TCONS_00009732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009732
Unique NameTCONS_00009732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009732 ID=TCONS_00009732|Name=TCONS_00009732|organism=Clytia hemisphaerica|type=transcript|length=948bp
AGTTAATACCCCCGGATTAATATCGGGGTGTTTCTGTATAAGTACCAGCA
AGAAATCCCACGTGGGcttatcaaagatggtggaAAAGTTCCAGACCATC
CAGAGCTGAGCTGTCCAGACAGAGAGAAATTTTAAGACCCACATAAAAAT
TGTCAGCAAGAAAGACAGTATTTACAGATCTACCGGAGATGACCAACAAT
TCTTTAGATGTACCGCTGAAACAGCAGGCTCATCAAACCATTTGGTCCAG
GAGAAGTTTCCAAACAAGAATGTGCAGCTTGTCTTTTACCTTTCACACGT
AAGTGACCTTGTGACCTTAAATATTCCCAACGACCGCTTCAGAATCATTC
CGGAACCCTAAGCCAACAACAATCACCCCTGAGCCAACATTGACACAGAA
CCCTACCGATAACAATGACTCAAGAACCGGCCACAACTACGACAAAAATC
TCATGTCCTGACGACTTATCTGGTGACAAAGAAGACAGTCGATATGCTCA
TCCCGCTGATAATAAACAATTCATAACTTGTACAAACAAAATCAGAGTTG
GGTTATGTTTAAGTTATCCAGTTACACTTGTCTTATCAATGAATGTGGAC
TTGGTAGTTGAAGGAACAAATTCTGACTTAAACTATGTTTCGTTAATGGA
ATTTGTTATATGCCCGTAGATGTTCATCAGGAAACCTTGGACAATGAGTA
ATGCATACATTTCCCATTGATGGttcgaaattttaaaaatgtggaCAAAT
AATTGATGGGATTGACATGATGAAATTGATTTAATGTCAAGAGAACCTGG
TTGGGTAACTATATTTCTAacttgtacaattttttttgcaaagttCATCC
AACGTTCACGGCGTGTATTTTATGCTAGATGAGGACTAAAGTTTGCTACT
GTATCCTGATTTTGCTCATGTTTATTATGCATGTGAGTCTTTCTGAAA
Run BLAST on NCBI

transcript from alignment at sc0000098:154522..162566-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009732 ID=TCONS_00009732|Name=TCONS_00009732|organism=Clytia hemisphaerica|type=transcript|length=8045bp|location=Sequence derived from alignment at sc0000098:154522..162566- (Clytia hemisphaerica)
AGTTAATACCCCCGGATTAATATCGGGGTGTTTCTGTATAAGTACCAGCA
AGAAATCCCACGTGGGCTTATCAAAGATGGTGGAAAAGTTCCAGACCATC
CAGAGCTGAGCTGTCCAGACAGAGAGAAATTTTAAGGTATGTATTTTTTA
AATTTGAAACCTCTAACTGTGAACTTTCTTCTAGTTTGGAGATATAATAG
ACATGTGGATTGCAATTGTGGGACCCGTCGTCTAATTTTATTAACTGATT
TATACTATCCTTGGCTTGATCGCTAAAATCGATATTCAAAATTAATTTTT
TATCTCAATGAGCGATATATTGACGATTATAGCCACGTATCTAATATAGA
AAATATGTTTGAATTTTCTATTAATTCGATTATATTCAACTAGATGGTTC
CTGTGGTCGCAAACGCCGGTTTAGCTTGCGCATCCAAAAGCCCTTACCAG
ACGTTACTAATTATATAAAATCGATTATTGATAAAAATCGATAGCTAATT
GATAATTAAGCGATTTTTTAAATATTGATTAAAAACAATTAATAATCCAT
AAATAATCGACGCCTAAAAAATTGAGTTTCGATTATATCCAGACGATCGA
ACTAGTCAAACCAAATCGAACGCAATCGACCAATTGAAATTTGATTGTCA
AACGCAATGGAATCTCAATCGAATATTACCGCAATTTTCAGATTCGATTG
ATATTCGATTGTGTTCGATCGTTGATTCATTGACCCTCGGATTGTTCATC
GCATAATTTCTACGGGAAATTGAAAGTAATTTCATTCTGCTTGTGATGTT
TGAGAGCTTGGATGTTGGGAAGCTGCAAGAATAAAGCCAGACTCAATCTC
AATCGAACGGAATCGATGATCGAACCAGTCGAACAACAAACAATCAAACC
AATCGAATATTACCCAGAATTTTGACGTTCGATTGAGATTCGATTGCGTT
CGACAATCGAATTTCAATTGGTCGATTGCGTTCGATTTGAGATTGTCTGG
TTATATCGATCAGACAGTATAGACTTAAACTTGTCCAGGCTTAGTTAATC
GACGGTTTGTGTAATTTACGATGCGCGATCCAACGATTCACGATGCACGA
TGCACGATCCATGCATATATTATGTTAATTATTCTATTTATGCANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAATTCAGTTGGTGAAATGCTTTTATAAG
AACATGCCAAAAGTAATAATGTAGCCAATGATTCCTTATTTACCTTATTC
ACTGTTCTTAAAAAATAATGAACATACAAAAATGAGTTTGTGTTTTAATA
AATTTTTTGCGCCAAAACTTTTTTCTTTCAGTTTTTTTCTACACAGAAGA
TATAAGTTATTTTAATCATTCTGATTATGATACATAAATTATTTCCGCTT
CTTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCTTTGTCCGTC
CGTCTGTCCGTCCGTTAGTTACCAGCTTTTCTCATGATTGGCTCATTAGT
TTTTTCTGATTTTTTGCACAATGATGCAAAAATGGCAATACCCAAAATGT
GACGGAGCCCGATTTTCGAAAAAAAAATTTTTGGGGCAAATTTGGGCCAA
AAAACGGCTAAAAAACGGGTTTTTTGGACTTTGTGAAAAATTGGATCATT
AATTTTTCTGATTTTTTGCACAATGATGCAAAAATGGCAATACCCAAAAT
GTGACGGAGCCCGATTTTCGAAAAAAAAATTTTTGGGGCAAATTTGGGCC
AAAAAACGGCTAAAAAACGGGTTTTTTGGACTTTGTGAAAAATTGGATCA
TTAATTTTTCTGATTTTTTGCACGAAAGTAGGGTACCATCATAGGTATAA
GAAGAAAAAAAATTTTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAA
TCACTATTAATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATTTT
TTCATGAGATAGATGTTTTTTCTGCTCATGAAGGCTTACTTTTGAAGAAT
ATGTGTGTTTAGACAGGAAATTTGGGTTGCTTGGCGTGTTTTCATAGAAA
AACTGGCCAAATTCAATATTTTTTTATAAGCACATTATCAATTACTTAGG
TATTGGATTTTCTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTACAC
AAAGATGCAAAACTATAAACCCTTAAATGTGACAGAACCCGATTTTCGAA
AAAAAATGTTTTTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAACGGTT
TTTTTGGACTTTGTGAAAAATTGGATCGTTAATTTTTTCTAATTTTTTGC
ATAAATAAAGGGTACAATCATAGGTAAAAGATGGCTTAAGCAGATTTTTG
CAAAAAAAATTTGTTGGCTCAAAAAACGCATTTTATCTAGAAGAATCACT
ATTAATAAGAATACATCAATGTTCTCAGTCAAATCNNTTATAGAAAAACT
GGCCAAATTCGATATTTTTTATAAGCACATTATCAATTGCTTAGGTATTA
GATTGATTGGCTCTTTCATTTTTTACGATTTTTTGCAGAAAGATGCATAA
CTATAAATCCTCAAATGTGACGGAGCCCGATTTTTGGAGAAAAAATTTGG
GTAAATTTCAGCTAAAAAAACGGCCATAAAAGGGTTTTTTGGACTTAGTG
AAATATTGGACCATGGTTTTTTTCTGATTTTTTGTATGAAAGTAGATAAA
AGATGGCTCAAGCAGACTTTTGTAAAAAATGAATTTTTCAGCTCAAAAAA
AGCATCTTGATCAACAAGAATCACTATTCTCAACTTCAGTTGAGCTAGAG
TAGAATCTGAGAATGCCTGTCTGTGTCTCTGTCTGTCACCAAAACTTTGG
GGCAGGCTGGAGACTTTAAAAATGGTCCGATTTGGCTGAAATTTTGCACA
CTTGATCTTTGGGTGAATCCCTGGGGGTGATTTTTTCATTTTTTCAAAAT
TTTGGATTTTTGGGGCCTGGGATGAGTTTTTTGCCAAAACGAGGCTAAAA
CTTTGGGGCAGGCTGGAGACTTCAAAAATTGACCGATTTCGCTGAAATTT
TGCACACTTGATCCTTGGGTGAATATGTGGGGGTGTTTTTTTCATTTTTC
CAAAATTTTGATTTTTGGGGCCTGGGCACGATTTTTTCGCCAAAACGAGG
CTAAAGCTTTGGGGCAGGCTGGAGATTTCAAAAATTGTCCAATTTCGCTT
AAATTTTGCACACTTGATCCTTGGGTGAATATCTGGGGTTTTTTTTTCAT
TTTTCCAAAATTTTGATTTTTGGGGCCTGGGTACAAGTTTTTTTGCCAAA
ACGAGGCCAAAACTTTGGGGCAGGCTGGAGACGTCAAAAATTGTCCGATT
TCGCTGAATTTTTGCACACTTGATCCTTGGGTGAATATCTGGGGGTGTTT
TTTTCATTTTTCCAAAATTTTGATTTTTGGGGCCTGGGCACGAGTTTTTT
TGCCAAAACGAGGCTAAAACTTTGGGGCAGGCTGGAGACGTCAAAAATTG
TCCGATTTCGCTGAAATTTTGCACACTTGATCCTTGGGTAACTCCCTGGA
TTTTACAATTGGGCCTACAAGTAGCTTTGAAAATACTGAAGTTGAGCCAG
TGCGGTTAGCACGTTCGACAGTTAATAAACATACTCAATGTTCTTAGCCA
AATTACTCAATTTTTTGGAGATGTTTTTTTGCTCACGAAGTCTTGAATTT
GAAAGAACAAGAGCATGAAATTTTGGTTTCTAAACGTTTTTTTTATAAGA
AACAAACGACTAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGTTCTGAATGA
TTGTTTAATGGTCACGTCACGTAGATATCAATTATAAACGTGTTAAATGC
ATAATCCAGGTAGGTCCATCAAAGTATCACTTGTTTTAATTTTTTTTTCG
TTATTGTTATAGGATGTTTGTAGCTAGCATTATGAAAACTTATTCGTGCA
TAATTAGAATAATTAACATAATATATGCATGGATTGTGCATCCCGCATCG
TGAATCGTTGGATCGCGCATCGTAAATTACACAAACCGGTTAATCGATAT
AATCAATAATCTTGAGTAATCGATAAATAATCGATAAGTAATCGATATAT
TAGATATCTATTAACCGATAGAATCGATAGGTAATCGATATCCCCCACAT
CAGTGTCAATTCAATGTAAAAAAAACTTAATATGGTATTAGAAATAAAAA
ACTATCAGAATATAATTTTAGATATTTTAAATCTTTTGGTCACAGGGTCA
TGTTCTGAAAAATTACCATTTTCATTTCAGACCCACATAAAAATTGTCAG
CAAGAAAGACAGTATTTACAGATCTACCGGAGATGACCAACAATTCTTTA
GATGTACCGCTGAAACAGCAGGCTCATCAAACCATTTGGTCCAGGAGAAG
TTTCCAAACAAGAATGTGCAGCTTGTCTTTTACCTTTCACACGTAAGTGA
CCTTGTGACCTTAAATATTCCCAACGACCGCTTCAGAATCATTCCGGAAC
CCTAAGCCAACAACAATCACCCCTGAGCCAACATTGACACAGAACCCTAC
CGATAACAATGACTCAAGAACCGGCCACAACTACGACAAAAATCTCATGT
AAGCTTTTTAAAATATTACATAACACCATGAACATATAAACGATTGGACG
TCTCTTCTATTGTCTCTTTGAAGCGAGCTTCGTTGCCGTCTGTATTTCAA
AATTGGTATAAAAAATCCAACAATATTCCGTCACAATTTTATTTCTTTGA
ATTAGGTAGAAAGATAAATACGTAAAAGAATTTGTAGAGCTTGAACATTA
CTCGTAATTCACAAGAGAATTATTCTAAATTTTTTTTATAAGTGGCCAAT
GTATTTTATCAACATTTTTCAATGCTGAAATGCAGAATTTAAACTGCGTG
TGTACTTTTTAATCACTTTTGTCAGTCCTATCATTTTTTTGAAAAAGAAT
AGTATGCCAAAGTTAAGAGCCTGTGTCATATGAATATCATAGTTTAAACC
CCATACTCTTGAGTCAAAATTTGGAAATATTAGTCAGACTTTGCACAAGC
TGAAATGATTTTGCCTTTGTCATTTTTTTTGTTATGATATAGATAAAAGA
CTTGAGAAAAATAGAACTAAAGTCTGTCCAGATATAATTGGCAGTGGAAA
CAAGAATGCCTGTAACTTTTGATAGTCAAATATAATTATGGAAATTTTTT
TTGCTTGTTTTAGAGAATGAAAAGCGCTATATTTGAGTGTATTTTTGGTT
GAAAAATTCGCGATTTTTAGCGGTTAAATTTGCGATTGTAAAAATTGAGC
TTTTTTTCTACGTGTGCTATAACGTTCATTTTTACACCAGTGGTAGTTCA
ACCTTAGGTTAAGAAGTTTATTAAATTTCAAGGCGAACAGAAAAGTCCTT
CGGAAGATATGAGACCCGAAATACCCCTTGGTAGCACTTTTCTTTGAAAT
ATCAAATCTCCAACTTATTACTAAAAACGGGGGTTATGTTATCTTTTTTG
AACAGTGCAATTAAACGGTTATAAGATTTGATTTTAATAATACAACCACT
GACTTTATAAACCCTGGACGATTGGAAATTTTGAAATGGCTACTGGCAAA
GAAGTATTTGTAGTGTTAAAGATTTGCCTAATGACACTGTGCTGCATTGC
TAGTGTACAAGCAAAACAGATCTAACCAGGGGGAACTAATTTCATAGAAA
CTCCGTTCAAAACATTTTTCTTGATCGTTATTGAGAAACTGCCTCCATGG
TCTATATGAAGCTCAATGAATTCAAAGATATATCTTTTCAGGTCCTGACG
ACTTATCTGGTGACAAAGAAGACAGTCGATATGCTCATCCCGCTGATAAT
AAACAATTCATAACTTGTACAAACAAAATCAGAGTTGGGTTATGTTTAAG
TTATCCAGTTACACTTGTCTTATCAATGAATGTGGACTTGGTAGTTGAAG
GAACAAGTAAGTATTTAGTTATATTAAATTAATTAAAGAATATTTAATAA
TGAAATTTACCGAAACATTAAGAATACATTAGAAATATCACCATTAAAGA
ATTAGGCAACCAAACTTAAGACTGTCCTTTTTAGAGCATTTTCAGAAACC
CATGAAAATATGATGATTTTCTGAAGACCCATGAACTATGAATTTTGCAC
TCTTGAAACCCTTAGAATTTAGAAACCTCAAAGGTATTTTTTCTTTAAGA
ACTTTTTTAATGCAAAATTTTATCCCACTTTGTGGTAATAAATATAAAAA
GAGCCTAAAAGTCAAATGAATAAATTGAAGCTATAAAGAAGTCTAGAGTA
ACTCGATCGTTCTAGACAGTGGCGTGGTGTTAGGAGAAGGGTCAGGGTTG
CACAGGCCCCCAGTAGAGCTACTTCAAGAGGGACGCCAAAATATTAAAAT
GATTTAAACCCAATTTATACAGCTCTCAAAGTCTGTTACCAACTTTTCTC
GGGATTAGCTCATTAGTTCTTTCTGATTTTTGCGCTCAGTGATGGGAAAT
GGTGGTTCCCAAAAACTGACAGTCTGATTTTCGAGGAAAAAAATTTTTGG
GGCAAAGTTTGACAAAAAAGTGCCTAAAAATAGGGGTTTTTGGACATAAA
ATTGAATCAGTAAATTTTTCTCTTTTTTGCATGAAAAAATCTTAAGCTGT
ACATTTTTTGATAGTGTACACAATTAATTTTGTATCAAAATTATTACATT
TTCACACATTTGCAACCTTTATTTCTTGCGTCCATTATCCAAGAAAAGAA
CAAAAAATGTGAAAATCAATCTACTTTGACTTTCTCAAATCTCTTTTCTA
GATTCTGACTTAAACTATGTTTCGTTAATGGAATTTGTTATATGCCCGTA
GATGTTCATCAGGAAACCTTGGACAATGAGTAAGTGTCTGCGTGTACTTA
TGTTTTCATTTTTAGAATAAATCCAGGACAAAACCAAAATTGGTTATACA
CAAATCAAATTCTGAATATTGAAAAATTAGTTCCCTTTGGTCGGAGGAAA
TGGTTCTAGGGCTACCTCAAAAAAATAATCATTTATACCAACTTTCTTAT
CCGATAATATCTTTGGATTGCAGCCAATAGTCTTTGGATTGCAGTCAATA
GTCTTTGAATTGCAGTCAATCGTTTTTGAATTGCAGTCAATCGTCTTTGA
ATGAAAATCGAATTCAAAAGAGTCTAGGGACTCGAGGGTTTTCAGATCAT
CCGCTCCGCTATCTATGTCTTTATGACTCTCTCTTAGTACAATGTCCTGT
CTCAGTTTTATATTAAATCCAGACTTTTTATTTGTCTCTGTTAGGTAATG
CATACATTTCCCATTGATGGTTCGAAATTTTAAAAATGTGGACAAATAAT
TGATGGGATTGACATGATGAAATTGATTTAATGTCAAGAGAACCTGGTTG
GGTAACTATATTTCTAACTTGTACAATTTTTTTTGCAAAGTTCATCCAAC
GTTCACGGCGTGTATTTTATGCTAGATGAGGACTAAAGTTTGCTACTGTA
TCCTGATTTTGCTCATGTTTATTATGCATGTGAGTCTTTCTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005444XLOC_005444Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009732-exon-sc0000098-1575043694:162431..162566TCONS_00009732-exon-sc0000098-1575043694:162431..162566Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1575043694:157469..157786TCONS_00009732-exon-sc0000098-1575043694:157469..157786Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1575043694:156111..156275TCONS_00009732-exon-sc0000098-1575043694:156111..156275Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1575043694:155188..155265TCONS_00009732-exon-sc0000098-1575043694:155188..155265Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1575043694:154522..154772TCONS_00009732-exon-sc0000098-1575043694:154522..154772Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1510915933:162431..162566TCONS_00009732-exon-sc0000098-1510915933:162431..162566Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1510915933:157469..157786TCONS_00009732-exon-sc0000098-1510915933:157469..157786Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1510915933:156111..156275TCONS_00009732-exon-sc0000098-1510915933:156111..156275Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1510915933:155188..155265TCONS_00009732-exon-sc0000098-1510915933:155188..155265Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1510915933:154522..154772TCONS_00009732-exon-sc0000098-1510915933:154522..154772Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1491911889:162431..162566TCONS_00009732-exon-sc0000098-1491911889:162431..162566Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1491911889:157469..157786TCONS_00009732-exon-sc0000098-1491911889:157469..157786Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1491911889:156111..156275TCONS_00009732-exon-sc0000098-1491911889:156111..156275Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1491911889:155188..155265TCONS_00009732-exon-sc0000098-1491911889:155188..155265Clytia hemisphaericaexon
TCONS_00009732-exon-sc0000098-1491911889:154522..154772TCONS_00009732-exon-sc0000098-1491911889:154522..154772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:154522..162566 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.64186	3.08427	5.35613	4.9827	9.44552	4.55318	1.78993	2.08019	0.306449	0.490864	0.340468	0.152645	0.0319285	0.198948	0.0545208	0.263291	0.46851	0.147756	0.0510333	0.106805	0.232083	0.0679212	2.91737	2.08526	0.360807	0.598021	0.329141	0.351268	1.17227	2.60587
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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