TCONS_00009930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009930
Unique NameTCONS_00009930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009930 ID=TCONS_00009930|Name=TCONS_00009930|organism=Clytia hemisphaerica|type=transcript|length=1586bp
AAGAACTGGGCACACATTTATTTCATAGCTTCTATTTTCTGATGGACCAT
AGGAAATTTGGTAGTTTATTCTTATATATAATATGGTATTGTCCACATTA
CGTGGTGTTCTTACCAAACGTCCTTTACTGAGAAGCATCGTGACTGTAAC
TAGCTTATTCGCGGCTTCAGATCTTTGTTGTCAACTTTTTGAAAACCATG
GTAACATCAAATACAAATTTGACTGGGAAAGATTACGCAAAATGGCGACC
ATTGGATTGATATATTACGGACCAATGTATTATTACTATTACGGATTTTT
GGATCGTAAATTCCCTGGTAAAAATCCTAGAACTGTCCTTGTCAAAATTT
TGTTCGATCAGTTTATTTTTGCTGTACCGTCacagtttttcttttattgt
ataGCTGGTAAACTCGAGAGGAAGAACAACTCTGAGATAATCGAGGAAAT
TAAACTGAAGTATATACCAACCTATGTGACTTCTACTATATTCTGGCCTG
CTGCACAGCTTGTGAATTTTTCATTAGTGCCACCTACGCATCGTATTTTG
TTTGTGTCCAGTGCGAATTTTGTTTGGTTGAATATTTTATCTTATATTAA
GAACCGTCCAAATTTGCCAGCTGTTTTGGAAAGAGTTCAGAACTGGACTA
CGATGGATGTTAAGAAGGAGTTGGTTGTCGAGCACCTGGAAAGTGAGAAT
AACAATGATTTAGATCTAGAAGAAGATCCCGAAAgcgaaaagaagaaaac
agaataggatttttaatttttttttttatcaaacagccCTGTTTACTTTT
AAGGGAAACCCCGGATGATTCTGCATTTAGGAACTGGGTATGAGGTACAT
GCAAGCGTCAAAGTTACCTCATTATTCACTATAtctaattaaataaaaaa
tttgaagaaaaaaaatcataagaaaATCGAATACCCTAATCAAAATTTAC
CAGTGTTCTTGAAAGAGTGCAGAGCTGGAAATTGTTGGCCAGTAAGAATT
ATCTAAATGAAAATATCAGTGAAATATTGGTGGACCCTatgaaaaaggag
aaaatagaatagaatttattttatatttgaagCCTATTCTAACTAATTCT
ATTGGATAGCCAACAGGAGAGAATATTTAAGCAAAAATGTATAAGGTAAC
CTTTAACAAAATTCGAGCAAActctccataacttgaacatCGCTAGTCTC
AATCATAGACTTCTATATAGATATACACCATATATCtataagaaattatt
ttttgctgaAGGGTGAGCAGAAGCCTAAAACATCCCGCCCCTCGTCCCGC
CCCTTAGTGTTTGAGATTGGAGACTTAACTGTGCGCAAAATGTCATTCCA
ATCAATCGAGGCTCTAGACACCTTTACATCAAGTTTGTTTGAAAGAGGAA
gaattcgaaaattttcagTAGATGGGTTGAAATGAAAAAGCATACACGAA
TTAGGTCGGGTGATTTTGAATTACTCTATTAAAAAGTTTAAAGGTTGCGC
cgttcaattttaatttaaccCATTAttttatagaacaatttttaaagaaa
atcaaaatggtgaaTTTTATAATTTCATTTTATCAC
Run BLAST on NCBI

protein sequence of TCONS_00009930-protein

>TCONS_00009930-protein ID=TCONS_00009930-protein|Name=TCONS_00009930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MVLSTLRGVLTKRPLLRSIVTVTSLFAASDLCCQLFENHGNIKYKFDWER
LRKMATIGLIYYGPMYYYYYGFLDRKFPGKNPRTVLVKILFDQFIFAVPS
QFFFYCIAGKLERKNNSEIIEEIKLKYIPTYVTSTIFWPAAQLVNFSLVP
PTHRILFVSSANFVWLNILSYIKNRPNLPAVLERVQNWTTMDVKKELVVE
HLESENNNDLDLEEDPESEKKKTE
Run BLAST on NCBI

transcript from alignment at sc0000100:327364..330447-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009930 ID=TCONS_00009930|Name=TCONS_00009930|organism=Clytia hemisphaerica|type=transcript|length=3084bp|location=Sequence derived from alignment at sc0000100:327364..330447- (Clytia hemisphaerica)
AAGAACTGGGCACACATTTATTTCATAGCTTCTATTTTCTGATGGACCAT
AGGAAATTTGGTAGTTTATTCTTATGTAAGGAAATTCGAAATTCGTACAA
AGATTTAAGTGAGTGTGTAAGAAAATTGTGTAGATATTGGCTAAAGGACT
CCCAGAAACTAATTTTATGGGGGTGTTGGGGATTTCAATTTTAGGGCAAT
TCAGTCTCTCTAAGGCTCCCAGCGGCTTTTGTAAATGTGTGAATTGGAAA
ACTTTGCGTAAACAGAAACTGCGTGAATTTCGAAAAAAAATGCGCGAATG
TGTGAATTTGGAAGGAAAAATTGCGTGATTGCGTGGATTGAAGGTCCGTG
GGGATGCCTCTCTAAGGGTTGGTTTTTCACAAACTCAAGTCAAAGAAGAG
AGAAAAGTCAAGAAAATTTTTCGAAAGTTTTGGAGATTATTTTTTTGAAA
ATTTTTTGTGGAAATGTCTTTCTAAGGGTCACCTTTTCCGCAAAAATCAG
TCTCTCTCAGGGTCAGGGTTTGGAGGTCCGGCACGAAAACACCCAGCATC
CCTCAACCCTAATACCCCCGGATCTTCAACTTTACCTTTTAACGTTTAGC
AATCTTTTTCATAATATAGAATCTGATTCCCATCTTATAACTTCCACATC
TTAGGCAATGCGCCACTAAGGACAATGGCTTTCTTCTATATCTAAAAAGT
GTTTGTTCAGTATCAAATTTTTACAGGGTTTCGTATAACAAAACTTATAA
ACAATACAATATGAAATATGAAAATGTCAAAAAATCTAGCTGTGGTCTGT
TGTTTTGATTGGGAAAGCAGATACCTGATGTTACACATATCTTATCATCT
TTGACAGTGACACATTATAAGAAAACACTTCGAAAGTTAAGGGATAACTT
GACGAGACGAGATAAAGAGCAGTTTATTAGAGTGCTTACTCGAGGCTGCA
CCTGACTCCGTCTTCATCTTATTGCGTCTTTTTATTTATATATTTGTGCC
TTTGTTGAATGTTGCATTTTTATGTGTGCCTTATTCATTTGTTTTTGTGC
CTCCGTGCCTCTGTTCAAGTGTTTCTTTTATTCGTGTCTGAAGTGTANTT
TTGTGCCTCCGTGCCTCTGTTCAAGTGTTTGTTTTATTCGTGTCTGAAGT
GTATGGTCAAGCGAGATGAGTGAATTGATGATTTTATGTTTTTGAAGAAA
GGAATTACTTGTGACACCCCTTTCTCACAGACCCGGTAGGATTTTTTCAG
CCAGTGGGGAGTAAAAATAACGAACCAAAACTTGATGGAGATTGATATTT
CCATAATCTTTATGACTGGGGATTTGAGCTCCATTGTTTTCGAATCCAAA
AAGTTCAGTGGGGATGGAAAAAATGAAAAAATAGCACAATATATTTCAGT
GAGAATTTGCTTATCAAATTGTTTTCAGTGGGGGATAAAAATTTGAATAT
ATTTTTCCACTGGGGACGATATTTTTGCCAATTTTTTCAGTAGGAAGGGG
TTCTAGTGAGTCTGTGAGAAGGGGATGTCTTGTCTTTTGATGCAAATGCG
ATTTTTTCTACGACTTTCTTTAGATATAATATGGTATTGTCCACATTACG
TGGTGTTCTTACCAAACGTCCTTTACTGAGAAGCATCGTGACTGTAACTA
GCTTATTCGCGGCTTCAGATCTTTGTTGTCAACTTTTTGAAAACCATGGT
AACATCAAATACAAATTTGACTGGGAAAGATTACGCAAAATGGCGACCAT
TGGATTGATATATTACGGACCAATGTATTATTACTATTACGGATTTTTGG
ATCGTAAATTCCCTGGTAAAAATCCTAGAACTGTCCTTGTCAAAATTTTG
TTCGATCAGTTTATTTTTGCTGTACCGTCACAGTTTTTCTTTTATTGTAT
AGCTGGTAAACTCGAGAGGAAGAACAACTCTGAGATAATCGAGGAAATTA
AACTGAAGTATATACCAACCTATGTGACTTCTACTATATTCTGGCCTGCT
GCACAGCTTGTGAATTTTTCATTAGTGCCACCTACGCATCGTATTTTGTT
TGTGTCCAGTGCGAATTTTGTTTGGTTGAATATTTTATCTTATATTAAGA
ACCGTCCAAATTTGCCAGCTGTTTTGGAAAGAGTTCAGAACTGGACTACG
ATGGATGTTAAGAAGGAGTTGGTTGTCGAGCACCTGGAAAGTGAGAATAA
CAATGATTTAGATCTAGAAGAAGATCCCGAAAGCGAAAAGAAGAAAACAG
AATAGGATTTTTAATTTTTTTTTTTATCAAACAGCCCTGTTTACTTTTAA
GGGAAACCCCGGATGATTCTGCATTTAGGAACTGGGTATGAGGTACATGC
AAGCGTCAAAGTTACCTCATTATTCACTATATCTAATTAAATAAAAAATT
TGAAGAAAAAAAATCATAAGAAAATCGAATACCCTAATCAAAATTTACCA
GTGTTCTTGAAAGAGTGCAGAGCTGGAAATTGTTGGCCAGTAAGAATTAT
CTAAATGAAAATATCAGTGAAATATTGGTGGACCCTATGAAAAAGGAGAA
AATAGAATAGAATTTATTTTATATTTGAAGCCTATTCTAACTAATTCTAT
TGGATAGCCAACAGGAGAGAATATTTAAGCAAAAATGTATAAGGTAACCT
TTAACAAAATTCGAGCAAACTCTCCATAACTTGAACATCGCTAGTCTCAA
TCATAGACTTCTATATAGATATACACCATATATCTATAAGAAATTATTTT
TTGCTGAAGGGTGAGCAGAAGCCTAAAACATCCCGCCCCTCGTCCCGCCC
CTTAGTGTTTGAGATTGGAGACTTAACTGTGCGCAAAATGTCATTCCAAT
CAATCGAGGCTCTAGACACCTTTACATCAAGTTTGTTTGAAAGAGGAAGA
ATTCGAAAATTTTCAGTAGATGGGTTGAAATGAAAAAGCATACACGAATT
AGGTCGGGTGATTTTGAATTACTCTATTAAAAAGTTTAAAGGTTGCGCCG
TTCAATTTTAATTTAACCCATTATTTTATAGAACAATTTTTAAAGAAAAT
CAAAATGGTGAATTTTATAATTTCATTTTATCAC

Coding sequence (CDS) from alignment at sc0000100:327364..330447-

>TCONS_00009930 ID=TCONS_00009930|Name=TCONS_00009930|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at sc0000100:327364..330447- (Clytia hemisphaerica)
ATGGTATTGTCCACATTACGTGGTGTTCTTACCAAACGTCCTTTACTGAG
AAGCATCGTGACTGTAACTAGCTTATTCGCGGCTTCAGATCTTTGTTGTC
AACTTTTTGAAAACCATGGTAACATCAAATACAAATTTGACTGGGAAAGA
TTACGCAAAATGGCGACCATTGGATTGATATATTACGGACCAATGTATTA
TTACTATTACGGATTTTTGGATCGTAAATTCCCTGGTAAAAATCCTAGAA
CTGTCCTTGTCAAAATTTTGTTCGATCAGTTTATTTTTGCTGTACCGTCA
CAGTTTTTCTTTTATTGTATAGCTGGTAAACTCGAGAGGAAGAACAACTC
TGAGATAATCGAGGAAATTAAACTGAAGTATATACCAACCTATGTGACTT
CTACTATATTCTGGCCTGCTGCACAGCTTGTGAATTTTTCATTAGTGCCA
CCTACGCATCGTATTTTGTTTGTGTCCAGTGCGAATTTTGTTTGGTTGAA
TATTTTATCTTATATTAAGAACCGTCCAAATTTGCCAGCTGTTTTGGAAA
GAGTTCAGAACTGGACTACGATGGATGTTAAGAAGGAGTTGGTTGTCGAG
CACCTGGAAAGTGAGAATAACAATGATTTAGATCTAGAAGAAGATCCCGA
AAGCGAAAAGAAGAAAACAGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005570XLOC_005570Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009930-proteinTCONS_00009930-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009930-exon-sc0000100-1575043694:330373..330447TCONS_00009930-exon-sc0000100-1575043694:330373..330447Clytia hemisphaericaexon
TCONS_00009930-exon-sc0000100-1575043694:327364..328874TCONS_00009930-exon-sc0000100-1575043694:327364..328874Clytia hemisphaericaexon
TCONS_00009930-exon-sc0000100-1510915933:330373..330447TCONS_00009930-exon-sc0000100-1510915933:330373..330447Clytia hemisphaericaexon
TCONS_00009930-exon-sc0000100-1510915933:327364..328874TCONS_00009930-exon-sc0000100-1510915933:327364..328874Clytia hemisphaericaexon
TCONS_00009930-exon-sc0000100-1491911889:330373..330447TCONS_00009930-exon-sc0000100-1491911889:330373..330447Clytia hemisphaericaexon
TCONS_00009930-exon-sc0000100-1491911889:327364..328874TCONS_00009930-exon-sc0000100-1491911889:327364..328874Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:327364..330447 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0952482	0.150747	0	0	5.2138	3.6017	6.72621	7.63704	2.28559	3.76173	0.721363	0.365005	0.938793	0.892978	0.586066	0.914878	0.86625	0.674501	0.0680427	0.0425419	0.209683	0.0213319	1.06253	1.91172	1.47111	2.16952	11.4752	7.80822	4.24356	0.664582
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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