TCONS_00009069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009069
Unique NameTCONS_00009069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009069 ID=TCONS_00009069|Name=TCONS_00009069|organism=Clytia hemisphaerica|type=transcript|length=1391bp
TGCTGGTTCTTTCCATTCTTGTAGGGTAATTGACACGAAAATTTGCCCAG
GTCAACGCCTATATAAAGTGTCCATTCACTTTTGTGTCTCATAGGATCGG
CCGTATCTTGGCGGGCTTGAATGGAGAAACGAAcactgaaaattttaaga
agaaagaagaaaagaagaaaagatcagaaattgtattttttttgcattgt
tttttaatttttttttcagttgaaattgtttttaacGAAGATTCGGTTTT
ATAACAAATTACTTAGCAATTCGTCTTTGCTGTTTAGCTAAAAACTTTTC
ACATACTGCCATCGAATCAGGCGTTTTGTCAAGATGAACATTCATTAGAC
AGAGGCCATTTAACCTATCCTGGCCCATTGTACTACGTAATTTACTCTTA
ATTAATTTCATATCAGAAAAGGACCTTTCACACTCACAAGTAGTCACAGG
AATAGTAGCTAAAATTCTGAGAGCTCTTTCGATATTATCAAACTTTGCAT
GCTTGATAGCATTTAATGTTTCAGAAATAGTAGTGGGAAATCAGCCCAAA
AGGTCCCATATGCTTTAATTTCCTCATTAATTCGTAGTGGAGAAACCATA
TCGTGAgagtaaaaacgaaaaaaaggtCCGAGTTTGACAGCCACATCTTC
CTCGGACAAAAAAGATTTGGGCAAAAGATATAAACCTTTGTATGCAAGCA
AAGAATGCTCAGAAAAACGACCAATGAACTCCGAGTAAAAAGTATCTAAA
AGAGGTACAGTCAGAGAAACTCTATAGTAATCAGATACAGTTTCGGCAGG
ATGATTATCACGAAAAATCTGCCTCTTTTTGTCCTAGGTTTTGAGACATT
GATATTTAGCCTATTAGCTATATCCACGGCAAATTGAAACCATTCATCAT
GCTCAGCACGGACATTGCTTCTAGCCTGTTTCACACGTTGGACGGTAgaa
gtgattagattgacaccgATGGAAATATCATTTAATTTGGCTTGAAGAAG
TTCAGTAACACGCAATGTAAGTTCAAGAACACGGTAGCAAACTACTAAGT
TGACAATAAAATCAAATGAGtcaatagctttaaaaaaagagaaagcaTCT
TTTCGGGTTTGATCGTTATACTTGCGGTTCGCATTGTTCTTTATTTCTTC
GAGGGTAAACCAAAGAGGTTCAAAAAGCTCAATAAAAAGTTCAAGGTCTT
TGATTCTTTCGACCCATCTAGTTTTAGAAGGATCCCTCAATTTTTTAGCC
TTGGAGCTAGAGTTTGAATCCTTATTGGAAGATAACCATTCACCATCAAG
GTTGTCACTCACACGATGAGAGAGGCGAAAAGACttgacatatttttcaa
aacaccTTTGCCTTATCTCtgaattgtgaaaaaaataagtA
Run BLAST on NCBI

protein sequence of TCONS_00009069-protein

>TCONS_00009069-protein ID=TCONS_00009069-protein|Name=TCONS_00009069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
TYFFHNSEIRQRCFEKYVKSFRLSHRVSDNLDGEWLSSNKDSNSSSKAKK
LRDPSKTRWVERIKDLELFIELFEPLWFTLEEIKNNANRKYNDQTRKDAF
SFFKAIDSFDFIVNLVVCYRVLELTLRVTELLQAKLNDISIGVNLITSTV
QRVKQARSNVRAEHDEWFQFAVDIANRLNINVSKPRTKRGRFFVIIILPK
LYLITIEFL
Run BLAST on NCBI

transcript from alignment at sc0000089:538888..540278

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009069 ID=TCONS_00009069|Name=TCONS_00009069|organism=Clytia hemisphaerica|type=transcript|length=1391bp|location=Sequence derived from alignment at sc0000089:538888..540278 (Clytia hemisphaerica)
TacttatttttttcacaattcaGAGATAAGGCAAAggtgttttgaaaaat
atgtcaaGTCTTTTCGCCTCTCTCATCGTGTGAGTGACAACCTTGATGGT
GAATGGTTATCTTCCAATAAGGATTCAAACTCTAGCTCCAAGGCTAAAAA
ATTGAGGGATCCTTCTAAAACTAGATGGGTCGAAAGAATCAAAGACCTTG
AACTTTTTATTGAGCTTTTTGAACCTCTTTGGTTTACCCTCGAAGAAATA
AAGAACAATGCGAACCGCAAGTATAACGATCAAACCCGAAAAGAtgcttt
ctctttttttaaagctattgaCTCATTTGATTTTATTGTCAACTTAGTAG
TTTGCTACCGTGTTCTTGAACTTACATTGCGTGTTACTGAACTTCTTCAA
GCCAAATTAAATGATATTTCCATcggtgtcaatctaatcacttcTACCGT
CCAACGTGTGAAACAGGCTAGAAGCAATGTCCGTGCTGAGCATGATGAAT
GGTTTCAATTTGCCGTGGATATAGCTAATAGGCTAAATATCAATGTCTCA
AAACCTAGGACAAAAAGAGGCAGATTTTTCGTGATAATCATCCTGCCGAA
ACTGTATCTGATTACTATAGAGTTTCTCTGACTGTACCTCTTTTAGATAC
TTTTTACTCGGAGTTCATTGGTCGTTTTTCTGAGCATTCTTTGCTTGCAT
ACAAAGGTTTATATCTTTTGCCCAAATCTTTTTTGTCCGAGGAAGATGTG
GCTGTCAAACTCGGacctttttttcgtttttactcTCACGATATGGTTTC
TCCACTACGAATTAATGAGGAAATTAAAGCATATGGGACCTTTTGGGCTG
ATTTCCCACTACTATTTCTGAAACATTAAATGCTATCAAGCATGCAAAGT
TTGATAATATCGAAAGAGCTCTCAGAATTTTAGCTACTATTCCTGTGACT
ACTTGTGAGTGTGAAAGGTCCTTTTCTGATATGAAATTAATTAAGAGTAA
ATTACGTAGTACAATGGGCCAGGATAGGTTAAATGGCCTCTGTCTAATGA
ATGTTCATCTTGACAAAACGCCTGATTCGATGGCAGTATGTGAAAAGTTT
TTAGCTAAACAGCAAAGACGAATTGCTAAGTAATTTGTTATAAAACCGAA
TCTTCgttaaaaacaatttcaactgaaaaaaaaattaaaaaacaatgcaa
aaaaaatacaatttctgatcttttcttcttttcttctttcttcttaaaat
tttcagtgTTCGTTTCTCCATTCAAGCCCGCCAAGATACGGCCGATCCTA
TGAGACACAAAAGTGAATGGACACTTTATATAGGCGTTGACCTGGGCAAA
TTTTCGTGTCAATTACCCTACAAGAATGGAAAGAACCAGCA

Coding sequence (CDS) from alignment at sc0000089:538888..540278

>TCONS_00009069 ID=TCONS_00009069|Name=TCONS_00009069|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0000089:538888..540278 (Clytia hemisphaerica)
acttatttttttcacaattcaGAGATAAGGCAAAggtgttttgaaaaata
tgtcaaGTCTTTTCGCCTCTCTCATCGTGTGAGTGACAACCTTGATGGTG
AATGGTTATCTTCCAATAAGGATTCAAACTCTAGCTCCAAGGCTAAAAAA
TTGAGGGATCCTTCTAAAACTAGATGGGTCGAAAGAATCAAAGACCTTGA
ACTTTTTATTGAGCTTTTTGAACCTCTTTGGTTTACCCTCGAAGAAATAA
AGAACAATGCGAACCGCAAGTATAACGATCAAACCCGAAAAGAtgctttc
tctttttttaaagctattgaCTCATTTGATTTTATTGTCAACTTAGTAGT
TTGCTACCGTGTTCTTGAACTTACATTGCGTGTTACTGAACTTCTTCAAG
CCAAATTAAATGATATTTCCATcggtgtcaatctaatcacttcTACCGTC
CAACGTGTGAAACAGGCTAGAAGCAATGTCCGTGCTGAGCATGATGAATG
GTTTCAATTTGCCGTGGATATAGCTAATAGGCTAAATATCAATGTCTCAA
AACCTAGGACAAAAAGAGGCAGATTTTTCGTGATAATCATCCTGCCGAAA
CTGTATCTGATTACTATAGAGTTTCTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005081XLOC_005081Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009069-proteinTCONS_00009069-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009069-exon-sc0000089-1491911889:538888..540278TCONS_00009069-exon-sc0000089-1491911889:538888..540278Clytia hemisphaericaexon
TCONS_00009069-exon-sc0000089-1510915933:538888..540278TCONS_00009069-exon-sc0000089-1510915933:538888..540278Clytia hemisphaericaexon
TCONS_00009069-exon-sc0000089-1575043694:538888..540278TCONS_00009069-exon-sc0000089-1575043694:538888..540278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:538888..540278 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.06003	0.117077	0.0339845	0.0332486	0.971446	1.3114	0.540246	0.794785	0.303517	0.72058	0.608185	0.239878	0.379279	0.393885	0.426088	0.256064	0.563304	1.57044	0.382879	0.701148	0.0870606	0.0424651	0.0688292	0.0625758	0.161129	0.77654	0.781974	0.13177	0.199886	0.203652
Blast
[Close]
BLAST of TCONS_00009069 vs. Swiss-Prot (Human)
Match: P52K (52 kDa repressor of the inhibitor of the protein kinase OS=Homo sapiens GN=THAP12 PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 5.675e-22
Identity = 39/142 (27.46%), Postives = 72/142 (50.70%), Query Frame = -2 
Query:  815 LRDPSKTRWVERIKDLELFIELFEPLWFTLEEIKNNANRKYNDQTRKDAFSFFKAIDSFDFIVNLVVCYXXXXXXXXXXXXLQAKLNDISIGVNLITSTVQRVKQARSNVRAEHDEWFQFAVDIANRLNINVSKPRTKRGRF 1240
            L++   ++W  R    E+ +EL + L   L+ I ++ N ++N+     AF    A+  FDFIV +VV   VL  T    + LQ + +D+      +T+ +  + +   N+   H+ WF+ A ++A +L+I +  P    G+F
Sbjct:  419 LKEICHSQWTGRHDAFEILVELLQALVLCLDGINSDTNIRWNNYIAGRAFVLCSAVSDFDFIVTIVVLKNVLSFTRAFGKNLQGQTSDVFFAAGSLTAVLHSLNEVMENIEVYHEFWFEEATNLATKLDIQMKLP----GKF 556

HSP 2 Score: 44.669 bits (104), Expect = 5.675e-22
Identity = 24/70 (34.29%), Postives = 39/70 (55.71%), Query Frame = -3 
Query:  328 PTTISETLNAIKHAKFDNIERALRILATIPVTTCECERSFSDMKLIKSKLRSTMGQDRLNGLCLMNVHLD 537
            P+TI E L+      F N+   L++L  +PV   E ER  +  K +K+ LR+T+   R + L L+N++ D
Sbjct:  659 PSTIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENGRKRLKAYLRNTLTDQRSSNLALLNINFD 728

HSP 3 Score: 33.4982 bits (75), Expect = 5.675e-22
Identity = 22/82 (26.83%), Postives = 36/82 (43.90%), Query Frame = -1 
Query:  546 TVSDYYRVSLTVPLLDTFYSEFIGRFSEHSLLAYKGLYLLPKSFLSEEDVAVKLGPFFRFYSHDMVSPLRINEEIKAYGTFW 791
            T   YY+ +L+VP ++    E    FSE  L A K L L+P S + +             Y  D+ +P  ++ E+  +   W
Sbjct:  569 TSESYYKETLSVPTVEHIIQELKDIFSEQHLKALKCLSLVP-SVMGQLKFNTSEEHHADMYRSDLPNPDTLSAELHCWRIKW 649
The following BLAST results are available for this feature:
BLAST of TCONS_00009069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P52K5.675e-2227.4652 kDa repressor of the inhibitor of the protein k... [more]
back to top