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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008671 ID=TCONS_00008671|Name=TCONS_00008671|organism=Clytia hemisphaerica|type=transcript|length=2015bp
tttCAGAATAttataaaaagtaatgaataCAGAGTGGAAAGATGATGACC
AGCTTGGAAAGGATATTAGATTATACGTTGAAAGGAATCTCCAACGAACG
GAAGTTCTTGACTATATGAGAAGGGATTACCCTCAATACCCTTGGAGTCT
GTCGAGCTTAGACAGACGTATGAGACATTTTGGTATCAATTACATTGATT
ATCGTGTACCTATTGACCGTGTCAAAGAAGCTGTGAGGAATGAGTTAGAA
GGTCCAGGAAAGCTTTTAGGGTATCGTGCAATGAACCAAAAGCTTCGTAC
ATACCACAATATTCAAGTACCAAGGGACGTTGTCTATGCTGTAATGACGG
ATGAAAATCAGGAACAAATGGAAGCACGCCgacttgaaaagaaaaagaaa
cctAAGAAACGCCCTTTTCAATCAAACGGCTCGTGGAACTTGGCTTCACT
GGATGGGCATGATAAATTATGTGGCTATCAAAATTGGATGTTTCCACTTG
GAATTTACGGATCCTTGGATACTTTCTcaagaaaaattgtttttttgacc
GTAATCTTTTCAAACTCGGATCCAAACGTTATCGGTAGAAAATATTTCGA
CTTTTTATACACATATAGACACATGCCACGGTACTTAAGAGTGGATAGAG
GAAATGAAACAGGAATTATGACTGCCATTCATGCTTATTTGATTGGTCAA
GTTGGCGATTTTGATGATCCAATAGATTCTGTTATCTTTGGAAAATCGAC
TAGCAACAAAATCGAGAGATGGTGGCGAGACCTTCACGAGCGTCTCGAAG
GATATTTCAAAGAGCAGCTAAAAGCTCTTTTGGACAACCATCTGTATGAT
CCAGAAAATGTACAAGATCGTAAGATGCTGGCCTATATTTTCATTCCAGT
CATTCAAAGGGAGTGTAACACTTTCGTAAACATCTGGAATGAACATCGAA
TTCGAGAACAAAAAGACTTGCTTTTGCCAGTAGGTATCCCAGACCATATG
TTCGACTTTCCGGAAACGTACGGTGCTTTTAAGGATGGGTTTCCTCTTAC
AGAGGAAAATTTGAGAGATACTGCTGAAGCTTCGGGTGTGCTAGAAGGAT
CCATAGATTTTCTTGAAGAGGACGAACGAAACTTATTTGGAACTGTTATC
CCATTTCCAGAGACCATTAAATGTTCAGACGCGGTCAAGTCCTACCTCAC
ATTGAAACGAAGAATTCCTTGATTCTTTCTGGCACTTGatttattgtttt
gataatttcgtAATTAGTTATTCAGAACAGGTGCTGAACCGGATTGATTT
TTGTAGTCGAATTCTGTTCCTCAGGGTACTAAAGCTCTGtatttttcttg
aaactttgTATATATTTCATCATGTTACCCTGTATTATTTAGTGCATTAT
TTTATCAAGAAAGTGTACAtcagttgatattttttatttacactCTCTCG
ATTCACTACTTTCCTCAACCAAATGATCCATTCCCAGAAATTGCTTCTCT
TAAAGAATTATCGTTGTTGCCCGATTATTATACTACTTTCTTCGAAAATC
CTGATTAAAATGTCTTTGATGAATATAAACGTGCTACGATAAAATTTCAA
TGATCCTACTTATTTAATTTCATGGTCATTTTGTTTGATCCCTGTCAGAT
GTTTCAAGTTGATAATAAATCTTAATGTACTCTTCCGAAACTAATTCTAG
AGGCAGCTAGAGGACCCACGGGGGTagtacccttgtcgaccgaggGGGTG
TTCTGCTGAGGTTAAAAAAATGGACCCTAGGAGGGACtcattttttggga
aaaatagcCGAAAAAAGCGACACGActgaagttcaatttttcaccaaatc
tTCCAAAAAAGACACCCTAAGTACGAGGGGCTGGTTTTTCTATCTCGTTG
TTTTTGCGACCTTGAGACTCGTGAAGGTGAAAAatggtaccctgaccagc
ggcacatcccgGTACCCCTTTTGGCCCAAGTACCCCCCGGAGGGGACCTC
TCATTTCCATTTATT Run BLAST on NCBI protein sequence of TCONS_00008671-protein >TCONS_00008671-protein ID=TCONS_00008671-protein|Name=TCONS_00008671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MNTEWKDDDQLGKDIRLYVERNLQRTEVLDYMRRDYPQYPWSLSSLDRRM
RHFGINYIDYRVPIDRVKEAVRNELEGPGKLLGYRAMNQKLRTYHNIQVP
RDVVYAVMTDENQEQMEARRLEKKKKPKKRPFQSNGSWNLASLDGHDKLC
GYQNWMFPLGIYGSLDTFSRKIVFLTVIFSNSDPNVIGRKYFDFLYTYRH
MPRYLRVDRGNETGIMTAIHAYLIGQVGDFDDPIDSVIFGKSTSNKIERW
WRDLHERLEGYFKEQLKALLDNHLYDPENVQDRKMLAYIFIPVIQRECNT
FVNIWNEHRIREQKDLLLPVGIPDHMFDFPETYGAFKDGFPLTEENLRDT
AEASGVLEGSIDFLEEDERNLFGTVIPFPETIKCSDAVKSYLTLKRRIP Run BLAST on NCBI transcript from alignment at sc0000086:631317..633331 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008671 ID=TCONS_00008671|Name=TCONS_00008671|organism=Clytia hemisphaerica|type=transcript|length=2015bp|location=Sequence derived from alignment at sc0000086:631317..633331 (Clytia hemisphaerica)
AATAAATGGAAATGAGAGGTCCCCTCCGGGGGGTACTTGGGCCAAAAGGG
GTACcgggatgtgccgctggtcagggtaccatTTTTCACCTTCACGAGTC
TCAAGGTCGCAAAAACAACGAGATAGAAAAACCAGCCCCTCGTACTTAGG
GTGTCTTTTTTGGAagatttggtgaaaaattgaacttcagTCGTGTCGCT
TTTTTCGgctatttttcccaaaaaatgaGTCCCTCCTAGGGTCCATTTTT
TTAACCTCAGCAGAACACCCcctcggtcgacaagggtactACCCCCGTGG
GTCCTCTAGCTGCCTCTAGAATTAGTTTCGGAAGAGTACATTAAGATTTA
TTATCAACTTGAAACATCTGACAGGGATCAAACAAAATGACCATGAAATT
AAATAAGTAGGATCATTGAAATTTTATCGTAGCACGTTTATATTCATCAA
AGACATTTTAATCAGGATTTTCGAAGAAAGTAGTATAATAATCGGGCAAC
AACGATAATTCTTTAAGAGAAGCAATTTCTGGGAATGGATCATTTGGTTG
AGGAAAGTAGTGAATCGAGAGagtgtaaataaaaaatatcaactgaTGTA
CACTTTCTTGATAAAATAATGCACTAAATAATACAGGGTAACATGATGAA
ATATATAcaaagtttcaagaaaaataCAGAGCTTTAGTACCCTGAGGAAC
AGAATTCGACTACAAAAATCAATCCGGTTCAGCACCTGTTCTGAATAACT
AATTacgaaattatcaaaacaataaatCAAGTGCCAGAAAGAATCAAGGA
ATTCTTCGTTTCAATGTGAGGTAGGACTTGACCGCGTCTGAACATTTAAT
GGTCTCTGGAAATGGGATAACAGTTCCAAATAAGTTTCGTTCGTCCTCTT
CAAGAAAATCTATGGATCCTTCTAGCACACCCGAAGCTTCAGCAGTATCT
CTCAAATTTTCCTCTGTAAGAGGAAACCCATCCTTAAAAGCACCGTACGT
TTCCGGAAAGTCGAACATATGGTCTGGGATACCTACTGGCAAAAGCAAGT
CTTTTTGTTCTCGAATTCGATGTTCATTCCAGATGTTTACGAAAGTGTTA
CACTCCCTTTGAATGACTGGAATGAAAATATAGGCCAGCATCTTACGATC
TTGTACATTTTCTGGATCATACAGATGGTTGTCCAAAAGAGCTTTTAGCT
GCTCTTTGAAATATCCTTCGAGACGCTCGTGAAGGTCTCGCCACCATCTC
TCGATTTTGTTGCTAGTCGATTTTCCAAAGATAACAGAATCTATTGGATC
ATCAAAATCGCCAACTTGACCAATCAAATAAGCATGAATGGCAGTCATAA
TTCCTGTTTCATTTCCTCTATCCACTCTTAAGTACCGTGGCATGTGTCTA
TATGTGTATAAAAAGTCGAAATATTTTCTACCGATAACGTTTGGATCCGA
GTTTGAAAAGATTACggtcaaaaaaacaatttttcttgAGAAAGTATCCA
AGGATCCGTAAATTCCAAGTGGAAACATCCAATTTTGATAGCCACATAAT
TTATCATGCCCATCCAGTGAAGCCAAGTTCCACGAGCCGTTTGATTGAAA
AGGGCGTTTCTTaggtttctttttcttttcaagtcGGCGTGCTTCCATTT
GTTCCTGATTTTCATCCGTCATTACAGCATAGACAACGTCCCTTGGTACT
TGAATATTGTGGTATGTACGAAGCTTTTGGTTCATTGCACGATACCCTAA
AAGCTTTCCTGGACCTTCTAACTCATTCCTCACAGCTTCTTTGACACGGT
CAATAGGTACACGATAATCAATGTAATTGATACCAAAATGTCTCATACGT
CTGTCTAAGCTCGACAGACTCCAAGGGTATTGAGGGTAATCCCTTCTCAT
ATAGTCAAGAACTTCCGTTCGTTGGAGATTCCTTTCAACGTATAATCTAA
TATCCTTTCCAAGCTGGTCATCATCTTTCCACTCTGtattcattactttt
tataaTATTCTGaaa Coding sequence (CDS) from alignment at sc0000086:631317..633331 >TCONS_00008671 ID=TCONS_00008671|Name=TCONS_00008671|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at sc0000086:631317..633331 (Clytia hemisphaerica)
TCAAGGAATTCTTCGTTTCAATGTGAGGTAGGACTTGACCGCGTCTGAAC
ATTTAATGGTCTCTGGAAATGGGATAACAGTTCCAAATAAGTTTCGTTCG
TCCTCTTCAAGAAAATCTATGGATCCTTCTAGCACACCCGAAGCTTCAGC
AGTATCTCTCAAATTTTCCTCTGTAAGAGGAAACCCATCCTTAAAAGCAC
CGTACGTTTCCGGAAAGTCGAACATATGGTCTGGGATACCTACTGGCAAA
AGCAAGTCTTTTTGTTCTCGAATTCGATGTTCATTCCAGATGTTTACGAA
AGTGTTACACTCCCTTTGAATGACTGGAATGAAAATATAGGCCAGCATCT
TACGATCTTGTACATTTTCTGGATCATACAGATGGTTGTCCAAAAGAGCT
TTTAGCTGCTCTTTGAAATATCCTTCGAGACGCTCGTGAAGGTCTCGCCA
CCATCTCTCGATTTTGTTGCTAGTCGATTTTCCAAAGATAACAGAATCTA
TTGGATCATCAAAATCGCCAACTTGACCAATCAAATAAGCATGAATGGCA
GTCATAATTCCTGTTTCATTTCCTCTATCCACTCTTAAGTACCGTGGCAT
GTGTCTATATGTGTATAAAAAGTCGAAATATTTTCTACCGATAACGTTTG
GATCCGAGTTTGAAAAGATTACggtcaaaaaaacaatttttcttgAGAAA
GTATCCAAGGATCCGTAAATTCCAAGTGGAAACATCCAATTTTGATAGCC
ACATAATTTATCATGCCCATCCAGTGAAGCCAAGTTCCACGAGCCGTTTG
ATTGAAAAGGGCGTTTCTTaggtttctttttcttttcaagtcGGCGTGCT
TCCATTTGTTCCTGATTTTCATCCGTCATTACAGCATAGACAACGTCCCT
TGGTACTTGAATATTGTGGTATGTACGAAGCTTTTGGTTCATTGCACGAT
ACCCTAAAAGCTTTCCTGGACCTTCTAACTCATTCCTCACAGCTTCTTTG
ACACGGTCAATAGGTACACGATAATCAATGTAATTGATACCAAAATGTCT
CATACGTCTGTCTAAGCTCGACAGACTCCAAGGGTATTGAGGGTAATCCC
TTCTCATATAGTCAAGAACTTCCGTTCGTTGGAGATTCCTTTCAACGTAT
AATCTAATATCCTTTCCAAGCTGGTCATCATCTTTCCACTCTGtattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008671-exon-sc0000086-1491911889:631317..633331 | TCONS_00008671-exon-sc0000086-1491911889:631317..633331 | Clytia hemisphaerica | exon |
| TCONS_00008671-exon-sc0000086-1510915933:631317..633331 | TCONS_00008671-exon-sc0000086-1510915933:631317..633331 | Clytia hemisphaerica | exon |
| TCONS_00008671-exon-sc0000086-1575043694:631317..633331 | TCONS_00008671-exon-sc0000086-1575043694:631317..633331 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:631317..633331 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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