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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009496 ID=TCONS_00009496|Name=TCONS_00009496|organism=Clytia hemisphaerica|type=transcript|length=1391bp
aagaggaatgcggaaaattaataacataaACCTATTTTAAGTGCGTTAAG
AGCGAAAGCAACAAATCACCAAACATTTCGAAGATTGAGGTCAAGTCTGG
ATACGTACGTCGAAGAAGTCACAGTGGAATCATGGAAATCGCGATATAag
aattattatttttgtattatcaatggtcGGTTGATGGCTGAGCGCGACAG
TTGATCTACTATAGAAATGCTTCCAATGAGCAAATTTTATGTTTCCAATG
AGCAAATACAGCATATTGTGAAAATCGGATGAAATGATAATGATACATTG
CGCATATTACGCAGTACCGATGTTGGTGATTNGTCAGAAAACTTACATAA
GAATGGACGGGGTGGTGGGATGACCTTAATTGCATATTTCCAACAGAGTT
AAGCTTCAATCCTTAATtacaaagttcattttttcaagaatcaAACATGT
ACTGATATCATATTAACAGATTTTCGATAACATCATTGCTTTAAAGAGTA
TTCCTAGTTTACTCAGTCAACCACAAAAAAAATCCTTTGATCAATTCAGA
CTGTTCATAAAGAAGCACCTATGACAACATAAGCAACCGTATCTGAATCG
TAAGCTAATTTTCTGGtgattaatttttaagttagaTAGAATTTGCTATA
GGAGAAAAGGGGTACTATACCCTTTTATTGAGAtaattttgtttactttc
tgCAATTCTAACCACTCAAACTAATCACCAGAAAGTTGAGATCATCCACC
ACCCcagtttccaaccccccctgTCCCGCCGGGAATCGCCTCTGGCGGGT
ATTCTAAGCTAGCAAAGTCAGCGATAATTTGATTCCATCATGGTCGGATA
AGTTCACACATTTACGAATAACTTCAATACCATACTGGTGCATNTTCAAC
GTTTCATTAATTTTCCTCATGATATCAACCAAAATGCATACATATATAGA
TGAATCAATTCACTTGCAATGCACttccatattttttcattccataTTTT
CCCATATTGTCTATTTTTTTAACTCTGTGacagtctttttgatttttgag
taggcaaatgaataacaaatagaatacaagaaaataataaaacaattaac
aaaagcttattaaaaaaatggtagaaatattacttagttttgaatataat
aatttaaaaaaatcttataattatgaaaaacagaagaaaaatgataaata
taaaaaataggaataaataatataaaaaataggaataaataatataaaaa
taggaataaataatacaataaataaaataatacattaAATGTCATATCCA
TAGGTATGTAAGTTTCCTGACGAGATAgtaatcaaaaattgattaatgaA
AGGCATCTTTAAACTAATTGTCCTTTGTCTATAGATTTTTT Run BLAST on NCBI transcript from alignment at sc0000095:567176..569022+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009496 ID=TCONS_00009496|Name=TCONS_00009496|organism=Clytia hemisphaerica|type=transcript|length=1847bp|location=Sequence derived from alignment at sc0000095:567176..569022+ (Clytia hemisphaerica)
aagaggaatgcggaaaattaataacataaACCTATTTTAAGTGCGTTAAG
AGCGAAAGGTAAGGTAACATTTTACGtcatttccggtcgaaaatatcCAA
TATTTTGAATTCAACAAGACAAAATTCAAGATTCCAAGCAATTTgtagaa
aagttttctttcattcTAGCCGAAAATCTgctttcattttttaatgaaca
gGAAAATACAGGTTAGTAAAGGGGCAAAAAGGGGCAAAAAGGGGTAACTT
GAGTCTCGATCTTgttaatttaaaaattatatttccaagTATTTGTAATT
CGGAAATTGCGATAGTTCATAGTTCATAGAAAATAGCTAGCAATTTATAA
GACTACAAGTACTATTGtgcaaatttggctttttttcacatccggtggat
ttccggcttccaaaataataaaaattagtttttagtgTTTCGTTTACATA
TGTCACATTTCGAGTAATCAAACCATACAAAGTTTACATACCAAATCGTC
TTTTTATCCAACAGCAACAAATCACCAAACATTTCGAAGATTGAGGTCAA
GTCTGGATACGTACGTCGAAGAAGTCACAGTGGAATCATGGAAATCGCGA
TATAagaattattatttttgtattatcaatggtcGGTTGATGGCTGAGCG
CGACAGTTGATCTACTATAGAAATGCTTCCAATGAGCAAATTTTATGTTT
CCAATGAGCAAATACAGCATATTGTGAAAATCGGATGAAATGATAATGAT
ACATTGCGCATATTACGCAGTACCGATGTTGGTGATTNGTCAGAAAACTT
ACATAAGAATGGACGGGGTGGTGGGATGACCTTAATTGCATATTTCCAAC
AGAGTTAAGCTTCAATCCTTAATtacaaagttcattttttcaagaatcaA
ACATGTACTGATATCATATTAACAGATTTTCGATAACATCATTGCTTTAA
AGAGTATTCCTAGTTTACTCAGTCAACCACAAAAAAAATCCTTTGATCAA
TTCAGACTGTTCATAAAGAAGCACCTATGACAACATAAGCAACCGTATCT
GAATCGTAAGCTAATTTTCTGGtgattaatttttaagttagaTAGAATTT
GCTATAGGAGAAAAGGGGTACTATACCCTTTTATTGAGAtaattttgttt
actttctgCAATTCTAACCACTCAAACTAATCACCAGAAAGTTGAGATCA
TCCACCACCCcagtttccaaccccccctgTCCCGCCGGGAATCGCCTCTG
GCGGGTATTCTAAGCTAGCAAAGTCAGCGATAATTTGATTCCATCATGGT
CGGATAAGTTCACACATTTACGAATAACTTCAATACCATACTGGTGCATN
TTCAACGTTTCATTAATTTTCCTCATGATATCAACCAAAATGCATACATA
TATAGATGAATCAATTCACTTGCAATGCACttccatattttttcattcca
taTTTTCCCATATTGTCTATTTTTTTAACTCTGTGacagtctttttgatt
tttgagtaggcaaatgaataacaaatagaatacaagaaaataataaaaca
attaacaaaagcttattaaaaaaatggtagaaatattacttagttttgaa
tataataatttaaaaaaatcttataattatgaaaaacagaagaaaaatga
taaatataaaaaataggaataaataatataaaaaataggaataaataata
taaaaataggaataaataatacaataaataaaataatacattaAATGTCA
TATCCATAGGTATGTAAGTTTCCTGACGAGATAgtaatcaaaaattgatt
aatgaAAGGCATCTTTAAACTAATTGTCCTTTGTCTATAGATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009496-exon-sc0000095-1491911889:567176..567233 | TCONS_00009496-exon-sc0000095-1491911889:567176..567233 | Clytia hemisphaerica | exon |
| TCONS_00009496-exon-sc0000095-1510915933:567176..567233 | TCONS_00009496-exon-sc0000095-1510915933:567176..567233 | Clytia hemisphaerica | exon |
| TCONS_00009496-exon-sc0000095-1575043694:567176..567233 | TCONS_00009496-exon-sc0000095-1575043694:567176..567233 | Clytia hemisphaerica | exon |
| TCONS_00009496-exon-sc0000095-1491911889:567690..569022 | TCONS_00009496-exon-sc0000095-1491911889:567690..569022 | Clytia hemisphaerica | exon |
| TCONS_00009496-exon-sc0000095-1510915933:567690..569022 | TCONS_00009496-exon-sc0000095-1510915933:567690..569022 | Clytia hemisphaerica | exon |
| TCONS_00009496-exon-sc0000095-1575043694:567690..569022 | TCONS_00009496-exon-sc0000095-1575043694:567690..569022 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095 | supercontig | sc0000095:567176..569022 + |
Blast
The following BLAST results are available for this feature:
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