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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009924 ID=TCONS_00009924|Name=TCONS_00009924|organism=Clytia hemisphaerica|type=transcript|length=1683bp
AAAACGAAAGTCTGAAGCTGCTTTGACAATCATTGACATAATTATTACAA
AATGTGAATTTTCAAACGATTTCCACGTTAAACATAACCAAGCattaatt
ttaaaagatttgcaAAGGTTCACAGACGCTATCAAAATACTAGAAGAAAC
GTTATCATCGTCCAAAGTGGACACCATAAATATGCGATACGTTCTAGGGG
TGAAAAACAACCTAGCATCATTTTATCGAAATATTGGCAACCACAAGAAA
AGCTTGGAGATGCATGAAgagctttttaaaaaacaatctgaaCTTTATGG
TGAATATGATGAAGTAACACTAATTACTATGTGTAACCTGGTGAGTGATT
ATTCAAACGAGGGTGATCATGAAAACGCCATTTCATTGGGTGAAAGAGTA
CTGCAGAGTACGAATCAAGCTTTTggtgaaaacaatgaaactacaCTAAT
AACAAAATTCAACTTAGCCCttcaatattcaaaaatcaaaaaatattcga
aAGCGATCGAGTTGTATACAGATGTTATGAATAGGGATATCCATACGTTG
GGTGAAAACCACGAGAAAACATTAAACACAAAATATTCTCTTGCCGATTG
CTACAGGATGCAGAACGATTACATCAAAGCGATCGAGTTATATACAGATG
TTATGAATAGGAGAATCCATACTTTGGGTGAAAACCAtgagaaaacatta
aaaataaaatattggcTTGCCAATTGCTACTATGGGCAGAACAATTACAT
CAAAGCGATCGAGTTATATACAGATGTTATGAATAGGAGAATCCATACTT
TGGGTGAAAACCACGAGGAAACATTAGAAACAAAATATTCTCTTGCCGAT
TGCTACTATGGGCAGAACAATTACATAAAAGCAATCGAGTTATATACAGA
TGTTATGAATAGGAGAATCCATACTTTGGGTGAAAACCACGAGGAAACAT
TAGAAACAAAATATTGGCTTGCCGAGTGCTACTATGGGCAGAACAATTAC
ATCAAAGCGATCGAGCTATATACAGATGTTATGAATAGGAGAATCCATAC
TTTGGGTGAAAACCATGAGAAAACATTAGAAGCAAAATATTCGCTTGCCG
ATTGCTATGCAATGCAGAACGATTACAGCAATTAGCTGGGATTGATATTC
TTATATTTTCTATGGATGAGGAtctcaattcttttgttttcaagacagaa
aattcagtggcgatggaaaaaaatagcataatattttgcagggAGGATTG
GCTTATTGGATCATTTTCAGTCAGgataaaaattggagtataatttacca
ctggggacgatattttggccaatttttccagtggggacgggtcccagtgg
gtctgtgagaaggttCCTTCCGTTACTTAAGTGTGTTAATTTCATCGGGA
ATTAAATCAGGGGGTTTAGCGGTTCTAGGCTAAATACCCAAAATTAAGAT
CGACCCTACCGCCAAATTACATACCCGATTGAATATCAAGTAAAATTGTC
TTGGGTCGGGATAGAGAGCACTAGGCCTTAAGTCTTCGCTAATCCACCGG
AAATTACAAAATCCattaaccgccaaattaaatataCCCGCCTAAGGAAG
CCTTTCGGCTGAACACCAAATCAAAAACACGCCAACATTAATACACTTTT
TAAGGtagtttttaaatataaaatgcATTTATA Run BLAST on NCBI transcript from alignment at sc0000100:261566..263626- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009924 ID=TCONS_00009924|Name=TCONS_00009924|organism=Clytia hemisphaerica|type=transcript|length=2061bp|location=Sequence derived from alignment at sc0000100:261566..263626- (Clytia hemisphaerica)
AAAACGAAAGTCTGAAGCTGCTTTGACAATCATTGACATAATTATTACAA
AATGTGAATTTTCAAACGATTTCCACGTTAAACATAACCAAGCATTAATT
TTAAAAGATTTGCAAAGGTTCACAGACGCTATCAAAATACTAGAAGAAAC
GTTATCATCGTCCAAAGTGGACACCATAAATATGCGATACGTTCTAGGGG
TGAAAAACAACCTAGCATCATTTTATCGAAATATTGGCAACCACAAGAAA
AGCTTGGAGATGCATGAAGAGCTTTTTAAAAAACAATCTGAACTTTATGG
TGAATATGATGAAGTAACACTAATTACTATGTGTAACCTGGTGAGTGATT
ATTCAAACGAGGGTGATCATGAAAACGCCATTTCATTGGGTGAAAGAGTA
CTGCAGAGTACGAATCAAGCTTTTGGTGAAAACAATGAAACTACACTAAT
AACAAAATTCAACTTAGCCCTTCAATATTCAAAAATCAAAAAATATTCGA
AAGCGATCGAGTTGTATACAGATGTTATGAATAGGGATATCCATACGTTG
GGTGAAAACCACGAGAAAACATTAAACACAAAATATTCTCTTGCCGATTG
CTACAGGATGCAGAACGATTACATCAAAGCAATCGAGTTATATACAGATG
TTATGAATAGGAGAATCCATACATTGGGCGATAACCACGAGAAAACATTA
AAAACAAAATATTTTCTTGCCGAGTGCTACAGGATGCAGAACGATTACGT
CAAAGCAATCGAGTTATATACAGATGTTATGAATAGGAGAATCCATATAT
TGGGTGATAACCACGAGGAAACATTAAAAACAAAATATTGGCTTGCCAAT
TGCTACTATGGGCAGAACAATTACATCAAAGCGATCGAGTTATGTACAGA
TGTTATGAATAGGAGAATCCATACTTTGGGTGAAAACCACAAGGAAACAT
TAGAAACAAAATATTTTCTTGCCGACTGCTACAGGATGCAGAACGATTAC
ATCAAAGCGATCGAGTTATATACAGATGTTATGAATAGGAGAATCCATAC
TTTGGGTGAAAACCATGAGAAAACATTAAAAATAAAATATTGGCTTGCCA
ATTGCTACTATGGGCAGAACAATTACATCAAAGCGATCGAGTTATATACA
GATGTTATGAATAGGAGAATCCATACTTTGGGTGAAAACCACGAGGAAAC
ATTAGAAACAAAATATTCTCTTGCCGATTGCTACTATGGGCAGAACAATT
ACATAAAAGCAATCGAGTTATATACAGATGTTATGAATAGGAGAATCCAT
ACTTTGGGTGAAAACCACGAGGAAACATTAGAAACAAAATATTGGCTTGC
CGAGTGCTACTATGGGCAGAACAATTACATCAAAGCGATCGAGCTATATA
CAGATGTTATGAATAGGAGAATCCATACTTTGGGTGAAAACCATGAGAAA
ACATTAGAAGCAAAATATTCGCTTGCCGATTGCTATGCAATGCAGAACGA
TTACAGCAATTAGCTGGGATTGATATTCTTATATTTTCTATGGATGAGGA
TCTCAATTCTTTTGTTTTCAAGACAGAAAATTCAGTGGCGATGGAAAAAA
ATAGCATAATATTTTGCAGGGAGGATTGGCTTATTGGATCATTTTCAGTC
AGGATAAAAATTGGAGTATAATTTACCACTGGGGACGATATTTTGGCCAA
TTTTTCCAGTGGGGACGGGTCCCAGTGGGTCTGTGAGAAGGTTCCTTCCG
TTACTTAAGTGTGTTAATTTCATCGGGAATTAAATCAGGGGGTTTAGCGG
TTCTAGGCTAAATACCCAAAATTAAGATCGACCCTACCGCCAAATTACAT
ACCCGATTGAATATCAAGTAAAATTGTCTTGGGTCGGGATAGAGAGCACT
AGGCCTTAAGTCTTCGCTAATCCACCGGAAATTACAAAATCCATTAACCG
CCAAATTAAATATACCCGCCTAAGGAAGCCTTTCGGCTGAACACCAAATC
AAAAACACGCCAACATTAATACACTTTTTAAGGTAGTTTTTAAATATAAA
ATGCATTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009924-exon-sc0000100-1575043694:263005..263626 | TCONS_00009924-exon-sc0000100-1575043694:263005..263626 | Clytia hemisphaerica | exon |
| TCONS_00009924-exon-sc0000100-1575043694:261566..262626 | TCONS_00009924-exon-sc0000100-1575043694:261566..262626 | Clytia hemisphaerica | exon |
| TCONS_00009924-exon-sc0000100-1510915933:263005..263626 | TCONS_00009924-exon-sc0000100-1510915933:263005..263626 | Clytia hemisphaerica | exon |
| TCONS_00009924-exon-sc0000100-1510915933:261566..262626 | TCONS_00009924-exon-sc0000100-1510915933:261566..262626 | Clytia hemisphaerica | exon |
| TCONS_00009924-exon-sc0000100-1491911889:263005..263626 | TCONS_00009924-exon-sc0000100-1491911889:263005..263626 | Clytia hemisphaerica | exon |
| TCONS_00009924-exon-sc0000100-1491911889:261566..262626 | TCONS_00009924-exon-sc0000100-1491911889:261566..262626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000100 | supercontig | sc0000100:261566..263626 - |
Blast
The following BLAST results are available for this feature:
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