TCONS_00008667-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008667-protein
Unique NameTCONS_00008667-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008667-protein ID=TCONS_00008667-protein|Name=TCONS_00008667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MMYSFDEDPPALEDVFRNELWDLVSIFTDDIIIYSDTFEEHLEHIQTVLK
RLRDAGLKTKRKKCHFCVPVFNFLGHEVSVEGIKPKVDNVRKLLDAKKPK
TTKEVQSFLGLTDYYPRFVPGYSEIARPLYKCIPKFQWGEEQDKAWQTLI
EKLINPPLLEFPDFNKEFILNTDASGLAFGYVLSQTSGDYKPHPIRYGGR
VLRNAEIRYTISEKELLSLVYAVRDCSQYLEGRFFTIFTDHQPLTHALRF
RDSSGSLSRWAVLLQQYSFEIRYKRGAKNSDADAMSRAPIQSVSEAFVGS
VRLVPTTEIAAEQECDRP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004867XLOC_004867Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008667TCONS_00008667Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 24..78
e-value: 2.2E-9
score: 37.1
NoneNo IPR availableGENE3D3.30.70.270coord: 84..208
e-value: 1.6E-34
score: 118.0
NoneNo IPR availableGENE3D3.30.70.270coord: 10..83
e-value: 2.4E-21
score: 75.3
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 169..289
e-value: 4.04079E-47
score: 155.728
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 12..274

Blast
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BLAST of TCONS_00008667-protein vs. Swiss-Prot (Human)
Match: RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.533e-16
Identity = 63/238 (26.47%), Postives = 105/238 (44.12%), Query Frame = 0 
Query:    3 YSFDEDPPALEDVFRNELWDLVSIFT----DDIIIYSDTFEEHLEHIQTVLKRLRDAGLKTKRKKCHFCVPVFNFLGHEVSVEGIKPKVDNVRKLLDAKKPKTTKEVQSFLGLTDYYPRFVPGYSEIARPLYKCIP---KFQWGEEQDKAWQTLIEKLINPPLLEFPDFNKEFILNTDASGLAFGYVLSQTSGDY-KPHPIRYGGRVLRNAEIRYTISEKELLSLVYAVRDCSQYLEG 232
            ++   DP   ++V    L D++  F      +++IYS + EEHL H++ VL R R   +     K  F      FLG  V+ +G+K   + +  +     P +   +++F+     Y  FV  +S IA PL + +    +F WG E+ +A++ L       PLL  P     F L T  +G A    L Q      K     +  R +   E+ Y+ +E ++L +  A     +YLE 
Sbjct:  703 FALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYLEN 940
The following BLAST results are available for this feature:
BLAST of TCONS_00008667-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTL13.533e-1626.47Retrotransposon-like protein 1 OS=Homo sapiens GN=... [more]
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