TCONS_00009910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009910
Unique NameTCONS_00009910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009910 ID=TCONS_00009910|Name=TCONS_00009910|organism=Clytia hemisphaerica|type=transcript|length=3750bp
ctttcgagTACTGTCTCAAACATGCgaacaagaagaaaaagaaacaaaaa
actattatttctaattaaaaaaatattatgttAGACTCTTATAAATgcat
tttatatttaaaaactaCCTTAAAAAGTGTATTAATGTTGGCGTGTTTTT
GATTTGGTGTTCAGCCGAAAGGCTTCCTTAGGCGGGtatatttaatttgg
cggttaatGGATTTTGTAATTTCCGGTGGATTAGCGAAGACTTAAGGCCT
AGTGCTCTCTATCCCGACCCAAGACAATTTTACTTGATATTCAATCGGGT
ATGTAATTTGGCGGTAGGGTCGATCTTAATTTTGGGTATTTAGCCTAGAA
CCGCTAAACCCCCTGATTTAATTCCCGATGAAATTAACACACTTAAGTAA
CGGAAGGaaccttctcacagacccactgggacccgtccccactggaaaaa
ttggccaaaatatcgtccccagtggtaaattatactccaatttttatcCT
GACTGAAAATGATCCAATAAGCCAATCCTccctgcaaaatattatgctat
ttttttccatcgccactgaattttctgtcttgaaaacaaaagaattgaga
TCCTCATCCATAGAAAATATAAGAATATCAATCCCAGCTAATTGCTGTAA
TCGTTCTGCATTGCATAGCAATCGGCAAGCGAATATTTTGCTTCTAATGT
TTTCTCATGGTTTTCACCCAAAGTATGGATTCTCCTATTCATAACATCTG
TATATAGCTCGATCGCTTTGATGTAATTGTTCTGCCCATAGTAGCACTCG
GCAAGCCAATATTTTGTTTCTAATGTTTCCTCGTGGTTTTCACCCAAAGT
ATGGATTCTCCTATTCATAACATCTGTATATAACTCGATTGCTTTTATGT
AATTGTTCTGCCCATAGTAGCAATCGGCAAGAGAATATTTTGTTTCTAAT
GTTTCCTCGTGGTTTTCACCCAAAGTATGGATTCTCCTATTCATAACATC
TGTATATAACTCGATCGCTTTGATGTAATTGTTCTGCCCATAGTAGCAAT
TGGCAAgccaatattttatttttaatgttttctcaTGGTTTTCACCCAAA
GTATGGATTCTCCTATTCATAACATCTGTATATAACTCGATCGCTTTGAT
GTAATCGTTCTGCATCCTGTAGCAGTCggcaagaaaatattttgtttcta
aTGTTTCCTTGTGGTTTTCACCCAAAGTATGGATTCTCCTATTCATAACA
TCTGTACATAACTCGATCGCTTTGATGTAATTGTTCTGCCCATAGTAGCA
ATTGGCAAgccaatattttgtttttaatgtttccTCGTGGTTATCACCCA
ATATATGGATTCTCCTATTCATAACATCTGTATATAACTCGATTGCTTTG
ATGTAATCGTTCTGCATCCTGTAGCAATCGGCAAGAGAATATTTTGTGTT
TAATGTTTTCTCGTGGTTTTCACCCAACGTATGGATATCCCTATTCATAA
CATCTGTATACAACTCGATCGCTttcgaatattttttgatttttgaatat
tgaaGGGCTAAGTTGAATTTTGTTATTAGtgtagtttcattgttttcacc
AAAAGCTTGATTCGTACTCTGCAGTACTCTTTCACCCAATGAAATGGCGT
TTTCATGATCACCCTCGTTTGAATAATCACTCACCAGGTTACACATAGTA
ATTAGTGTTACTTCATCATATTCACCATAAAGttcagattgttttttaaa
aagctcTTCATGCATCTCCAAGCTTTTCTTGTGGTTGCCAATATTTCGAT
AAAATGATGCTAGGTTGTTTTTCACCCCTAGAACGTATCGCATATTTATG
GTGTCCACTTTGGACGATGATAACGTTTCTTCTAGTATTTTGATAGCGTC
TGTGAACCTTtgcaaatcttttaaaattaatGCTTGGTTATGTTTAACGT
GGAAATCGTTTGAAAATTCACATTTTGTAATAATTATGTCAATGATTGTC
AAAGCAGCTTCAGACTTTCGTTTTACTTTCGCGATGTCTCTTATTTCATC
AACGTAATCGATCATCTCTTCATAAAAGCTTTCGTCATCAACTTCAGTTG
TTAAGATTTCAAAGAAATGATTAAAATATTCTTTCGCAAAGTCGACATGA
TGAATAGAACGAACTTTTTGTTCACTGtcaatttctttaaagaaagcTTT
TAAACACTTGATAAGATAACCGATTTCATTAGTTTTACGCACTGTTGCTT
GAATCAACGAATGGATGGTCACGATTATTTCATTGTCAGTGTTTCGTTTA
TTTATAATCGATGCACTTTCTAACTGGTGAAGGGCAGAATCGAGATCAAT
CTTGGATGATTCTTCAGCATCGAGTATACGGACaacattcattgaaattt
ctTCACTTCTCAAATAACACATTCGGTTTAGAATCTCAATAGCCAGTTTA
GAGTCTTCATCCTGCTCTGAGAGACGTTTAAGATTAATCTCAATGGCAGC
AATGGTTGAGACGCTGTGATGGGTTTTCGATATCGGTTTCTGGAGGACGT
TTGCTGTTTCCAATTTCAACAATTCGATAAATTCTTCAGAGGTCATCGTT
GTATTGCTCAAAGCTGATATGACCTGCTGAAGACCAAGGGGATGTCCCTG
AATCAAGTCATCGATGTTCTTGATTTGTTGCTTGGTAAGATTAGCTCTAC
ACTGTTCAGTTAATAGTGTATTTGATTCTACTACAGTTAACCTTTCCACC
gcgattttctcaaaatctggaGTAGGAAAGTCTTTCTTTTGTGACGTAAT
CAAAGCTGTGTATTTGTTGTACGGCGGAAGAAACTTTTTGATGACGTTAA
ATTCCCATGCGTcgtcaaaaacaaataaaggtTCGATGTCGTCAAGGTAA
CCATAAACGCTGGCGATGATGGTTGGCATACTCTTTATATTTTGATGCTC
GTCTCGGATTTCTAAGTTCAATTGTTCAGCAAGTTCGATAAACGCTTTAT
TGAGTGAATCCTCGCTTTCACTTTTTAACCATATCACATTCTCGTTAAAG
TGTTTTCCGTAAACCTCTACGTATCGTCTAACGATCTCCGATTTTCCTGT
TCCAGCAGCTGCGTGCAAGATGACACGGTAAGCCTTGGTGTTGTTTTGTT
TGATTAGTTGGTCAATCTGTTTCAAGATGTCCTCTCTACCGGTAAAACTA
GCGACGGCCTTGGTGAATCCATACCTCAATGGTGAAAGAAGATCATCAAT
CTCCTGTTGTGGTACACCTAAAGCAATCAGTGACGGTACAATAAATTGAT
AAGCATCTTGGTACAACTTATTCTCCATGTACATGGTTGAATGTTGACCG
ATATTTCTACCAATACTCATTCTTTTGCAATGCGCTCCGCGTTTAATGTC
GGTGTTGTTTGGGCGTTTCTGCCATCCGGTTAAAGGTGGATCCACATTGG
GACAGAAATGAATGATCAGGAAGTCCAATAAAGTACTATCAAAAGTATCA
GAATAAGTTTCGTCGGTGTTTTGTGGAAGTAATTTGAAGTACCATTGTGC
TGATATTTTATTCTGAGAACGCATTTGTTTCAATTGTGgtttaagttttt
tgaattcTTGATATAAGAGCTTGGGGTCTTGAGGGAAAACTTCGTGGAAG
AGGTCTCTCTTGACAACCTCGCATTTATCAATGAGCACTTTCATTTTTCG
AGCGTTCTTTCGGTTCTCTCCTGTCCTTATCGACTTGGCCGGTGTTGGTG
Run BLAST on NCBI

transcript from alignment at sc0000100:261477..265352+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009910 ID=TCONS_00009910|Name=TCONS_00009910|organism=Clytia hemisphaerica|type=transcript|length=3876bp|location=Sequence derived from alignment at sc0000100:261477..265352+ (Clytia hemisphaerica)
ctttcgagTACTGTCTCAAACATGCgaacaagaagaaaaagaaacaaaaa
actattatttctaattaaaaaaatattatgttAGACTCTTATAAATgcat
tttatatttaaaaactaCCTTAAAAAGTGTATTAATGTTGGCGTGTTTTT
GATTTGGTGTTCAGCCGAAAGGCTTCCTTAGGCGGGtatatttaatttgg
cggttaatGGATTTTGTAATTTCCGGTGGATTAGCGAAGACTTAAGGCCT
AGTGCTCTCTATCCCGACCCAAGACAATTTTACTTGATATTCAATCGGGT
ATGTAATTTGGCGGTAGGGTCGATCTTAATTTTGGGTATTTAGCCTAGAA
CCGCTAAACCCCCTGATTTAATTCCCGATGAAATTAACACACTTAAGTAA
CGGAAGGaaccttctcacagacccactgggacccgtccccactggaaaaa
ttggccaaaatatcgtccccagtggtaaattatactccaatttttatcCT
GACTGAAAATGATCCAATAAGCCAATCCTccctgcaaaatattatgctat
ttttttccatcgccactgaattttctgtcttgaaaacaaaagaattgaga
TCCTCATCCATAGAAAATATAAGAATATCAATCCCAGCTAATTGCTGTAA
TCGTTCTGCATTGCATAGCAATCGGCAAGCGAATATTTTGCTTCTAATGT
TTTCTCATGGTTTTCACCCAAAGTATGGATTCTCCTATTCATAACATCTG
TATATAGCTCGATCGCTTTGATGTAATTGTTCTGCCCATAGTAGCACTCG
GCAAGCCAATATTTTGTTTCTAATGTTTCCTCGTGGTTTTCACCCAAAGT
ATGGATTCTCCTATTCATAACATCTGTATATAACTCGATTGCTTTTATGT
AATTGTTCTGCCCATAGTAGCAATCGGCAAGAGAATATTTTGTTTCTAAT
GTTTCCTCGTGGTTTTCACCCAAAGTATGGATTCTCCTATTCATAACATC
TGTATATAACTCGATCGCTTTGATGTAATTGTTCTGCCCATAGTAGCAAT
TGGCAAgccaatattttatttttaatgttttctcaTGGTTTTCACCCAAA
GTATGGATTCTCCTATTCATAACATCTGTATATAACTCGATCGCTTTGAT
GTAATCGTTCTGCATCCTGTAGCAGTCggcaagaaaatattttgtttcta
aTGTTTCCTTGTGGTTTTCACCCAAAGTATGGATTCTCCTATTCATAACA
TCTGTACATAACTCGATCGCTTTGATGTAATTGTTCTGCCCATAGTAGCA
ATTGGCAAgccaatattttgtttttaatgtttccTCGTGGTTATCACCCA
ATATATGGATTCTCCTATTCATAACATCTGTATATAACTCGATTGCTTTG
ACGTAATCGTTCTGCATCCTGTAGCACTCggcaagaaaatattttgtttt
taatgttttctcGTGGTTATCGCCCAATGTATGGATTCTCCTATTCATAA
CATCTGTATATAACTCGATTGCTTTGATGTAATCGTTCTGCATCCTGTAG
CAATCGGCAAGAGAATATTTTGTGTTTAATGTTTTCTCGTGGTTTTCACC
CAACGTATGGATATCCCTATTCATAACATCTGTATACAACTCGATCGCTt
tcgaatattttttgatttttgaatattgaaGGGCTAAGTTGAATTTTGTT
ATTAGtgtagtttcattgttttcaccAAAAGCTTGATTCGTACTCTGCAG
TACTCTTTCACCCAATGAAATGGCGTTTTCATGATCACCCTCGTTTGAAT
AATCACTCACCAGGTTACACATAGTAATTAGTGTTACTTCATCATATTCA
CCATAAAGttcagattgttttttaaaaagctcTTCATGCATCTCCAAGCT
TTTCTTGTGGTTGCCAATATTTCGATAAAATGATGCTAGGTTGTTTTTCA
CCCCTAGAACGTATCGCATATTTATGGTGTCCACTTTGGACGATGATAAC
GTTTCTTCTAGTATTTTGATAGCGTCTGTGAACCTTtgcaaatcttttaa
aattaatGCTTGGTTATGTTTAACGTGGAAATCGTTTGAAAATTCACATT
TTGTAATAATTATGTCAATGATTGTCAAAGCAGCTTCAGACTTTCGTTTT
ACTTTCGCGATGTCTCTTATTTCATCAACGTAATCGATCATCTCTTCATA
AAAGCTTTCGTCATCAACTTCAGTTGTTAAGATTTCAAAGAAATGATTAA
AATATTCTTTCGCAAAGTCGACATGATGAATAGAACGAACTTTTTGTTCA
CTGtcaatttctttaaagaaagcTTTTAAACACTTGATAAGATAACCGAT
TTCATTAGTTTTACGCACTGTTGCTTGAATCAACGAATGGATGGTCACGA
TTATTTCATTGTCAGTGTTTCGTTTATTTATAATCGATGCACTTTCTAAC
TGGTGAAGGGCAGAATCGAGATCAATCTTGGATGATTCTTCAGCATCGAG
TATACGGACaacattcattgaaatttctTCACTTCTCAAATAACACATTC
GGTTTAGAATCTCAATAGCCAGTTTAGAGTCTTCATCCTGCTCTGAGAGA
CGTTTAAGATTAATCTCAATGGCAGCAATGGTTGAGACGCTGTGATGGGT
TTTCGATATCGGTTTCTGGAGGACGTTTGCTGTTTCCAATTTCAACAATT
CGATAAATTCTTCAGAGGTCATCGTTGTATTGCTCAAAGCTGATATGACC
TGCTGAAGACCAAGGGGATGTCCCTGAATCAAGTCATCGATGTTCTTGAT
TTGTTGCTTGGTAAGATTAGCTCTACACTGTTCAGTTAATAGTGTATTTG
ATTCTACTACAGTTAACCTTTCCACCgcgattttctcaaaatctggaGTA
GGAAAGTCTTTCTTTTGTGACGTAATCAAAGCTGTGTATTTGTTGTACGG
CGGAAGAAACTTTTTGATGACGTTAAATTCCCATGCGTcgtcaaaaacaa
ataaaggtTCGATGTCGTCAAGGTAACCATAAACGCTGGCGATGATGGTT
GGCATACTCTTTATATTTTGATGCTCGTCTCGGATTTCTAAGTTCAATTG
TTCAGCAAGTTCGATAAACGCTTTATTGAGTGAATCCTCGCTTTCACTTT
TTAACCATATCACATTCTCGTTAAAGTGTTTTCCGTAAACCTCTACGTAT
CGTCTAACGATCTCCGATTTTCCTGTTCCAGCAGCTGCGTGCAAGATGAC
ACGGTAAGCCTTGGTGTTGTTTTGTTTGATTAGTTGGTCAATCTGTTTCA
AGATGTCCTCTCTACCGGTAAAACTAGCGACGGCCTTGGTGAATCCATAC
CTCAATGGTGAAAGAAGATCATCAATCTCCTGTTGTGGTACACCTAAAGC
AATCAGTGACGGTACAATAAATTGATAAGCATCTTGGTACAACTTATTCT
CCATGTACATGGTTGAATGTTGACCGATATTTCTACCAATACTCATTCTT
TTGCAATGCGCTCCGCGTTTAATGTCGGTGTTGTTTGGGCGTTTCTGCCA
TCCGGTTAAAGGTGGATCCACATTGGGACAGAAATGAATGATCAGGAAGT
CCAATAAAGTACTATCAAAAGTATCAGAATAAGTTTCGTCGGTGTTTTGT
GGAAGTAATTTGAAGTACCATTGTGCTGATATTTTATTCTGAGAACGCAT
TTGTTTCAATTGTGgtttaagttttttgaattcTTGATATAAGAGCTTGG
GGTCTTGAGGGAAAACTTCGTGGAAGAGGTCTCTCTTGACAACCTCGCAT
TTATCAATGAGCACTTTCATTTTTCGAGCGTTCTTTCGGTTCTCTCCTGT
CCTTATCGACTTGGCCGGTGTTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005557XLOC_005557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009910-exon-sc0000100-1491911889:261477..262851TCONS_00009910-exon-sc0000100-1491911889:261477..262851Clytia hemisphaericaexon
TCONS_00009910-exon-sc0000100-1510915933:261477..262851TCONS_00009910-exon-sc0000100-1510915933:261477..262851Clytia hemisphaericaexon
TCONS_00009910-exon-sc0000100-1575043694:261477..262851TCONS_00009910-exon-sc0000100-1575043694:261477..262851Clytia hemisphaericaexon
TCONS_00009910-exon-sc0000100-1491911889:262978..265352TCONS_00009910-exon-sc0000100-1491911889:262978..265352Clytia hemisphaericaexon
TCONS_00009910-exon-sc0000100-1510915933:262978..265352TCONS_00009910-exon-sc0000100-1510915933:262978..265352Clytia hemisphaericaexon
TCONS_00009910-exon-sc0000100-1575043694:262978..265352TCONS_00009910-exon-sc0000100-1575043694:262978..265352Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:261477..265352 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105824	0.0559455	0.0579193	0.0164699	0.330306	0.28595	1.37894	1.73257	0.524612	0.474134	0.54205	0.566298	1.6101	0.847295	1.80421	2.40043	1.22986	0.804019	1.69354	1.29192	0.810025	0.769139	0.6294	0.635601	0.665545	0.818887	0.38366	0.439281	0.632188	0.711356
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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