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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009642 ID=TCONS_00009642|Name=TCONS_00009642|organism=Clytia hemisphaerica|type=transcript|length=2924bpRun BLAST on NCBI protein sequence of TCONS_00009642-protein >TCONS_00009642-protein ID=TCONS_00009642-protein|Name=TCONS_00009642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=869bp MAQTRRRKTRSSARNAARGQESTEQENSASQSEESQESQGSQESQEFQLSRun BLAST on NCBI transcript from alignment at sc0000097:485021..497255- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009642 ID=TCONS_00009642|Name=TCONS_00009642|organism=Clytia hemisphaerica|type=transcript|length=12235bp|location=Sequence derived from alignment at sc0000097:485021..497255- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000097:485021..497255- >TCONS_00009642 ID=TCONS_00009642|Name=TCONS_00009642|organism=Clytia hemisphaerica|type=CDS|length=41760bp|location=Sequence derived from alignment at sc0000097:485021..497255- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009642 vs. Swiss-Prot (Human)
Match: SF3B2 (Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2) HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0 Identity = 309/507 (60.95%), Postives = 384/507 (75.74%), Query Frame = 3
Query: 1215 DFEVEYVSEKIDLPQWDPNYAAFQSIFETFKLEEKAVIXXXXXXXXXXXXXPIINPSAV----XXXXXXXXXXXXXXXXXXXXXXMSKKQLKKQSRMEVATLKQMVTRPDVVEMHDVNSKDPQILVYLKAYKNTVPVPRHWCFKRKYLAGKRGFLKNPFELPEFIKQTGIMEMRAAMQEKEDAKTLKSKQRGKIRPKLGKIDIDYQKLHDAFFKFQTKPKMTIHGDLYYEGKEFEVKLKEKKPGDLTDDLRTALGMPVGPGKELIPPPWLIAMQRYGPPPSYPNLKIAGLNAPIPEGSSFGYHAGGWGKPPVDEMGKPLYGDVFGTMNEDPNAGAETEDTIDRTPWG----XXXXXXXXXXXXXXXXXXXXQTGLITPGDAGLVTPSGMSSVGAGLETPDMIELRKRKEIEDAMETGGDTPALYTVLNEKKT-NVGASMMGSQHTYDLAP--SKKAG----DGVEITLDPSELELEPSAMAAKYDDTMKEREANVNREDFSDMVAEH 2690
D E+EYV+E+ ++ ++PN+ F+ IFE FKL + + E +K++ + P + D DDD D E+EKK E K+SKK+L++ +R VA LKQ+V RPDVVEMHDV ++DP++LV+LKA +N+VPVPRHWCFKRKYL GKRG K PFELP+FIK+TGI EMR A+QEKE+ KT+KSK R K+RPK+GKIDIDYQKLHDAFFK+QTKPK+TIHGDLYYEGKEFE +LKEKKPGDL+D+LR +LGMPVGP +PPPWLIAMQRYGPPPSYPNLKI GLN+PIPE SFGYHAGGWGKPPVDE GKPLYGDVFGT + E E+ IDRTPWG E SE E E E +++ D+TG ITP D+GL+TP G SSV AG+ETP++IELRK+K IE+AM+ G +TP L+TVL EK+T VG +MMGS H YD++ S+K GVE+ L P ELEL+P AM KY++ ++E++A V +EDFSDMVAEH
Sbjct: 366 DVEIEYVTEEPEI--YEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPKKKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTE-EEEIDRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKK-IEEAMD-GSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEH 867 The following BLAST results are available for this feature:
BLAST of TCONS_00009642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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