TCONS_00008988-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008988-protein
Unique Name	TCONS_00008988-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	519

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008988-protein ID=TCONS_00008988-protein|Name=TCONS_00008988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MASPNETEVIPLNENSKALAMKDNDIESKPISGRQSPAVRSETGSGTITD
DSKNLKSLKGLDDVNISSLTIHGLPRAIESTSWIARIFWMILFLIGFGFF
VKFANVAVTHYLQHDIFQRVTMKALKRMPFPSVTICNMRKVYGELNERHF
TKKHKSPKSGVNHYLHHHRRMHKNNVDFEAFSNGYEKLVNQTNSNFCHFG
NPYRTCDTDHFKSLSLLPKCITFNPEGNVFQTQSGRNFGLQMMLFFNTSN
DIEVKADPHFSGNDQDDIAVLIHEPGTYPDLSYRPIFLETGSRTNVALRK
KKSSRLPAPAPTKCVHGMRETKYNIFPGKYIPSLCKDSCHLYKAYLECGD
VPEYFRLILGPRALPAINMTGKIDQEACLKKHLKYYQYRLTESSCDCPPS
CESSSYETLLTSTRWPSKVKVNSVLQYMQESFNTTNFNTTDLENDVAYLS
IFYDDFLISVEEEVTKYDTFSLISDLGGQAGLYLGASFFSIVELALVLFF
FILAEIKKYMSERIQEATA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005034	XLOC_005034	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008988	TCONS_00008988	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001873	ENaC

Vocabulary: **Biological Process**
Term	Definition
GO:0006814	sodium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005272	sodium channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006814	sodium ion transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005272	sodium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001873	Epithelial sodium channel	PRINTS	PR01078	AMINACHANNEL	coord: 235..253 score: 28.63 coord: 477..493 score: 47.76 coord: 86..103 score: 26.22 coord: 126..142 score: 37.65 coord: 330..341 score: 33.33 coord: 443..463 score: 25.33 coord: 397..417 score: 32.95 coord: 463..477 score: 34.67
IPR001873	Epithelial sodium channel	PFAM	PF00858	ASC	coord: 68..495 e-value: 9.1E-67 score: 225.8
None	No IPR available	GENE3D	1.10.287.770		coord: 451..504 e-value: 5.2E-12 score: 45.1
None	No IPR available	GENE3D	2.60.470.10		coord: 117..358 e-value: 3.1E-21 score: 75.6 coord: 388..450 e-value: 0.028 score: 13.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51

Blast

[Close]

BLAST of TCONS_00008988-protein vs. Swiss-Prot (Human)
Match: ASIC5 (Acid-sensing ion channel 5 OS=Homo sapiens GN=ASIC5 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.034e-16
Identity = 98/461 (21.26%), Postives = 175/461 (37.96%), Query Frame = 0

Query:   68 SLTIHGLPRAIESTSWIARIFWMILFLIGFGFFVKFANVAVTHYLQHDIFQRVTMKALKRMPFPSVTICNMRKVYGELNERHFTKKHKSPKSGVNHYLHH--HRRMHKNNV-----------DFEAFSNGYEKLVNQTNSNF---------CH-FGNPYRTCDTDHFKSLSLLPKCITFNPEGNVFQTQSGRNF-GLQMMLFFNTSNDIEVKADPHFSGNDQDDIAVLIHEPGTYPDLSYRPIFLETGSRTNVALRKKKSSRLPAPAPTKCVHGMRETKYNIFPGKYIPSLCKDSCHLYKAYLECGDVPEYFRLILGPRALPAINMTGKIDQE-ACLKKHLKYYQYR----LTESSCDCPPSCESSSYETLLTSTRWPSKVKVNSVLQYMQESFNTTNFNTTDLENDVAYLSIFYDDFLISVEEEVTKYDTFSLISDLGGQAGLYLGASFFSIVELALVLF 499
            S + HG+   +++ S I R+ W+++ L           + + +Y        + ++ +++M FP+VT CN+ +           +     K GV  +L H   + +H   +           DF A    +  +    N  F         C  FG P    D  H    +    C TFN  G   Q +   +  G  + L FN +   E   D    G     I  +IH P   P      +    G    V +R+ K+     P   +C   ++   ++     Y  S C   C       +CG V         P  LP   +   + +  +C+   L + +++    +   +  CP SCE   Y   ++ + +PS+      L+Y+ +  N +      +  ++  + I Y D    + ++        L++DLGGQ GL+ GAS  +I+E+   LF
Sbjct:   44 STSFHGIHNIVQNRSKIRRVLWLVVVLGSVSLVTWQIYIRLLNYFTWPTTTSIEVQYVEKMEFPAVTFCNLNRF----------QTDAVAKFGVIFFLWHIVSKVLHLQEITANSTGSREATDFAASHQNFSIVEFIRNKGFYLNNSTLLDCEFFGKPCSPKDFAHV--FTEYGNCFTFN-HGETLQAKRKVSVSGRGLSLLFNVNQ--EAFTDNPALGFVDAGIIFVIHSPKKVPQFDGLGLLSPVGMHARVTIRQVKTVHQEYPW-GECNPNIKLQNFS----SYSTSGCLKECKAQHIKKQCGCV---------PFLLPGYGIECDLQKYFSCVSPVLDHIEFKDLCTVGTHNSSCPVSCEEIEYPATISYSSFPSQ----KALKYLSKKLNQSR---KYIRENLVKIEINYSDLNYKITQQQKAVSVSELLADLGGQLGLFCGASLITIIEIIEYLF 468

The following BLAST results are available for this feature:

BLAST of TCONS_00008988-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008988-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASIC5	8.034e-16	21.26	Acid-sensing ion channel 5 OS=Homo sapiens GN=ASIC...	[more]

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TCONS_00008988-protein (polypeptide) - C. hemisphaerica