TCONS_00010040-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010040-protein
Unique Name	TCONS_00010040-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	457

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010040-protein ID=TCONS_00010040-protein|Name=TCONS_00010040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MNQSASTICNTTIIHIGNQTSINETCHQPPLLDHPNDDPLPFNKDLLRAF
LVVIYSFIFLLGVPGNILVILTITRVKKMCSVKNLLIANIAIGDLISILW
CLTTTLLGLFIDWPYGLNICKYLNTLSDVIIGNTVFTMVLITFERYRAII
SPFSSKPTLRRTVLALTFFWIVSYTLIGIPLIKATRITYGGFWVRKMCSL
IWPSRAFEITYRMGTFIFVFLGPFFIVLFCFLRIKLKLEENIRFASTSLR
GRSTIKRAKKNQRLIKMLLVIFVCFTACFLPVNILLLAFTFFKRELFAWK
YLIVFLQMVIAVLFLNSTMNPIILYLLSRDFRMGYIQQIKCLCPSNAKLQ
RAVRGIKRISTYSFRLSGKRNKSGRARDSSSPDDFDESSSSETEKTENDL
LPCLQTSDWLMKSDESSPPRNGALFVMNKMQNTNNNNNNNENKPKKVSWS
HYTSSLE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005628	XLOC_005628	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010040	TCONS_00010040	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 127..149 score: 22.51 coord: 306..332 score: 26.87 coord: 264..288 score: 25.39 coord: 50..74 score: 32.45 coord: 212..235 score: 20.92 coord: 161..182 score: 18.25 coord: 83..104 score: 24.82
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 65..323 e-value: 1.6E-32 score: 112.7
None	No IPR available	GENE3D	1.20.1070.10		coord: 16..397 e-value: 1.2E-59 score: 201.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 369..398
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 430..457
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 18..347
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 65..324 score: 35.678

Blast

[Close]

BLAST of TCONS_00010040-protein vs. Swiss-Prot (Human)
Match: NPFF2 (Neuropeptide FF receptor 2 OS=Homo sapiens GN=NPFFR2 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 6.973e-29
Identity = 91/356 (25.56%), Postives = 166/356 (46.63%), Query Frame = 0

Query:   18 NQTSINETCHQPPLLDHPNDDPLPFNKDLLRAFLVVIYSFIFLLGVPGNILVILTITRVKKMCSVKNLLIANIAIGDLISILWCLTTTLL-GLFIDWPYGLNICKYLNTLSDVIIGNTVFTMVLITFERYRAIISPFSSKPTLRRTVLALTFFWIVSYTLIGIPLI-------KATRI-------TYGGFWVRKMCSLIWPSRAFEITYRMGTFIFVFLGPFFIVLFCFLRIKLKLEENIRFASTSLRGRSTIKR----AKKNQRLIKMLLVIFVCFTACFLPVNILLLAFTFFKRELFAWKYLIVFLQMVIAVL-FLNSTMNPIILYLLSRDFRMGYIQQIKC-LCPSNAKLQRA 352
            N T +N   HQP +                 A  ++ Y  IF L + GN +V   + R K M +V NL I N+AI DL+  ++C+  TLL  +   WP+G  +CK    +  + +  +VFT+V I  +R++ ++ PF  K T++   + +   W+++ T++    +       K  R+       T   +W R+     WP++     Y    F  ++L P  +++  + RI + L      A+    GR   ++    ++K Q++IKMLL++ + F   +LP+  L++   +        + + +++      L F NS++NPII    + +FR G+ +  +  LC   AK   A
Sbjct:  133 NITYVNYYLHQPQVA----------------AIFIISYFLIFFLCMMGNTVVCFIVMRNKHMHTVTNLFILNLAISDLLVGIFCMPITLLDNIIAGWPFGNTMCKISGLVQGISVAASVFTLVAIAVDRFQCVVYPFKPKLTIKTAFVIIMIIWVLAITIMSPSAVMLHVQEEKYYRVRLNSQNKTSPVYWCRE----DWPNQEMRKIYTTVLFANIYLAPLSLIVIMYGRIGISLFR----AAVPHTGRKNQEQWHVVSRKKQKIIKMLLIVALLFILSWLPLWTLMMLSDYADLSPNELQIINIYIYPFAHWLAFGNSSVNPIIYGFFNENFRRGFQEAFQLQLCQKRAKPMEA 464

The following BLAST results are available for this feature:

BLAST of TCONS_00010040-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010040-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NPFF2	6.973e-29	25.56	Neuropeptide FF receptor 2 OS=Homo sapiens GN=NPFF...	[more]

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TCONS_00010040-protein (polypeptide) - C. hemisphaerica