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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008988 ID=TCONS_00008988|Name=TCONS_00008988|organism=Clytia hemisphaerica|type=transcript|length=1985bp
GGATCTAACAGTTGAAGTCACAAAGTAGTTTGACCTGTTCTGCTGTTAAA
AGATCGAATCTTAATCTGAAAATGGCGTCACCTAATGAAACAGAGGTGAT
TCCCTTGAATGAAAACAGCAAAGCTCTTGCAATGAAGGACAATGACATCG
AAAGTAAGCCAATATCAGGGCGCCAGTCACCAGCAGTTCGATCAGAAACT
GGTTCTGGCACCATCACTGATGATAGCAAAAACCTGAAGAGCTTAAAAGG
TTTAGATGATGTCAACATCTCCTCGTTGACTATACATGGATTACCAAGAG
CTATAGAAAGCACATCATGGATTGCCAGAATCTTTTGGATGATTCTGTTT
CTCATTGGGTTTGGATTCTTCGTCAAATTTGCTAATGTGGCAGTCACGCA
TTACCTACAACACGACATCTTCCAAAGAGTCACAATGAAAGCTTTGAAAC
GAATGCCTTTTCCAAGTGTCACGATTTGCAACATGCGTAAAGTGTACGGT
GAACTCAACGAGCGCCATTTCACCAAGAAACACAAGTCACCAAAGTCTGG
AGTCAACCACTACCTTCATCATCACCGTCGTATGCACAAAAATAACGTAG
actttgaagcattttcaaacGGTTATGAGAAACTTGTCAATCAAACCAAC
AGTAATTTCTGCCATTTCGGAAATCCATACAGAACTTGTGATACCGATCA
TTTCAAATCACTTAGTCTACTCCCAAAATGCATCACATTCAACCCTGAAG
GAAATGTCTTCCAAACGCAAAGCGGACGAAACTTTGGCTTACAAATGATG
TTGTTTTTCAATACAAGTAATGACATAGAAGTAAAAGCCGATCCTCATTT
CAGTGGAAATGACCAAGATGATATTGCAGTCTTGATCCACGAACCAGGCA
CATATCCCGACTTATCATACCGTCCAATCTTCCTTGAAACAGGCTCTCGT
ACAAATGTTGCTCTCCGAAAAAAGAAATCATCCCGATTACCTGCACCGGC
ACCAACCAAATGTGTGCACGGAATGCGCGAGACAAAATACAACATTTTTC
CAGGTAAATATATCCCATCCTTATGCAAAGATTCATGTCACCTCTACAAA
GCGTATTTAGAATGTGGCGATGTACCAGAATATTTCAGATTGATCCTCGG
TCCACGTGCTTTACCTGCTATCAACATGACTGGTAAAATTGATCAAGAAG
CATGCCTTAAAAAGCATCTTAAATATTACCAGTACCGTTTAACGGAATCG
TCTTGTGATTGTCCACCGTCCTGTGAATCGAGCTCTTATGAAACCTTGCT
AACATCAACTAGATGGCCTTCCAAAGTCAAAGTAAACTCTGTTCTACAAT
ACATGCAAGAATCATTCAATACAACCAATTTCAACACGACAGATTTAGAG
AATGACGTGGCGTACCTTTCAATCTTTTATGATGATTTCTTAATCAGTGT
CGAAGAGGAGGTTACGAAATACGATACCTTTAGCCTGATTTCTGATCTTG
GTGGACAGGCTGGATTGTACTTAGGAGCTTCGTTCTTTTCAATCGTTGAA
TTGGCCCTGGTTCTCTTTTTCTTCATCCTtgctgaaattaaaaaatacat
gagCGAAAGAATTCAAGAAGCAACTGCTTGATTCCTGGTGAATGACATTT
AGaatatatttgacatatttagaataatttttaaatatttaaagaaCCAT
TGGAACTTTATTTAATTTATCCATCGAAATGTTGGCATGACTTGTATGGC
AAAGGTTGTTACTTGGTATGGGTGTGGCTGGTAAATCACACCACCTTAAA
AATCTCACGATGAATTAAAGAGACAACGCAACAATACAGACAAAGATAAT
ATACAGTGAAGCATCTGGTCAAACGCAGTACTGACTTttataaaccaaaa
tatggaataaattgaaaaaaaataggaAAGATTAAAAAAGAGGCATTAAT
AGAATACGAATTCTGTTAGTCATGTTTATCGTGTA Run BLAST on NCBI protein sequence of TCONS_00008988-protein >TCONS_00008988-protein ID=TCONS_00008988-protein|Name=TCONS_00008988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MASPNETEVIPLNENSKALAMKDNDIESKPISGRQSPAVRSETGSGTITD
DSKNLKSLKGLDDVNISSLTIHGLPRAIESTSWIARIFWMILFLIGFGFF
VKFANVAVTHYLQHDIFQRVTMKALKRMPFPSVTICNMRKVYGELNERHF
TKKHKSPKSGVNHYLHHHRRMHKNNVDFEAFSNGYEKLVNQTNSNFCHFG
NPYRTCDTDHFKSLSLLPKCITFNPEGNVFQTQSGRNFGLQMMLFFNTSN
DIEVKADPHFSGNDQDDIAVLIHEPGTYPDLSYRPIFLETGSRTNVALRK
KKSSRLPAPAPTKCVHGMRETKYNIFPGKYIPSLCKDSCHLYKAYLECGD
VPEYFRLILGPRALPAINMTGKIDQEACLKKHLKYYQYRLTESSCDCPPS
CESSSYETLLTSTRWPSKVKVNSVLQYMQESFNTTNFNTTDLENDVAYLS
IFYDDFLISVEEEVTKYDTFSLISDLGGQAGLYLGASFFSIVELALVLFF
FILAEIKKYMSERIQEATA Run BLAST on NCBI transcript from alignment at sc0000089:285256..287334+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008988 ID=TCONS_00008988|Name=TCONS_00008988|organism=Clytia hemisphaerica|type=transcript|length=2079bp|location=Sequence derived from alignment at sc0000089:285256..287334+ (Clytia hemisphaerica)
GGATCTAACAGTTGAAGTCACAAAGTAGTTTGACCTGTTCTGCTGTTAAA
AGATCGAATCTTAATCTGAAAATGGCGTCACCTAATGAAACAGAGGTGAT
TCCCTTGAATGAAAACAGCAAAGCTCTTGCAATGAAGGACAATGACATCG
AAAGTAAGCCAATATCAGGGCGCCAGTCACCAGCAGTTCGATCAGAAACT
GGTTCTGGCACCATCACTGATGATAGCAAAAACCTGAAGAGCTTAAAAGG
TTTAGATGATGTCAACATCTCCTCGTTGACTATACATGGATNCTGGTTCT
GGCACCATCACTGATGATAGCAAAAACCTGAAGAGCTTAAAAGGTTTAGA
TGATGTCAACATCTCCTCGCTAACTATACATGGATTACCAAGAGCTATAG
AAAGCACATCATGGATTGCCAGAATCTTTTGGATGATTCTGTTTCTCATT
GGGTTTGGATTCTTCGTCAAATTTGCTAATGTGGCAGTCACGCATTACCT
ACAACACGACATCTTCCAAAGAGTCACAATGAAAGCTTTGAAACGAATGC
CTTTTCCAAGTGTCACGATTTGCAACATGCGTAAAGTGTACGGTGAACTC
AACGAGCGCCATTTCACCAAGAAACACAAGTCACCAAAGTCTGGAGTCAA
CCACTACCTTCATCATCACCGTCGTATGCACAAAAATAACGTAGactttg
aagcattttcaaacGGTTATGAGAAACTTGTCAATCAAACCAACAGTAAT
TTCTGCCATTTCGGAAATCCATACAGAACTTGTGATACCGATCATTTCAA
ATCACTTAGTCTACTCCCAAAATGCATCACATTCAACCCTGAAGGAAATG
TCTTCCAAACGCAAAGCGGACGAAACTTTGGCTTACAAATGATGTTGTTT
TTCAATACAAGTAATGACATAGAAGTAAAAGCCGATCCTCATTTCAGTGG
AAATGACCAAGATGATATTGCAGTCTTGATCCACGAACCAGGCACATATC
CCGACTTATCATACCGTCCAATCTTCCTTGAAACAGGCTCTCGTACAAAT
GTTGCTCTCCGAAAAAAGAAATCATCCCGATTACCTGCACCGGCACCAAC
CAAATGTGTGCACGGAATGCGCGAGACAAAATACAACATTTTTCCAGGTA
AATATATCCCATCCTTATGCAAAGATTCATGTCACCTCTACAAAGCGTAT
TTAGAATGTGGCGATGTACCAGAATATTTCAGATTGATCCTCGGTCCACG
TGCTTTACCTGCTATCAACATGACTGGTAAAATTGATCAAGAAGCATGCC
TTAAAAAGCATCTTAAATATTACCAGTACCGTTTAACGGAATCGTCTTGT
GATTGTCCACCGTCCTGTGAATCGAGCTCTTATGAAACCTTGCTAACATC
AACTAGATGGCCTTCCAAAGTCAAAGTAAACTCTGTTCTACAATACATGC
AAGAATCATTCAATACAACCAATTTCAACACGACAGATTTAGAGAATGAC
GTGGCGTACCTTTCAATCTTTTATGATGATTTCTTAATCAGTGTCGAAGA
GGAGGTTACGAAATACGATACCTTTAGCCTGATTTCTGATCTTGGTGGAC
AGGCTGGATTGTACTTAGGAGCTTCGTTCTTTTCAATCGTTGAATTGGCC
CTGGTTCTCTTTTTCTTCATCCTtgctgaaattaaaaaatacatgagCGA
AAGAATTCAAGAAGCAACTGCTTGATTCCTGGTGAATGACATTTAGaata
tatttgacatatttagaataatttttaaatatttaaagaaCCATTGGAAC
TTTATTTAATTTATCCATCGAAATGTTGGCATGACTTGTATGGCAAAGGT
TGTTACTTGGTATGGGTGTGGCTGGTAAATCACACCACCTTAAAAATCTC
ACGATGAATTAAAGAGACAACGCAACAATACAGACAAAGATAATATACAG
TGAAGCATCTGGTCAAACGCAGTACTGACTTttataaaccaaaatatgga
ataaattgaaaaaaaataggaAAGATTAAAAAAGAGGCATTAATAGAATA
CGAATTCTGTTAGTCATGTTTATCGTGTA Coding sequence (CDS) from alignment at sc0000089:285256..287334+ >TCONS_00008988 ID=TCONS_00008988|Name=TCONS_00008988|organism=Clytia hemisphaerica|type=CDS|length=3120bp|location=Sequence derived from alignment at sc0000089:285256..287334+ (Clytia hemisphaerica)
ATGGCGTCACCTAATGAAACAGAGGTGATTCCCTTGAATGAAAACAGCAA
AGCTCTTGCAATGAAGGACAATGACATCGAAAGTAAGCCAATATCAGGGC
GCCAGTCACCAGCAGTTCGATCAGAAACTGGTTCTGGCACCATCACTGAT
GATAGCAAAAACCTGAAGAGCTTAAAAGGTTTAGATGATGTCAACATCTC
CTCGTTGACTATACATGGATTACCAAGAGCTATAGAAAGCACATCATGGA
TTGCCAGAATCTTTTGGATGATTCTGTTTCTCATTGGGTTTGGATTCTTC
GTCAAATTTGCTAATGTGGCAGTCACGCATTACCTACAACACGACATCTT
CCAAAGAGTCACAATGAAAGCTTTGAAACGAATGCCTTTTCCAAGTGTCA
CGATTTGCAACATGCGTAAAGTGTACGGTGAACTCAACGAGCGCCATTTC
ACCAAGAAACACAAGTCACCAAAGTCTGGAGTCAACCACTACCTTCATCA
TCACCGTCGTATGCACAAAAATAACGTAGactttgaagcattttcaaacG
GTTATGAGAAACTTGTCAATCAAACCAACAGTAATTTCTGCCATTTCGGA
AATCCATACAGAACTTGTGATACCGATCATTTCAAATCACTTAGTCTACT
CCCAAAATGCATCACATTCAACCCTGAAGGAAATGTCTTCCAAACGCAAA
GCGGACGAAACTTTGGCTTACAAATGATGTTGTTTTTCAATACAAGTAAT
GACATAGAAGTAAAAGCCGATCCTCATTTCAGTGGAAATGACCAAGATGA
TATTGCAGTCTTGATCCACGAACCAGGCACATATCCCGACTTATCATACC
GTCCAATCTTCCTTGAAACAGGCTCTCGTACAAATGTTGCTCTCCGAAAA
AAGAAATCATCCCGATTACCTGCACCGGCACCAACCAAATGTGTGCACGG
AATGCGCGAGACAAAATACAACATTTTTCCAGGTAAATATATCCCATCCT
TATGCAAAGATTCATGTCACCTCTACAAAGCGTATTTAGAATGTGGCGAT
GTACCAGAATATTTCAGATTGATCCTCGGTCCACGTGCTTTACCTGCTAT
CAACATGACTGGTAAAATTGATCAAGAAGCATGCCTTAAAAAGCATCTTA
AATATTACCAGTACCGTTTAACGGAATCGTCTTGTGATTGTCCACCGTCC
TGTGAATCGAGCTCTTATGAAACCTTGCTAACATCAACTAGATGGCCTTC
CAAAGTCAAAGTAAACTCTGTTCTACAATACATGCAAGAATCATTCAATA
CAACCAATTTCAACACGACAGATTTAGAGAATGACGTGGCGTACCTTTCA
ATCTTTTATGATGATTTCTTAATCAGTGTCGAAGAGGAGGTTACGAAATA
CGATACCTTTAGCCTGATTTCTGATCTTGGTGGACAGGCTGGATTGTACT
TAGGAGCTTCGTTCTTTTCAATCGTTGAATTGGCCCTGGTTCTCTTTTTC
TTCATCCTtgctgaaattaaaaaatacatgagCGAAAGAATTCAAGAAGC
AACTGCTTGAATGGCGTCACCTAATGAAACAGAGGTGATTCCCTTGAATG
AAAACAGCAAAGCTCTTGCAATGAAGGACAATGACATCGAAAGTAAGCCA
ATATCAGGGCGCCAGTCACCAGCAGTTCGATCAGAAACTGGTTCTGGCAC
CATCACTGATGATAGCAAAAACCTGAAGAGCTTAAAAGGTTTAGATGATG
TCAACATCTCCTCGTTGACTATACATGGATTACCAAGAGCTATAGAAAGC
ACATCATGGATTGCCAGAATCTTTTGGATGATTCTGTTTCTCATTGGGTT
TGGATTCTTCGTCAAATTTGCTAATGTGGCAGTCACGCATTACCTACAAC
ACGACATCTTCCAAAGAGTCACAATGAAAGCTTTGAAACGAATGCCTTTT
CCAAGTGTCACGATTTGCAACATGCGTAAAGTGTACGGTGAACTCAACGA
GCGCCATTTCACCAAGAAACACAAGTCACCAAAGTCTGGAGTCAACCACT
ACCTTCATCATCACCGTCGTATGCACAAAAATAACGTAGactttgaagca
ttttcaaacGGTTATGAGAAACTTGTCAATCAAACCAACAGTAATTTCTG
CCATTTCGGAAATCCATACAGAACTTGTGATACCGATCATTTCAAATCAC
TTAGTCTACTCCCAAAATGCATCACATTCAACCCTGAAGGAAATGTCTTC
CAAACGCAAAGCGGACGAAACTTTGGCTTACAAATGATGTTGTTTTTCAA
TACAAGTAATGACATAGAAGTAAAAGCCGATCCTCATTTCAGTGGAAATG
ACCAAGATGATATTGCAGTCTTGATCCACGAACCAGGCACATATCCCGAC
TTATCATACCGTCCAATCTTCCTTGAAACAGGCTCTCGTACAAATGTTGC
TCTCCGAAAAAAGAAATCATCCCGATTACCTGCACCGGCACCAACCAAAT
GTGTGCACGGAATGCGCGAGACAAAATACAACATTTTTCCAGGTAAATAT
ATCCCATCCTTATGCAAAGATTCATGTCACCTCTACAAAGCGTATTTAGA
ATGTGGCGATGTACCAGAATATTTCAGATTGATCCTCGGTCCACGTGCTT
TACCTGCTATCAACATGACTGGTAAAATTGATCAAGAAGCATGCCTTAAA
AAGCATCTTAAATATTACCAGTACCGTTTAACGGAATCGTCTTGTGATTG
TCCACCGTCCTGTGAATCGAGCTCTTATGAAACCTTGCTAACATCAACTA
GATGGCCTTCCAAAGTCAAAGTAAACTCTGTTCTACAATACATGCAAGAA
TCATTCAATACAACCAATTTCAACACGACAGATTTAGAGAATGACGTGGC
GTACCTTTCAATCTTTTATGATGATTTCTTAATCAGTGTCGAAGAGGAGG
TTACGAAATACGATACCTTTAGCCTGATTTCTGATCTTGGTGGACAGGCT
GGATTGTACTTAGGAGCTTCGTTCTTTTCAATCGTTGAATTGGCCCTGGT
TCTCTTTTTCTTCATCCTtgctgaaattaaaaaatacatgagCGAAAGAA
TTCAAGAAGCAACTGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008988-exon-sc0000089-1491911889:285256..285540 | TCONS_00008988-exon-sc0000089-1491911889:285256..285540 | Clytia hemisphaerica | exon |
| TCONS_00008988-exon-sc0000089-1510915933:285256..285540 | TCONS_00008988-exon-sc0000089-1510915933:285256..285540 | Clytia hemisphaerica | exon |
| TCONS_00008988-exon-sc0000089-1575043694:285256..285540 | TCONS_00008988-exon-sc0000089-1575043694:285256..285540 | Clytia hemisphaerica | exon |
| TCONS_00008988-exon-sc0000089-1491911889:285635..287334 | TCONS_00008988-exon-sc0000089-1491911889:285635..287334 | Clytia hemisphaerica | exon |
| TCONS_00008988-exon-sc0000089-1510915933:285635..287334 | TCONS_00008988-exon-sc0000089-1510915933:285635..287334 | Clytia hemisphaerica | exon |
| TCONS_00008988-exon-sc0000089-1575043694:285635..287334 | TCONS_00008988-exon-sc0000089-1575043694:285635..287334 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:285256..287334 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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