TCONS_00009867 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009867
Unique NameTCONS_00009867
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009867 ID=TCONS_00009867|Name=TCONS_00009867|organism=Clytia hemisphaerica|type=transcript|length=589bp
ctttttttatattatgttACGTCTTATGTTCAAACCCTACAATAATGATA
ATGTGTACATCCTGTCGTAACCAGTGGTAGATGTAAAAAGGGCTAGCTGT
GAAGTATCTAGTGTTTGGAAGCGGTCTTTTACAGAAAGGATTTGTTGGCA
TGGTTTGGGTTTTTTTAAACCTAGTTCATAGGTTGGTGTTAAGATTTGAT
GCATCTTCCCCTCATCCAAGACACTaaaaattgaggattttccACAGAAA
CCTTTCCAAGGTGAATAGGCAATGGCGATGTTTGCTGTCACACTTTtcga
aataaatcaaaattattgCAGGCCTCGTTTTCATATTGGATACTCACTTC
AAACGATATTTACAAATGTAGTATGTTTCCCCAAAAGACCGTTATCAATT
CTGATAAAAACACGCAAACGCGTAAAAACAAACCCTGGAAACAAACCATG
TCTAGTTATGCCTCCTGACAACAGAAATTAAATACTTAAGCGTATTAATT
TTCACTGCTAAGCCCTTTCTCCATATCCACTTGTAGTGTTATAAATATCT
ACAGCGCATGcgcttaaaatgaaaataatacagAAAATA
Run BLAST on NCBI

transcript from alignment at sc0000099:168638..169226

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009867 ID=TCONS_00009867|Name=TCONS_00009867|organism=Clytia hemisphaerica|type=transcript|length=589bp|location=Sequence derived from alignment at sc0000099:168638..169226 (Clytia hemisphaerica)
TATTTTctgtattattttcattttaagcgCATGCGCTGTAGATATTTATA
ACACTACAAGTGGATATGGAGAAAGGGCTTAGCAGTGAAAATTAATACGC
TTAAGTATTTAATTTCTGTTGTCAGGAGGCATAACTAGACATGGTTTGTT
TCCAGGGTTTGTTTTTACGCGTTTGCGTGTTTTTATCAGAATTGATAACG
GTCTTTTGGGGAAACATACTACATTTGTAAATATCGTTTGAAGTGAGTAT
CCAATATGAAAACGAGGCCTGcaataattttgatttatttcgaAAAGTGT
GACAGCAAACATCGCCATTGCCTATTCACCTTGGAAAGGTTTCTGTggaa
aatcctcaatttttAGTGTCTTGGATGAGGGGAAGATGCATCAAATCTTA
ACACCAACCTATGAACTAGGTTTAAAAAAACCCAAACCATGCCAACAAAT
CCTTTCTGTAAAAGACCGCTTCCAAACACTAGATACTTCACAGCTAGCCC
TTTTTACATCTACCACTGGTTACGACAGGATGTACACATTATCATTATTG
TAGGGTTTGAACATAAGACGTaacataatataaaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005521XLOC_005521Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009867-exon-sc0000099-1491911889:168638..169226TCONS_00009867-exon-sc0000099-1491911889:168638..169226Clytia hemisphaericaexon
TCONS_00009867-exon-sc0000099-1510915933:168638..169226TCONS_00009867-exon-sc0000099-1510915933:168638..169226Clytia hemisphaericaexon
TCONS_00009867-exon-sc0000099-1575043694:168638..169226TCONS_00009867-exon-sc0000099-1575043694:168638..169226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:168638..169226 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.251809	0.596949	3.24087	2.4722	0.865422	0.584708	0.472944	0.621789	0.372555	0.128967	0	0	0.490608	0.359184	0.595478	1.03854	2.16644	0.924622	0.856381	0.194644	1.10263	0.626227	0.128018	0.136625	0.103625	0.105578
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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