCGCTTTTGTTACGTTTTCCGGATAAGCGGAAGGAGTAAGTTGAGAT
ACGTTTGATACCTCGGACCGCTCTTTGCAGTTTGGCGTTCGATGGGCACA
GACATTTAATTTGCTGGATGTAGCCCATACGGAAATCACGACTCAATAGA
TATAAGATGATCGGATTCATCGTTGAGTTGAGGAACAGCACAGCAATCAC
CATCTGAAGGAAGACAATCAAGTATTTCCACGCGAACAGCTCGCGCTTGA
AGAATGTGAAGGCGAGGAGGAGTATATTCACAGGTAAGAAGCAAGCggtg
aaacaaacaaaaatcacCAACAACATTTTGATCAAGCGTTGATTTTTCTT
CGCCCGCTTAATGGTCGAGCGTCCGCGTAATGAAGTCGACGCGAACCGGA
TATTTTCTTCCAACTTCAACTTGATTCgcaagaaacaaaacaaaacgatG
AAAAACGGCCCAaggaaaacgaaaatgaaagtaCCCATGCGGTAAGTGAT
CTCAAAAGCGCGCGACGGCCATATCAAGGAGCACATTTTACGGACCCAAA
ACCCCCCGTACGTGATACGCGTTGCTTTGATTAACGGGATGCCAATTAAC
GTGTAAGAGACAATCCAGAAAAACGTAAGCGCCAGCACGGTTCGACGTAA
GGTCGGTTTTGAGGAAAATGGAGAGATGATTGCGCGATAACGTTCAAAGG
TTATCAATACCATGGTGAAGACTGTATTCCCtatgatgacgtcacttaaC
GTGTTGAGGTATTTACAAATGTTTAGGCCGTACGGCCAGTCAATGAAAAG
TCCCAATAAGGTTGTGGTCAAACACCATAGGATGGAGATTAAATCACCGA
TAGCGATGTTAGCGATTAAGAGGTTTTTAACGGAGCACATTTTCTTGACT
CTAGTGATAGTGAGTATGACCAGGATGTTGCCAGGGACGCCCAACAAGAA
AATGAAACTGTAAATGACCACAAGAAACGCTCTCAGTAAGTCTTTGTTGA
AAGGTAAAGGGTCGTCATTTGGGTGGTCGAGGAGGGGCGGTTGATGGCAT
GTTTCGTTGATGGAGGTCTGGTTCCCAATGTGAATGATTGTCGTGTTACA
AATGGTGGACGCTGATTGGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005628XLOC_005628Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010040-proteinTCONS_00010040-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010040-exon-sc0000101-1491911889:38526..41006TCONS_00010040-exon-sc0000101-1491911889:38526..41006Clytia hemisphaericaexon
TCONS_00010040-exon-sc0000101-1510915933:38526..41006TCONS_00010040-exon-sc0000101-1510915933:38526..41006Clytia hemisphaericaexon
TCONS_00010040-exon-sc0000101-1575043694:38526..41006TCONS_00010040-exon-sc0000101-1575043694:38526..41006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:38526..41006 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.351372	0.321152	0.267848	0.198668	0.722025	0.495951	5.3836	5.62784	4.27991	4.70006	2.74858	3.1799	1.32585	1.26227	0.317856	0.304862	0.50988	0.843941	2.00995	1.71076	1.24029	1.4749	1.02854	1.07539	1.0604	2.12503	0.89093	0.767569	0.522437	0.711233
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00010040 vs. Swiss-Prot (Human)
Match: NPFF2 (Neuropeptide FF receptor 2 OS=Homo sapiens GN=NPFFR2 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.449e-28
Identity = 96/384 (25.00%), Postives = 178/384 (46.35%), Query Frame = 2 
Query:  485 TANQSANSFSIMNQSASTICNTTIIHIGNQTSINETCHQXXXXXXXXXXXXXFNKDLLRAFLVVIYSFIFLLGVPGNILVILTITRVKKMCSVKNLLIANIAIGDLISILWCLTTTLLGLFI-DWPYGLNICKYLNTLSDVIIGNTVFTMVLITFERYRAIISPFSSKPTLRRTVLALTFFWIVSYTLIGIPLI-------KATRI-------TYGGFWVRKMCSLIWPSRAFEITYRMGTFIFVFLGPFFIVLFCFLRIKLKLEENIRFASTSLRGRSTIKR----AKKNQRLIKMLLVIFVCFTACFLPVNILLLAFTFFKRELFAWKYLIVFLQMVIAVL-FLNSTMNPIILYLLSRDFRMGYIQQIKC-LCPSNAKLQRA 1573
             A+++     IMN+   T  +     I N   +N+T H      +        ++  + A  ++ Y  IF L + GN +V   + R K M +V NL I N+AI DL+  ++C+  TLL   I  WP+G  +CK    +  + +  +VFT+V I  +R++ ++ PF  K T++   + +   W+++ T++    +       K  R+       T   +W    C   WP++     Y    F  ++L P  +++  + RI + L      A+    GR   ++    ++K Q++IKMLL++ + F   +LP+  L++   +        + + +++      L F NS++NPII    + +FR G+ +  +  LC   AK   A
Sbjct:   92 AADRARRERFIMNEKWDTNSSENWHPIWN---VNDTKHHLYSDINITYVNYYLHQPQVAAIFIISYFLIFFLCMMGNTVVCFIVMRNKHMHTVTNLFILNLAISDLLVGIFCMPITLLDNIIAGWPFGNTMCKISGLVQGISVAASVFTLVAIAVDRFQCVVYPFKPKLTIKTAFVIIMIIWVLAITIMSPSAVMLHVQEEKYYRVRLNSQNKTSPVYW----CREDWPNQEMRKIYTTVLFANIYLAPLSLIVIMYGRIGISLFR----AAVPHTGRKNQEQWHVVSRKKQKIIKMLLIVALLFILSWLPLWTLMMLSDYADLSPNELQIINIYIYPFAHWLAFGNSSVNPIIYGFFNENFRRGFQEAFQLQLCQKRAKPMEA 464
The following BLAST results are available for this feature:
BLAST of TCONS_00010040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPFF21.449e-2825.00Neuropeptide FF receptor 2 OS=Homo sapiens GN=NPFF... [more]
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