TCONS_00009759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009759
Unique NameTCONS_00009759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009759 ID=TCONS_00009759|Name=TCONS_00009759|organism=Clytia hemisphaerica|type=transcript|length=378bp
gtCCGGGGGTAGGGAGTAGTGAAAGATCTAAAAAACTTGCCTTGTCTAGT
TTAAcaacttgctctgtttgagggtaattttgaatgtctggGGGTCAACC
CGGTATAATACCAAGTTTATGTTTGTGTGCTTTTCAAGGAATTTTATTTG
ATTCTGACAGACtggaggacgacggtaaatcagcactttgaccgtcctcg
attttgcaggtctgaactgcgggttattccaaatcgcttcagtcactcta
ccgtcctcaaaagtatGCAAATACAAAAACTCGCTGATAACAAACACGGA
CGGAAAATATAATAGGGTGGTGAGCTGCAACAAAACCAGACTGTTAGCAC
TAGCTAGTCTACAACGTTTTCCCTCCTT
Run BLAST on NCBI

protein sequence of TCONS_00009759-protein

>TCONS_00009759-protein ID=TCONS_00009759-protein|Name=TCONS_00009759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
KEGKRCRLASANSLVLLQLTTLLYFPSVFVISEFLYLHTFEDGRVTEAIW
NNPQFRPAKSRTVKVLIYRRPPVCQNQIKFLEKHTNINLVLYRVDPQTFK
ITLKQSKLLN
Run BLAST on NCBI

transcript from alignment at sc0000098:48525..48902

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009759 ID=TCONS_00009759|Name=TCONS_00009759|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at sc0000098:48525..48902 (Clytia hemisphaerica)
AAGGAGGGAAAACGTTGTAGACTAGCTAGTGCTAACAGTCTGGTTTTGTT
GCAGCTCACCACCCTATTATATTTTCCGTCCGTGTTTGTTATCAGCGAGT
TTTTGTATTTGCatacttttgaggacggtagagtgactgaagcgatttgg
aataacccgcagttcagacctgcaaaatcgaggacggtcaaagtgctgat
ttaccgtcgtcctccaGTCTGTCAGAATCAAATAAAATTCCTTGAAAAGC
ACACAAACATAAACTTGGTATTATACCGGGTTGACCCccagacattcaaa
attaccctcaaacagagcaagttgTTAAACTAGACAAGGCAAGTTTTTTA
GATCTTTCACTACTCCCTACCCCCGGac

Coding sequence (CDS) from alignment at sc0000098:48525..48902

>TCONS_00009759 ID=TCONS_00009759|Name=TCONS_00009759|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000098:48525..48902 (Clytia hemisphaerica)
AAGGAGGGAAAACGTTGTAGACTAGCTAGTGCTAACAGTCTGGTTTTGTT
GCAGCTCACCACCCTATTATATTTTCCGTCCGTGTTTGTTATCAGCGAGT
TTTTGTATTTGCatacttttgaggacggtagagtgactgaagcgatttgg
aataacccgcagttcagacctgcaaaatcgaggacggtcaaagtgctgat
ttaccgtcgtcctccaGTCTGTCAGAATCAAATAAAATTCCTTGAAAAGC
ACACAAACATAAACTTGGTATTATACCGGGTTGACCCccagacattcaaa
attaccctcaaacagagcaagttgTTAAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005451XLOC_005451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009759-exon-sc0000098-1491911889:48525..48902TCONS_00009759-exon-sc0000098-1491911889:48525..48902Clytia hemisphaericaexon
TCONS_00009759-exon-sc0000098-1510915933:48525..48902TCONS_00009759-exon-sc0000098-1510915933:48525..48902Clytia hemisphaericaexon
TCONS_00009759-exon-sc0000098-1575043694:48525..48902TCONS_00009759-exon-sc0000098-1575043694:48525..48902Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009759-proteinTCONS_00009759-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:48525..48902 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.16806	0.614137	1.46939	2.28218	3.73192	2.94611	3.00702	4.25914	0.895825	1.66171	1.53882	1.31893	0.85526	1.37841	1.96312	1.84336	2.79209	2.67142	1.14171	1.43148	1.35041	1.61854	1.81472	0.43766	2.70802	0.80462	0.762752	0	0.726245	0.945409
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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