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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008667 ID=TCONS_00008667|Name=TCONS_00008667|organism=Clytia hemisphaerica|type=transcript|length=1996bp
ATTGATTATTACGTATGGAATTGTGCATTTAAAATGGATGTGGTTATTAC
TGACATTTGACGTTGAATTATTATGAATGAAATTGTGTATTTAAAGGTGG
ATGTGGTTATTATTGACATTTCATATGAAAGTTGATTAAAGTGGTGTCAA
TTTTAGCAAACGTTAGAAATACATTCAAAAGACGTACATAAATTCATGCT
GAAGGAGAGGAACGAAGTTTTGGTTGAATTGTTTAGGACCGAACTGTTTG
TTTGATCACTTGAATGGCTTGCAAGTAGCTGTAAAACCTATATTATGTTT
GCACGGTTGAACAaacattttgaaacatttcaagaaaaattcGGTTGATC
AAACATTGTTGAATGTAGTTGATTGATGTTTGTCTTGGTTGATCGAACAA
CCATCATGAACCCATTAAGAACCCATTAAGCTTTTCTCTGGCTCAGGAGT
TTTGATAATGGTtttgaaatcatcaaaaagtttatgagattttttttcgg
ctGAGAAGATAACCTTGAAGGAGCTGTTGGAGCATAACCTAAGGGAAAAA
TTTCCCAAAGGGAAAAAGAAGACGAAGCTAGCCAGGGAAATCACAAGGCA
AGAAAGAGAACTTCGAACGACGGAAAGGAAAATTCGAAGGCTGAGGTACT
TGGAGAAGAAGCAGAAAGATCTCGTTGGTGAAATTCAAGCAATATCTACA
TCATTGGAGCTGAGGGAGTACAAAAAACAAGTCCTCTAACAAGTTTACAC
TCAGCTGTCAACGTTTAGCTAACTTGTACTTGTTCCAAGTACTTACCTAG
CGTTCTGTTGATTACCTACGGACTTGGGGTTACTTCTTTTAAGAAGGAGT
TTACCCATTTAACCTTGTAGGGGCTGAGAAACATGATGTATTCCTTCGAC
GAAGATCCACCAGCATTGGAAGACGTGTTCCGAAATGAACTTTGGGATCT
TGTTTCGATCTTCACTGATGATATTATCATTTACAGTGACACCTTCGAGG
AGCACCTAGAGCATATCCAGACCGTACTCAAACGATTGCGGGACGCCGGA
TTGAAAACGAAGCGAAAGAAGTGTCACTTTTGTGTTCCAGTCTTCAACTT
CTTGGGTCATGAAGTGTCAGTGGAAGGGATCAAGCCAAAGGTCGATAACG
TCAGGAAGCTTTTGGACGCCAAGAAGCCAAAAACGACCAAAGAAGTCCAG
TCATTCCTAGGGCTGACGGACTATTATCCTCGCTTTGTTCCTGGGTACTC
GGAGATCGCCAGACCTCTTTACAAGTGCATCCCAAAATTTCAGTGGGGAG
AAGAGCAAGACAAAGCCTGGCAAACCCtaattgaaaaattgataaaccCG
CCCTTGTTGGAGTTCCCGGATTTCAACAAAGAGTTCATCCTCAACACAGA
TGCTTCTGGGTTGGCTTTTGGGTACGTGCTGTCACAGACTTCGGGTGATT
ATAAACCACATCCAATCAGATACGGAGGTAGGGTTTTGAGAAACGCAGAG
ATACGATACACGATCTCGGAGAAAGAGCTGCTGAGTTTGGTGTATGCAGT
GAGGGATTGCAGTCAATATCTCGAAGGACGTTTCTTCACCATATTTACGG
ATCATCAACCCCTGACTCATGCGTTGCGATTCCGCGATTCGAGTGGAAGC
TTGTCCAGATGGGCTGTTCTGCTACAGCAGTATTCTTTCGAGATCCGCTA
CAAGAGGGGAGCGAAGAACAGTGATGCAGATGCAATGTCGCGAGCTCCTA
TCCAATCTGTCTCTGAAGCATTCGTTGGGAGTGTTCGACTTGTGCCCACG
ACGGAGATAGCCGCAGAACAAGAGTGTGACCGACCATAATGAAAGTACTT
TTGAGAGTTTGGGGACCAAACTTCCCGTTGGCGGAGGTGTTGTCACGTGA
TGAACTGTGGAAAGCCACTATGCACATATTGTGCATTTTCAAACGAAATA
CGAAAACAGACAAACGAACGGGGTCTTTCAAACTGCCTCTGATCGA Run BLAST on NCBI protein sequence of TCONS_00008667-protein >TCONS_00008667-protein ID=TCONS_00008667-protein|Name=TCONS_00008667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MMYSFDEDPPALEDVFRNELWDLVSIFTDDIIIYSDTFEEHLEHIQTVLK
RLRDAGLKTKRKKCHFCVPVFNFLGHEVSVEGIKPKVDNVRKLLDAKKPK
TTKEVQSFLGLTDYYPRFVPGYSEIARPLYKCIPKFQWGEEQDKAWQTLI
EKLINPPLLEFPDFNKEFILNTDASGLAFGYVLSQTSGDYKPHPIRYGGR
VLRNAEIRYTISEKELLSLVYAVRDCSQYLEGRFFTIFTDHQPLTHALRF
RDSSGSLSRWAVLLQQYSFEIRYKRGAKNSDADAMSRAPIQSVSEAFVGS
VRLVPTTEIAAEQECDRP Run BLAST on NCBI transcript from alignment at sc0000086:582781..584776 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008667 ID=TCONS_00008667|Name=TCONS_00008667|organism=Clytia hemisphaerica|type=transcript|length=1996bp|location=Sequence derived from alignment at sc0000086:582781..584776 (Clytia hemisphaerica)
TCGATCAGAGGCAGTTTGAAAGACCCCGTTCGTTTGTCTGTTTTCGTATT
TCGTTTGAAAATGCACAATATGTGCATAGTGGCTTTCCACAGTTCATCAC
GTGACAACACCTCCGCCAACGGGAAGTTTGGTCCCCAAACTCTCAAAAGT
ACTTTCATTATGGTCGGTCACACTCTTGTTCTGCGGCTATCTCCGTCGTG
GGCACAAGTCGAACACTCCCAACGAATGCTTCAGAGACAGATTGGATAGG
AGCTCGCGACATTGCATCTGCATCACTGTTCTTCGCTCCCCTCTTGTAGC
GGATCTCGAAAGAATACTGCTGTAGCAGAACAGCCCATCTGGACAAGCTT
CCACTCGAATCGCGGAATCGCAACGCATGAGTCAGGGGTTGATGATCCGT
AAATATGGTGAAGAAACGTCCTTCGAGATATTGACTGCAATCCCTCACTG
CATACACCAAACTCAGCAGCTCTTTCTCCGAGATCGTGTATCGTATCTCT
GCGTTTCTCAAAACCCTACCTCCGTATCTGATTGGATGTGGTTTATAATC
ACCCGAAGTCTGTGACAGCACGTACCCAAAAGCCAACCCAGAAGCATCTG
TGTTGAGGATGAACTCTTTGTTGAAATCCGGGAACTCCAACAAGGGCGgg
tttatcaatttttcaattaGGGTTTGCCAGGCTTTGTCTTGCTCTTCTCC
CCACTGAAATTTTGGGATGCACTTGTAAAGAGGTCTGGCGATCTCCGAGT
ACCCAGGAACAAAGCGAGGATAATAGTCCGTCAGCCCTAGGAATGACTGG
ACTTCTTTGGTCGTTTTTGGCTTCTTGGCGTCCAAAAGCTTCCTGACGTT
ATCGACCTTTGGCTTGATCCCTTCCACTGACACTTCATGACCCAAGAAGT
TGAAGACTGGAACACAAAAGTGACACTTCTTTCGCTTCGTTTTCAATCCG
GCGTCCCGCAATCGTTTGAGTACGGTCTGGATATGCTCTAGGTGCTCCTC
GAAGGTGTCACTGTAAATGATAATATCATCAGTGAAGATCGAAACAAGAT
CCCAAAGTTCATTTCGGAACACGTCTTCCAATGCTGGTGGATCTTCGTCG
AAGGAATACATCATGTTTCTCAGCCCCTACAAGGTTAAATGGGTAAACTC
CTTCTTAAAAGAAGTAACCCCAAGTCCGTAGGTAATCAACAGAACGCTAG
GTAAGTACTTGGAACAAGTACAAGTTAGCTAAACGTTGACAGCTGAGTGT
AAACTTGTTAGAGGACTTGTTTTTTGTACTCCCTCAGCTCCAATGATGTA
GATATTGCTTGAATTTCACCAACGAGATCTTTCTGCTTCTTCTCCAAGTA
CCTCAGCCTTCGAATTTTCCTTTCCGTCGTTCGAAGTTCTCTTTCTTGCC
TTGTGATTTCCCTGGCTAGCTTCGTCTTCTTTTTCCCTTTGGGAAATTTT
TCCCTTAGGTTATGCTCCAACAGCTCCTTCAAGGTTATCTTCTCagccga
aaaaaaatctcataaactttttgatgatttcaaaACCATTATCAAAACTC
CTGAGCCAGAGAAAAGCTTAATGGGTTCTTAATGGGTTCATGATGGTTGT
TCGATCAACCAAGACAAACATCAATCAACTACATTCAACAATGTTTGATC
AACCgaatttttcttgaaatgtttcaaaatgttTGTTCAACCGTGCAAAC
ATAATATAGGTTTTACAGCTACTTGCAAGCCATTCAAGTGATCAAACAAA
CAGTTCGGTCCTAAACAATTCAACCAAAACTTCGTTCCTCTCCTTCAGCA
TGAATTTATGTACGTCTTTTGAATGTATTTCTAACGTTTGCTAAAATTGA
CACCACTTTAATCAACTTTCATATGAAATGTCAATAATAACCACATCCAC
CTTTAAATACACAATTTCATTCATAATAATTCAACGTCAAATGTCAGTAA
TAACCACATCCATTTTAAATGCACAATTCCATACGTAATAATCAAT Coding sequence (CDS) from alignment at sc0000086:582781..584776 >TCONS_00008667 ID=TCONS_00008667|Name=TCONS_00008667|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at sc0000086:582781..584776 (Clytia hemisphaerica)
TTATGGTCGGTCACACTCTTGTTCTGCGGCTATCTCCGTCGTGGGCACAA
GTCGAACACTCCCAACGAATGCTTCAGAGACAGATTGGATAGGAGCTCGC
GACATTGCATCTGCATCACTGTTCTTCGCTCCCCTCTTGTAGCGGATCTC
GAAAGAATACTGCTGTAGCAGAACAGCCCATCTGGACAAGCTTCCACTCG
AATCGCGGAATCGCAACGCATGAGTCAGGGGTTGATGATCCGTAAATATG
GTGAAGAAACGTCCTTCGAGATATTGACTGCAATCCCTCACTGCATACAC
CAAACTCAGCAGCTCTTTCTCCGAGATCGTGTATCGTATCTCTGCGTTTC
TCAAAACCCTACCTCCGTATCTGATTGGATGTGGTTTATAATCACCCGAA
GTCTGTGACAGCACGTACCCAAAAGCCAACCCAGAAGCATCTGTGTTGAG
GATGAACTCTTTGTTGAAATCCGGGAACTCCAACAAGGGCGggtttatca
atttttcaattaGGGTTTGCCAGGCTTTGTCTTGCTCTTCTCCCCACTGA
AATTTTGGGATGCACTTGTAAAGAGGTCTGGCGATCTCCGAGTACCCAGG
AACAAAGCGAGGATAATAGTCCGTCAGCCCTAGGAATGACTGGACTTCTT
TGGTCGTTTTTGGCTTCTTGGCGTCCAAAAGCTTCCTGACGTTATCGACC
TTTGGCTTGATCCCTTCCACTGACACTTCATGACCCAAGAAGTTGAAGAC
TGGAACACAAAAGTGACACTTCTTTCGCTTCGTTTTCAATCCGGCGTCCC
GCAATCGTTTGAGTACGGTCTGGATATGCTCTAGGTGCTCCTCGAAGGTG
TCACTGTAAATGATAATATCATCAGTGAAGATCGAAACAAGATCCCAAAG
TTCATTTCGGAACACGTCTTCCAATGCTGGTGGATCTTCGTCGAAGGAAT
ACATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008667-exon-sc0000086-1491911889:582781..584776 | TCONS_00008667-exon-sc0000086-1491911889:582781..584776 | Clytia hemisphaerica | exon |
| TCONS_00008667-exon-sc0000086-1510915933:582781..584776 | TCONS_00008667-exon-sc0000086-1510915933:582781..584776 | Clytia hemisphaerica | exon |
| TCONS_00008667-exon-sc0000086-1575043694:582781..584776 | TCONS_00008667-exon-sc0000086-1575043694:582781..584776 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:582781..584776 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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