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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008698 ID=TCONS_00008698|Name=TCONS_00008698|organism=Clytia hemisphaerica|type=transcript|length=2296bp
GTTCGTCGGGGGCTCGTCCTATTCAAATGATTCACTTTTGAAAGATTTAA
AATCTGCTGCGTTTCTTCATTTTTGCGTGTACTTTTGAAATATAGCTTTT
AGAGGTGTCCCTTTAAAAaggtaaacattcgaaagtgGCACGCAAATCAC
ATCTCCAAAAATGGCGAAACACGACTTgacctttttttttcaaattttac
agaTATTTATTCTGAGATTCAACGAAATTCACATTAAAGGTATTCATCTG
AGACTTGtctttatatctttgtttactCTAATTCTAGGTATTAAAAACAC
AGAAATTTGATAATATGcttcaaaatgagaatttttaaattttttgtttt
ggtattttttgtgGGTGGAGCATTTTCTAGTTCTAATGATGACTTTGTCA
CCTTACCAAATGCAGAATGTATGCCAAGGGAAACTGTAGTTTCTATTGAC
TCTCCAAGATATGCCCTAAAACCAAGTAAAGTTCTACTTCACCGTTGTGA
TGGAAGTTTCGACGATCTAACACCGGCATTGAAAAGTTGTGTTAAAAATG
AATCAGTAACTCTCAATGTTAAAGTACAAAATATCTTTATGTTAACTAAT
GAGATTGTTGAGCTGGAAAACCACACAACTTGCAAACAACAGTGTGTTTT
TGATGGTTCGCAGTGcaataaaaaccaaaaatgGGATGCTGAGAACTGTC
TTTGTGTATGTGACCACAACAAACGATTTCAATGTCCTGAACATCATATT
TGGGAACCAAATCTTTGCCAGTGTGTTTGTAATCGAGCTTGTCCTTTCAA
AAGACATTATCTAGATCAAGAAGACTGCACTTGTACTTGTAAACCAAAAT
TCTACAAGCGTTGTAATAAAAGGGACAAAGTTTTAGTGGCAGACAATTGC
ACATGTACAGATCCCAAGTTTCAACCTGTTGAAGGACTTGATGGAAATTG
TGATATTATACCAACAAAATGGGCAGTTTTGATAATTGTCTTGTCATTCT
TTGCTATATTCATAATAGCATTTGATTGTATTCTATACACTCGTAACACT
GGTTGTGTGTATCATACAACTCATATTTGTCACAAAAATGAATCCCGAGA
AGAATTGTATCCAATGAAACGTGGTTTAATGAAAACATCAAATGAAGTGA
GAGTATGAGATATAGGTTATATTCAAAAGGGGTTACTTTCAtaactaccg
taagttggtctaatatcgacatcctcctttagagacaggaataatatgaa
agtttgaaTTACTGACTAAAAAAGGATGATTCCTCCCTGACCACCAAGTA
AAGAAAAATAGCTTTGACCtttttatcaatttcagctgataaaaagggtg
ttggaaatagatgagggatgttggcattagaccaagttacggtatggGGT
ATGAAAGCACAAAATATGTTACATCTTGGTGATGGATTATGGTTTGTTCA
GATTAATTTTCATGGTTATAGCTGTTTTCTTTGAGAAATATTTGGAGAAC
GCACAAATTGTTCCATCGTATTGAAGCTGGGATGGTGAAACGATCTAGTT
TGCTTTGGATATTAATAGCaaatcataaaaattgacaGCTAATTTGCTGT
TCATTGTTCAAATTGCTTCTCTACATTCCCTTGctaattaaatttttgaa
agtttttcactcGGGACATTTTTACCCCCCTTAAAGATAAGAAATGCTCT
TAAAACTTCCTCATTTTGCCTCAATTCTTCTTATCAGCTCATTTCTAGTA
TAGAACTCCCAACTGGGACATTCTTATTTCAACCCACTAAGCAATTAGGT
TTTTAGAGTTTTTCAACCCcatgcttattccaaacccccatCTATTATAG
ACTTGAGTGTGTTATTATGTGAAATCATTATAAATCAgtgtttttgagaa
aaagtctTGAGAGAGAGGCAGGTCCTCTTTAAATACATGTTTTAATGGTT
GATTTGATTTCATATGTTACAGCAAACTCTTTCAAAGTTTAATCCATTCA
ACTGTTCTTTGTAGTCTAATCTCTTGTTGAAGTGTCACAGGAAAATTTTC
ATGAACAATttgcttttttgtttcaattttaggGCCAAGAAAACAAAAGT
TGTTTATGAAAATATGAATCAGTAAAACGTAGATAAatttttaataacaa
aaaaatatcctATATATCATAGAGCATATAGATTTAGAATATATTTATAA
CTTTAGAACCTTTTTGGGGTACTTTGTAACatgtaaataatttttattgt
atataaaatgttcgaaaatatgaaaaatatttgaaaagaaaaaaac Run BLAST on NCBI transcript from alignment at sc0000087:57376..59671+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008698 ID=TCONS_00008698|Name=TCONS_00008698|organism=Clytia hemisphaerica|type=transcript|length=2296bp|location=Sequence derived from alignment at sc0000087:57376..59671+ (Clytia hemisphaerica)
GTTCGTCGGGGGCTCGTCCTATTCAAATGATTCACTTTTGAAAGATTTAA
AATCTGCTGCGTTTCTTCATTTTTGCGTGTACTTTTGAAATATAGCTTTT
AGAGGTGTCCCTTTAAAAaggtaaacattcgaaagtgGCACGCAAATCAC
ATCTCCAAAAATGGCGAAACACGACTTgacctttttttttcaaattttac
agaTATTTATTCTGAGATTCAACGAAATTCACATTAAAGGTATTCATCTG
AGACTTGtctttatatctttgtttactCTAATTCTAGGTATTAAAAACAC
AGAAATTTGATAATATGcttcaaaatgagaatttttaaattttttgtttt
ggtattttttgtgGGTGGAGCATTTTCTAGTTCTAATGATGACTTTGTCA
CCTTACCAAATGCAGAATGTATGCCAAGGGAAACTGTAGTTTCTATTGAC
TCTCCAAGATATGCCCTAAAACCAAGTAAAGTTCTACTTCACCGTTGTGA
TGGAAGTTTCGACGATCTAACACCGGCATTGAAAAGTTGTGTTAAAAATG
AATCAGTAACTCTCAATGTTAAAGTACAAAATATCTTTATGTTAACTAAT
GAGATTGTTGAGCTGGAAAACCACACAACTTGCAAACAACAGTGTGTTTT
TGATGGTTCGCAGTGcaataaaaaccaaaaatgGGATGCTGAGAACTGTC
TTTGTGTATGTGACCACAACAAACGATTTCAATGTCCTGAACATCATATT
TGGGAACCAAATCTTTGCCAGTGTGTTTGTAATCGAGCTTGTCCTTTCAA
AAGACATTATCTAGATCAAGAAGACTGCACTTGTACTTGTAAACCAAAAT
TCTACAAGCGTTGTAATAAAAGGGACAAAGTTTTAGTGGCAGACAATTGC
ACATGTACAGATCCCAAGTTTCAACCTGTTGAAGGACTTGATGGAAATTG
TGATATTATACCAACAAAATGGGCAGTTTTGATAATTGTCTTGTCATTCT
TTGCTATATTCATAATAGCATTTGATTGTATTCTATACACTCGTAACACT
GGTTGTGTGTATCATACAACTCATATTTGTCACAAAAATGAATCCCGAGA
AGAATTGTATCCAATGAAACGTGGTTTAATGAAAACATCAAATGAAGTGA
GAGTATGAGATATAGGTTATATTCAAAAGGGGTTACTTTCAtaactaccg
taagttggtctaatatcgacatcctcctttagagacaggaataatatgaa
agtttgaaTTACTGACTAAAAAAGGATGATTCCTCCCTGACCACCAAGTA
AAGAAAAATAGCTTTGACCtttttatcaatttcagctgataaaaagggtg
ttggaaatagatgagggatgttggcattagaccaagttacggtatggGGT
ATGAAAGCACAAAATATGTTACATCTTGGTGATGGATTATGGTTTGTTCA
GATTAATTTTCATGGTTATAGCTGTTTTCTTTGAGAAATATTTGGAGAAC
GCACAAATTGTTCCATCGTATTGAAGCTGGGATGGTGAAACGATCTAGTT
TGCTTTGGATATTAATAGCaaatcataaaaattgacaGCTAATTTGCTGT
TCATTGTTCAAATTGCTTCTCTACATTCCCTTGctaattaaatttttgaa
agtttttcactcGGGACATTTTTACCCCCCTTAAAGATAAGAAATGCTCT
TAAAACTTCCTCATTTTGCCTCAATTCTTCTTATCAGCTCATTTCTAGTA
TAGAACTCCCAACTGGGACATTCTTATTTCAACCCACTAAGCAATTAGGT
TTTTAGAGTTTTTCAACCCcatgcttattccaaacccccatCTATTATAG
ACTTGAGTGTGTTATTATGTGAAATCATTATAAATCAgtgtttttgagaa
aaagtctTGAGAGAGAGGCAGGTCCTCTTTAAATACATGTTTTAATGGTT
GATTTGATTTCATATGTTACAGCAAACTCTTTCAAAGTTTAATCCATTCA
ACTGTTCTTTGTAGTCTAATCTCTTGTTGAAGTGTCACAGGAAAATTTTC
ATGAACAATttgcttttttgtttcaattttaggGCCAAGAAAACAAAAGT
TGTTTATGAAAATATGAATCAGTAAAACGTAGATAAatttttaataacaa
aaaaatatcctATATATCATAGAGCATATAGATTTAGAATATATTTATAA
CTTTAGAACCTTTTTGGGGTACTTTGTAACatgtaaataatttttattgt
atataaaatgttcgaaaatatgaaaaatatttgaaaagaaaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008698-exon-sc0000087-1491911889:57376..59671 | TCONS_00008698-exon-sc0000087-1491911889:57376..59671 | Clytia hemisphaerica | exon |
| TCONS_00008698-exon-sc0000087-1510915933:57376..59671 | TCONS_00008698-exon-sc0000087-1510915933:57376..59671 | Clytia hemisphaerica | exon |
| TCONS_00008698-exon-sc0000087-1575043694:57376..59671 | TCONS_00008698-exon-sc0000087-1575043694:57376..59671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:57376..59671 + |
Blast
The following BLAST results are available for this feature:
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