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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009589 ID=TCONS_00009589|Name=TCONS_00009589|organism=Clytia hemisphaerica|type=transcript|length=2522bp
GTAAATCTGATCCAAGTTTTGAAAGCGAAAGAGATAATCAATTTCTAATT
GTAAGATTGTTGTTGGTGATGTAGGTTGTAAAGAGGAATCATAATTATAT
CAAAAAAATGGACTGGACATTGTTCTCGAAGATTATTGGAGCAATCCTTt
tgtttgtgtttacctttttgtTCACAATATTACcttataaattgaaaaaa
atccgtcaaaacaaattgaaaagTATCTCATGTTTTTGTGGTGGGctttt
ccttgGCCTCAGTTTCCTACATCTAATACCCGAGACTCTCCATGGTATCC
ATGACAACGAATCCCTAATGAAAATACAGAAGGTGTATCCATTTGGTGAA
CTGGTTGTCATCTTGGGCATGATTCTGGTACTGGCCACTGAGAAGTTCGC
AGGAATGATCCAAATTAACCGCAAAACCACCAAAGTGAAATGTGATGCTA
GCGAGAATTGCTGCCAAGAAGAATGCACTATACAGGGGCTGGGTATGGAG
GATAGAAAAACACCATTGTTCAAGAAATTGGAGAAGCCGTACGTCGAAAG
AGAAGTAACACCTTCGGAGTCTTCAAGCAGTGAACAAGGTGAAATTGAAC
AAGACACGAAAGAAAAGATCGAGGAAGAACACTTGTCATCAAACGAAAAA
GATGTCATTTTCTCACATAATGGACAAAACGGTAACGGCCACAGAGTATC
GCTCACTGCCAGCACCATAGAGAGTAAAAATGAGCTTCGTTTATTAAAAA
TTCGAACAATTTGTTTAGTGATAGCACTTATGGTTCATTCGCTATTCGAA
GGTTTAACGGTTGGTCTTCATGACAACGCTTCGAATGTTTGGATTTTGTT
AGCGTTGTTAATGTTCCATAAATCGTTAGTTGGATTCTCATTGGGTATTG
CTTTGGTCAATGATAAAAGTGATCTGAGATCCTTCCAAAAGAAAGCTggt
CTATTCGCCATTGCTTCGCCGATCGGAGCTATCATTGGTGTCATCATTTT
TAGTGCCAAATCAAGTTTTATAGGTGACGAAGTGGTTATTATTCTCACAG
GGCTTTCCACTGGAACTTTTGTTTACGTGACCTTCTTTGAAATCCTTGGC
AAATGCCTGGAAGGAGATAAGATGGAAGACATGATTGGATTTGGTTGTTT
TTTGTTAGGCTTTGGTATGTTTGCTGGAATCACTGCAGTACCACAATTCC
AACATTAATGGTATGAatgctattcatgatatgcaccattgtaatTTCTT
CAACGGactcaacagctgattggttgtaattgacgtattaactgatttta
cgtcacttacaacccaatcagctgttgggaccatgatgtaatgtccagaa
gacattgcaatagtGCACCATCGATCCGGTGGCACTTAGACATTTCACGT
CATTTTAACACCTATCAAACTCAAACTCAGTCCCCCAAGGTATTTCACGG
TTGAAATAATCTACgagtaatcaggactgattgagCTCTTATAACAACTT
CCTATTGGTCAGGAATTATCTtcgtaatctcatggttgatttaaattcga
ttgacgtttatgcttacgttaatttgtaatttcccgcgaacttgtaattt
ccctcctagattttgtaatttcccgcaaaatgaaattttcatcgtttgca
aattcatcacctttttcgactttcttactaactttaaaggcttaattaag
taaatggaatactatccaattaaaactcgattcgcgtttctatgactttt
ttgagacctctttaaattttcagattgatttccagtgttaaaattgacgt
ctttcagaattgttagaatttcaatccaaaccatgagattaacctagaat
cccatgcttgttttcgtgaaattctggataaattaccctcggtcaaattt
ctcgttgcactcgggaaatttcaaaaaatttcaaaattgacctcgggaaa
tttatcccgaatttcccttataaccatgagattactagtacgaATGTTTG
ACCAATCCCTATGGTCATGCGACGTCTTATGGACATTCAATGGACGGCTT
TAAGACCTTTGGATAtcctagaaacgtacattagacgtccaaaagGCATT
TGTGTCCATTGAGATAGGGTTATCCCATAACTCCTGATTACCGTAATTTC
ATTTCGACCGTAAAATGCAGCTATTGGCACGAGTTGAAAGGTTGATTTTC
TGGAATGAGTTTTTGCAGTAGACTGAATTCCGATGGTtctaactataaac
cctcgaatgtgacagagcccgattttcaaaaaaaaaaaatttggggcaaa
tttgggccaaaaaacggctaaaaacgggttttttgggctttgtgaaaaat
taggtcgttaattttttctgattttttgcatgaaagtagggtaccatcgt
aggtaaaagatggtttaagcagatttttgcaaaaatattttgttggctca
aaaaacgcatgtttatctataagaatcactattaataagcatacatcaat
gttcttagtcaaattactcaat Run BLAST on NCBI transcript from alignment at sc0000097:404529..411078+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009589 ID=TCONS_00009589|Name=TCONS_00009589|organism=Clytia hemisphaerica|type=transcript|length=6550bp|location=Sequence derived from alignment at sc0000097:404529..411078+ (Clytia hemisphaerica)
GTAAATCTGATCCAAGTTTTGAAAGCGAAAGAGATAATCAATTTCTAATT
GTAAGATTGTTGTTGGTGATGTAGGTTGTAAAGAGGAATCATAATTATAT
CAAAAAAATGGACTGGACATTGTTCTCGAAGATTATTGGAGCAATCCTTt
tgtttgtgtttacctttttgtTCACAATATTACcttataaattgaaaaaa
atccgtcaaaacaaattgaaaagTATCTCATGTTTTTGTGGTGGGGTAAG
TGCCTTTTTaactctagtttagacggcccactttttgccctgcctattct
aactGTGAATTGGAGTTGGCAgaaagttggctgtctaaagtcaatgcatt
gccctcttttgacgtcaatgccatgtcttctttcaatctttttcaagcaa
agttTTTAACTGCCAATATAGTGCCTACtttttgcctactctaacaatta
gaataggcagggcagaaagtcggccgtttaaactagagcttaattttttt
actttgtacaacgaagtttttttaactcgaacttctttaactcaaacaag
ttttcCCGTCCCTTCAATTAACAATACTTTATAAagcttactccataact
cgagatTTTCTTAACTTAACAAATTTGTGTTACCTGTACGTGCtcaagtt
atggagactctgctttaatatttttgacaccTTTGTTACCTAGAGTTACC
GACGGACAGAATGTTCagatttttgaccatttttgcgTCCCCACAATACA
GCCTACAGCTGGTGATTTTCCGGGAAAATTCAGATTGTTAACACAAATTT
ggtagtacacgtttttttttataagaacaaactatataagaacataaggc
ttcgaggcccaaaaatctaagaacattctaagaacatactaaggctttgg
agacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcggg
gggggggggggcaggggGTCATGgccccccaatattttgcaaagtatttt
tttttactttaaaaaatcccGTTTAGAGGGATGAAATAAGtgtgaaaagt
cgaaaattttaattcatcgcccaaccatggtgagcgacatattttttggc
cccctcaattcaATTAGCACGCCGGGGACCATGCCAGAGTTAAATATTTA
TACTAAATCAAGTTTTATTCCTTCATCCaaattccagcttttccttgGCC
TCAGTTTCCTACATCTAATACCCGAGACTCTCCATGGTATCCATGACAAC
GAATCCCTAATGAAAATACAGAAGGTGTATCCATTTGGTGAACTGGTTGT
CATCTTGGGCATGATTCTGGTACTGGCCACTGAGAAGTTCGCAGGAATGA
TCCAAATTAACCGCAAAACCACCAAAGTGAAATGTGATGCTAGCGAGAAT
TGCTGCCAAGAAGAATGCACTATACAGGGGCTGGGTATGGGTATGCATAT
GTATTAGTTGTAGTATTAGGGTTAAGGGTGTGGTATAGTTCAAGATAATG
AGAGGTATCTAAAAGGGGTTGAAAGGTCAAGTCAAGGTCCGAGGACCTGG
GCGCCAATTGGGCTTAGTcacatttcttaaaaaaaaaagacatttttgga
catttttaaGTACCTTCAAATACACAACAGTAAGCTGCTTATGGCAACCa
gtgaatgggcttttccagaaataatctgtgcccccctgttgagggtatcg
gatatccagggggttaacgatttttgttcaaaagtggatattcagggggt
taaatatctacaaagggagcggatatccagggggtaaagtgtcttttcaa
gtaagaagtacgatatccaggggtaagcatatttttaagagtgaatatcc
agggggtctttactaataaagtaggatatccagggggttcgatacttcga
aaaatcaatatcctcaacagtgggggtaaaaaaattttctggaaaagacC
AATGATattcgggacaagctggagtttttacaagctcttatttgatttgg
ttggtcgttaagatgtaataaaataatcttattactttttctaaagaacg
cgtcatctctatcactttaaataaccaattagtgaagtatcttgtaaaaa
ctccagctcatccctgatATTCGGCCCCTTTTTCAGCATAACAATAAATC
TGCACACttgataccttatcggggaaaaaaatttgggggaaagtgacgaa
aatttcccgacattttatcacccgaccaaaacttgtaccacattttttta
tccccgaccaaaacatttacccgaaattttataccgcaaccaaaattcaa
atctaattttcttacacctttatttaccgaaattagtgctttaaaNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNgaaaccatttcttttggacagtttagtcgggtgaaag
tgacgaatttgaaatttttgttggggaaaagtgacgaatttgaaattttg
gtggggggaaagtgacgaaaatgcctctaggtgacgaaatttgttcccga
tgaaaaaaaaaaccgactaaataaaactccgacattttttttccCGATAA
GGTAATTCATTATTTTATCGTCATTCTTTTCCCACAGAGGATAGAAAAAC
ACCATTGTTCAAGAAATTGGAGAAGCCGTACGTCGAAAGAGAAGTAACAC
CTTCGGAGTCTTCAAGCAGTGAACAAGGTGAAATTGAACAAGACACGAAA
GAAAAGATCGAGGAAGAACACTTGTCATCAAACGAAAAAGATGTCATTTT
CTCACATAATGGACAAAACGGTAACGGCCACAGAGTATCGCTCACTGCCA
GCACCATAGAGAGTAAAAATGAGCTTCGTTTATTAAAAATTCGAACAATT
TGTTTAGTGATAGCACTTATGGTTCATTCGCTATTCGAAGGTTTAACGGT
TGGTCTTCATGACAACGCTTCGAATGTTTGGATTTTGTTAGCGTTGTTAA
TGTTCCATAAATCGTTAGTTGGATTCTCATTGGGTATTGCTTTGGTCAAT
GATAAAAGTGATCTGAGATCCTTCCAAAAGAAAGCTGTAAGTAcatgttt
ctttataagaaccaagTAAAATTTGGGTGAGGCTCGTCTGTtcttttttg
gtgattttaaaGACAGGTCTCCACTtgcgatcgcaccttttggcttcaat
cctttttgcttggaaaaaagattacgtcataaaaatgtagctaAATGTGa
ctacatttcaactttttttaaaccgttacgtcagatcgcaccaatggaat
tgtttcatttttcttttggccaacagcgtggaagctttgctcgaaaaagt
gcgatcgcagcgtgcgcaagtggagaccggccttaagactggaatgttct
caaaatgttcttgatATGCTTGCTTTACTCcctttttgattgaaaaaggg
GATTTAAAATTACCGAATGTTATTGCTCTTTCAAtgacaccacggctggt
tttaattaacccgaaatttctcaattcgtgttaattacaCGTCTCaatat
tcatgtaataaggtagcATTTTCCTAGTTAGCTCTGAAATCtgaaattct
tcatttttcagaatatatacaccttttcgaccgtagcctccaattgccgc
gcgggcatttttttgtctgttttaccaccctaaaaaccgtcccagtcttt
ttttcgcacctatagacaatagaaaaaggtgtaaaaaaaggtttggatcg
agtttaggggtgataattaaataataaagtggcaccgCCTGACCGCTCGA
TTACggccgaaaaggtgtattgaccCATATGAAAATATCCTTGATAGTTG
AtcgaatgtctttttttatttttagggtCTATTCGCCATTGCTTCGCCGA
TCGGAGCTATCATTGGTGTCATCATTTTTAGTGCCAAATCAAGTTTTATA
GGTGACGAAGTGGTTATTATTCTCACAGGGCTTTCCACTGGAACTTTTGT
TTACGTGACCTTCTTTGAAATCCTTGGCAAATGCCTGGAAGGAGATAAGA
TGGAAGACATGATTGGATTTGGTTGTTTTTTGTTAGGCTTTGGTATGTTT
GCTGGAATCACTGCAGTACCACAATTCCAACATTAATGGTATGAatgcta
ttcatgatatgcaccattgtaatTTCTTCAACGGactcaacagctgattg
gttgtaattgacgtattaactgattttacgtcacttacaacccaatcagc
tgttgggaccatgatgtaatgtccagaagacattgcaatagtGCACCATC
GATCCGGTGGCACTTAGACATTTCACGTCATTTTAACACCTATCAAACTC
AAACTCAGTCCCCCAAGGTATTTCACGGTTGAAATAATCTACgagtaatc
aggactgattgagCTCTTATAACAACTTCCTATTGGTCAGGAATTATCTt
cgtaatctcatggttgatttaaattcgattgacgtttatgcttacgttaa
tttgtaatttcccgcgaacttgtaatttccctcctagattttgtaatttc
ccgcaaaatgaaattttcatcgtttgcaaattcatcacctttttcgactt
tcttactaactttaaaggcttaattaagtaaatggaatactatccaatta
aaactcgattcgcgtttctatgacttttttgagacctctttaaattttca
gattgatttccagtgttaaaattgacgtctttcagaattgttagaatttc
aatccaaaccatgagattaacctagaatcccatgcttgttttcgtgaaat
tctggataaattaccctcggtcaaatttctcgttgcactcgggaaatttc
aaaaaatttcaaaattgacctcgggaaatttatcccgaatttcccttata
accatgagattactagtacgaATGTTTGACCAATCCCTATGGTCATGCGA
CGTCTTATGGACATTCAATGGACGGCTTTAAGACCTTTGGATAtcctaga
aacgtacattagacgtccaaaagGCATTTGTGTCCATTGAGATAGGGTTA
TCCCATAACTCCTGATTACCGTAATTTCATTTCGACCGTAAAATGCAGCT
ATTGGCACGAGTTGAAAGGTTGATTTTCTGGAATGAGTTTTTGCAGTAGA
CTGAATTCCGATGGTtctaactataaaccctcgaatgtgacagagcccga
ttttcaaaaaaaaaaaatttggggcaaatttgggccaaaaaacggctaaa
aacgggttttttgggctttgtgaaaaattaggtcgttaattttttctgat
tttttgcatgaaagtagggtaccatcgtaggtaaaagatggtttaagcag
atttttgcaaaaatattttgttggctcaaaaaacgcatgtttatctataa
gaatcactattaataagcatacatcaatgttcttagtcaaattactcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009589-exon-sc0000097-1491911889:404529..404773 | TCONS_00009589-exon-sc0000097-1491911889:404529..404773 | Clytia hemisphaerica | exon |
| TCONS_00009589-exon-sc0000097-1510915933:404529..404773 | TCONS_00009589-exon-sc0000097-1510915933:404529..404773 | Clytia hemisphaerica | exon |
| TCONS_00009589-exon-sc0000097-1575043694:404529..404773 | TCONS_00009589-exon-sc0000097-1575043694:404529..404773 | Clytia hemisphaerica | exon |
| TCONS_00009589-exon-sc0000097-1491911889:406416..406668 | TCONS_00009589-exon-sc0000097-1491911889:406416..406668 | Clytia hemisphaerica | exon |
| TCONS_00009589-exon-sc0000097-1510915933:406416..406668 | TCONS_00009589-exon-sc0000097-1510915933:406416..406668 | Clytia hemisphaerica | exon |
| TCONS_00009589-exon-sc0000097-1575043694:406416..406668 | TCONS_00009589-exon-sc0000097-1575043694:406416..406668 | Clytia hemisphaerica | exon |
| TCONS_00009589-exon-sc0000097-1491911889:408266..408714 | TCONS_00009589-exon-sc0000097-1491911889:408266..408714 | Clytia hemisphaerica | exon |
| TCONS_00009589-exon-sc0000097-1510915933:408266..408714 | TCONS_00009589-exon-sc0000097-1510915933:408266..408714 | Clytia hemisphaerica | exon |
| TCONS_00009589-exon-sc0000097-1575043694:408266..408714 | TCONS_00009589-exon-sc0000097-1575043694:408266..408714 | Clytia hemisphaerica | exon |
| TCONS_00009589-exon-sc0000097-1491911889:409504..411078 | TCONS_00009589-exon-sc0000097-1491911889:409504..411078 | Clytia hemisphaerica | exon |
| TCONS_00009589-exon-sc0000097-1510915933:409504..411078 | TCONS_00009589-exon-sc0000097-1510915933:409504..411078 | Clytia hemisphaerica | exon |
| TCONS_00009589-exon-sc0000097-1575043694:409504..411078 | TCONS_00009589-exon-sc0000097-1575043694:409504..411078 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:404529..411078 + |
Blast
The following BLAST results are available for this feature:
|
