TCONS_00008590 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008590
Unique NameTCONS_00008590
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2203

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008590 ID=TCONS_00008590|Name=TCONS_00008590|organism=Clytia hemisphaerica|type=transcript|length=2203bp
aaatttaggaaaaagtctctcaaagggtcccaaaatcaccaaaattttgt
ctctcaaagggtcgattttctattttcggctcggacatacccgtcacctc
gcaaacctagtacccccccccgggcatcTCCCCCCTTTCGCCCCTTGCAT
TGCGTCTCTCTTCCTCTTCCGCATATTTCTTGTGCCGAGCTCAGCCTAAA
GCGCTGGTGCTCAGGCTAGCGTCAAAATATTAGTTAATATCCGTTAAAgt
gatattttttatgaatttagCCTGCGTATTTGCAGAATACTTAGTCAAAG
ACGAAAAAACAAGTCAAGGCTAAATCTAATATATCTTTTTAACATATGGG
AAATAGTTTTCGAACGAAATCAGACGTGGCACGCGAACCAAAACAAAACA
TAGCCAGCAGCTGGAAGAAATCTGCCTGGAGAAGTTGATTTTAGTTGAGA
TTTCCAGGAACAATGTCTCATAACGACATCATCCAGAAGGCTGAGGACTT
AGCTGATCAAGTTCTTAGACACTCAAAGCATGTTCTACCTCATCTTGCCC
GTTTTTGCTTGGTAGCAACCTTCTTTGAAGATGGAATTCGAATGTGGTTT
CAGTGGACCGAACAGAGAGATTACATTGATCATACATGGAATTGTGGAGC
CTTTATTGGAACattatttgttttgattaactTTCTAGGTCAATTGTCTG
GATGTTTTATGGTTTTAGGAAGAGTAAAGGTGGAAATTGCTGTTGGAGTT
CTGTTTGGAACAATTTTACTTCAGactcTGGCTTATCAGGTTTTCACTGA
TGTCAAGTTTTTCTTGAGGAGTCTTGCCCTGTCTGGTGGTTTGATTTTAT
TGTTGGCTGAATGTCGCCAAGAAGCTCGCACCGTTTTCGCTGGTGTCCCC
ACACTGGATAGTCACAACAAACCCAAAACATACATGCAACTGACTGGTCG
TGTTTTGTTACTCCTCATGTACCTCACTCTCTTGAAATTCGACATGTCTT
TCTTCCATATTGttttcaatctctttggtaCCATTTTGATTATGTTAGTT
ACCGTTGGTTACAAGACCAAGCTCTCCGCCCTTGTCATGGTTGTTTTCTT
AATGGGTATCAACGTATACGAAAATGCTTTCTGGATGGTGCCTCAATGGA
AAGCTATGCGTGATTTCTTGAAATACGATTTCTTCCAGACCATGTCAGTT
ATCGGCGGTCTCCTTTTGGTCGTCGCTTTTGGGCCCGGTGGCGCCAGTAT
GGATGAAGCTAAGAAAAGATGGTAATTTATTCAAACGTTGAAAAAAAGAC
ACTAAGATCTTTAAACACAGAATACAAATATCTATACAAAGTTTTAGCAT
GTTGAACAGAAGAATATCATAAATCTTCTGTATGAAATCCAAGAAGCACA
AAAAATAgacattttagaatttattattattattatgaatTTAGAGATTT
TATCCCAACTTattttttagtttagtttcttacattttgtcttGTATCTT
TTGagtctcaaaaacaaaattgaatggAAAGTTCCCACTGAAGGTTCATC
CTTTTGGTCTTAGGATTGTACAAATTCGAATTATTTATTCTTCAAGGCCT
TGCTTTTTATTCCTGCATCATTTAAAGAatgattgggcttttccagaaag
ttTTTGTACACGAgggatggaggatatattgaatattttgcCTGGGGATa
ttgaaaaatctgcaaaatttgcctgtttaagggtaattttgaatttccGG
GGTAAGATTTGTGTTGTCCGGTGGTCATAATTCACTATGTCTGGGAGGGG
GGtgcaccccccatattcaatttttttctggaaaagcccatttataggtt
ttaaaaacgcttaaatatcAGCTCGATTTCTTTTCTTGGgtttcattttt
tggaattgtattttgttttgacttttgatATTTAATTTTGTGGTCAATTT
AAATACAGTTATTTACAATTTATTTCTAAATAACTGTAAAATTATTATTG
tagggtaacaaaaatttttatacTTAGTATATTTGCTTATAATATctgaa
atattttgattataatattttactttttgggGTGTTCATTTAGATCATCT
AATATTGTAATAAAAATATGATGAAactaaatttgaaataagaagGAATG
GATTTATTTTAGACGATTTTTACCCAGTTTCCAAGTTACCAAAATTATAG
TCC
Run BLAST on NCBI

protein sequence of TCONS_00008590-protein

>TCONS_00008590-protein ID=TCONS_00008590-protein|Name=TCONS_00008590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MSHNDIIQKAEDLADQVLRHSKHVLPHLARFCLVATFFEDGIRMWFQWTE
QRDYIDHTWNCGAFIGTLFVLINFLGQLSGCFMVLGRVKVEIAVGVLFGT
ILLQTLAYQVFTDVKFFLRSLALSGGLILLLAECRQEARTVFAGVPTLDS
HNKPKTYMQLTGRVLLLLMYLTLLKFDMSFFHIVFNLFGTILIMLVTVGY
KTKLSALVMVVFLMGINVYENAFWMVPQWKAMRDFLKYDFFQTMSVIGGL
LLVVAFGPGGASMDEAKKRW
Run BLAST on NCBI

transcript from alignment at sc0000086:909926..918816+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008590 ID=TCONS_00008590|Name=TCONS_00008590|organism=Clytia hemisphaerica|type=transcript|length=8891bp|location=Sequence derived from alignment at sc0000086:909926..918816+ (Clytia hemisphaerica)
aaatttaggaaaaagtctctcaaagggtcccaaaatcaccaaaattttgt
ctctcaaagggtcgattttctattttcggctcggacatacccgtcacctc
gcaaacctagtacccccccccgggcatcTCCCCCCTTTCGCCCCTTGCAT
TGCGTCTCTCTTCCTCTTCCGCATATTTCTTGTGCCGAGCTCAGCCTAAA
GCGCTGGTGCTCAGGCTAGCGTCAAAATATTAGTTAATATCCGTTAAAgt
gatattttttatgaatttagCCTGCGTATTTGCAGAATACTTAGTCAAAG
ACGAAAAAACAAGTCAAGGCTAAATCTAATATATCTTTTTAACATATGGG
AAATAGTTTTCGAACGAAATCAGACGTGGCACGCGAACCAAAACAAAACA
TAGCCAGCAGCTGGAAGAAATCTGCCTGGAGAAGTTGATTTTAGTTGAGA
TTTCCAGGAACAATGTCTCATAACGACATCATCCAGAAGGCTGAGGACTT
AGCTGATCAAGTTCTTAGACACTCAAAGCATGTTCTACCTCATCTTGCCC
GTTTTTGCTTGGTAGCAACCTTCTTTGAAGATGGAATTCGAATGTGGTTT
CAGTGGACCGAACAGAGAGATTACATTGATCATACATGGAATTGTGGAGC
CTTTATTGGAACattatttgttttgattaactTTCTAGGTCAATTGTCTG
GATGTTTTATGGTTTTAGGAAGAGTAAAGGTGGAAATTGCTGTTGGAGTT
CTGTTTGGAACAATTTTACTTCAGGTAAAAAATCACCTCATTATAGTTTG
ATAGCCTCTAGCAGTGTGAATTTTTGCCCACTTGTGTAAAAGATTCAGTG
CTAAAAACTCCTAAGTATTTTAAAGTCCCGTCAACTGCTCTGACTTGGGA
CTACCGTTGGTCGAATgacgacatccctcttctaatttcgacacccttct
ttagagacaggattATTAGGAAGGTCGGGATCgctaatttttttctccaa
tagATCGCCAAGGAAAGaaaatagtttccatcagcCATTCCGACCTTCCT
GTAATTCCTATccttaaagaagggtgtcgaaattagaagagggatgtcga
cattagaccaacttacgatatctgacaaaacatgggacggcaaatcggcc
accatttcaccgaacctccaagtcatttgatttgagttaaggaacgaCGT
ATTAAAAATAACACAATTTGGCGGCTatctaaaatatgttccgttcgcgt
cgcccgaccgactcaccttcaaaacatGAATCCCGAGTCGGACAAGTCGG
AAAAAtgtcggaaaaagtttttgatagctAAGCACTTCTTTGAATCATCA
TTCGCTACGAGTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTACgagtttttatttacttaacccacatt
gagtcccgtttgagttttttcatgtacccttattgaaattatCAAGTCGA
AATTCGGCGAcgcggtagggccaataccccgagagccgaaaataaggtcc
gcTTTTAAGGTTCACACATGTGCGCGCACATTTAATCTggcaaatcaaag
atggcggcaagagATTTCGTTGATTGCTGACTTGATTCTTCAGGATTTCC
TAGATTTAAAAAACCcaacaaaatttactaccgactgaccgactggattt
gaagatgttttatgacgcgaacagaacatattttagattgtcgcctttct
ctttcgattttacagtatgTGAAAATGCAGATCAGATATGGCGGNNNNNN
NNNNNNNNNNNNNcgcatttttaacacccgttgtgACGCGAATAGAGCAT
TTTTTCAATGACCGCCTATGCAACAGACCCATATTTCGActaatcgtccc
aagttagagcagttgacggtactttCTACAaggcgtttactctttccttc
ccggGTTACCTTAATCAAGTTCAATAtcacctgaatcaagttcaataTCC
CAGGATAATTCTGgataattaattaaaacttgaaaacttgaaatgaaaaa
attataacCCATTGCTAAAGTGCAGCATTTCCGGGAAATGGCCTATCCAA
CCATCCactgatctttttcttgggaagttgttctttagattagttttcaa
ggttggcttggttcattttttctagttttttaaaatgttaatttcattta
aaagcaccagtttattttttcatgaatcccttgaGAAGGGTTGCGGCACA
TTTATTTGCTTGTGAGTCGAATAAACAATATAGCGCTtccgcagcattaa
tctttgatactcaTTTTGGTGAGATGCTAGTGTGACTCACTGGCTGGATG
GAGTAttcagttattcaaaagacgagaaaaaaagaaaatagcatcagtca
tctacaggatgtatttgaaaCAACAAGGATCACATTAATAAAGTTCAAGA
TCCTAAGACAATCAGATCAGATTGaaacggttagtgtaaaacgcaggtca
caggtcacaggtcacaggtcagtgttgacaggtcagcttcaattactgta
aaacacaaagaaaatgttataaaaacagttgttaatgtcaaaaatataat
ccctaaggtattttattgatctataactattttaaagctaaaaaactACC
CACGTGCTTACCACGTGATTTCGCATTTTACGctgtgtataacacggacc
tgtaatacttgtattatatattacatctgtatcacacatgtaaaaaactt
atcttttcaatgttatacgcatgttacgtatgttatatacaaagaataaa
gaaatactCGAATATCTATCTCACCTTTGCTTTAAACAGccccctaacag
gaaaatagctatttcaaaatcactatgtcatatctcattttatctcctgc
atcaccttgggtatgataacaagaattgatgaaaaaagcgtcaatgggat
tatattttatagatgctttgtatttttgataaaatgacgtcactattttc
atctctctaaaacagctctcttggagtatttattgttttcaaaacctgtc
aatctatatccacttgcagcgtcagcatcctattatgcatgaagagtatt
ttattgttaattggtgtacaaaacctcatactttgagataaccCTATTAT
TAATAACATAATtcaagtgtcatttgttgtcaatatttggggttgatgat
ttgtcgtttaaaagtcaacatattttgatattacatttccattacatatg
ATATTTAcaggaacttatgttatgagttgtatgttatgagttgtatgtta
cgagttgtatgttacgagtgcgttacagttttccggtctgtaatttgtat
gacctgtgaactgtgacccgtgacctgtgacctgtgacctgtgttttaca
ctaaccgagaTTGAAAGCTTGAAACAACAAAATGACAAATTGCTAAATAG
CAGAAGCCAGTTATTAATGGACTAAccaaaatttattatttaaCTCCCAA
GCTATCGTTTCGATTTGTTATGTCTGATGACacgctaaaataaaaataat
tccaCATGTAAATGTCAGCGTATGCCGTCTATCAAAATTTATGGAAAATA
GCCTGTTTTGTGGTGTTGGGATCTAGGTAGGTGTCTTCTCACCGATCGat
cttttggacctaccccggtggggtggaggtcctataaattcacctctgtc
cgttcgtccgtctgtctgtccgttcgttaccagcttttctcgagattgaa
tcataggagtcatttgatttttggtacaaaggtgcaaaacggtagtggcc
aaaatgtgacggagcccgattttcgaaaaaaaaattttttgagcaaattt
gggccaaaaaacggctaaaaaacaGGTTTTTTGGACTTTGTGAAAAATTG
GATCATTAAATTTTTTTGATTTTTTGCATGATAGTAGGGTACAatcatag
gtaaaagatggctcaagcagatttttgcaaaaaaatttatttggcttaaa
aaacgcatgtttatctataagaatcactattaattagcatacattaatgt
tcttagtcaaattactcaattcttttatgagatagatgttttttttgctc
acgagggcttacttttgaagcatatgtgtgtttagacatgaaattttggt
tgcttggcgtgtttttatagaaaaactggccaaattcaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcctcgaatgtgactgag
cccgattttcgaaaaaaaatgtttttgggcaaatttgggccaaaaaacgg
ctaaaaaaagggttttttggacttcgtgaaatattggatcgatgtttttt
tctgattttttgcatgaaagtaggtaaaagatgggtcaagcagatttttg
taaaaaaacttttcagctcaaaaaacgcatctttatctNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaacgc
atctttatcaataagaatcactattaataagcatacatcaatgttcttag
ccaaattactcaattttttgatgagatagatgtctttttatgctcacgaa
gtcttgaatatgaaagaatatttcaagagcatgaaattttggtttcaaaa
catttttttataagaaacaaacgacttattttaataaatcgtcactattt
gtgttctgaaagattttcaacgttcatgctcacgtagatatcaattatat
atgtgttaaatgcataaccaggtaggtccataaaagtatcacttgtttct
tgAAAAATTGGCATTTGTCAAATAATTTTATCTATGGCTAAAATTTAGGT
CATTTCTCtaagtttttggacctacctggaggtcctataaattaacctgt
gttcgtccgtccgtccgtctgttaccagcttttctagagattggctcatt
agttttttctgatttttggcacaaagatggaaaatggcaatgcccaaaat
gtgatggagcctgattttcgaagaaaaataattttccgaccgaaaatgcc
agaaatacgCCGGGagaaccggttttttgacattttctcgagatttcatc
attagttttttctgattttttgcttaaagatgcgtattaacaatgcccaa
aacatggctgagtccgatttttgagaatttttttcggccaaaaatgctgg
aaatatgctggaaatcaccgtttttctagattttcattacactttttcct
tataaatggttgttttttcattcataaATATTATTAATAgtaatgcccac
catcaagcatgtttcaattttcaataaaattgatttttgaagccggaact
atttaaaaatcgctgtaacaacctattttcgccggaaagacagtatttct
tgaatttctcaagctgtactttatatttttttatgaaattttgcacactt
gtgtgaaatgacaatacctaaaatgtgacggagcccgattttcgaaaaac
atttttttccggctgaaaatgccggaaaaaccggttttttgacattttct
caaattttcatctttagttttttctgattttttgcagaaagatgcgtatt
tgcaatgctcaaaacatgacagagttcaattttttgagaaaatttttttt
ccggccaaaaatgccggaaatatgctggaaatcgccgttttttgcagatt
ttcactgggctttttcctaacatttctttgttttttctcaaaaaaaaaca
tcattgatagcaattcccaccatcaatcatgattcgattgtcaataaaac
tgatttttttataaaaaataaacgaCTAAtcttaatagatcgtcactatt
tgtgttctgaatgatagTTTAATGGTCACACTCACGATGTtaattatatg
tgttaaatgcataaccagttaggtccataaaagtattacttgttctatgc
cagtttattttttcataaatcacaTTGAAGTGTTACGGTGTATTCTTTAG
CTCACGAGTCAAGTGAATGATAATGAATGATGTGTTTTTGCTGcataatc
tttgatacacatttcaGTCCAATGCTAATGTGACTATAgtgtagggggaa
atttgtaaaatcgttcgacttttttgaaaagtaattttttaacAGTTAGA
CCATAACTTTTTATCTAGTTGACTAaatttaacaaataacccctcaaaat
ttaagtttatccttcctttTTCATTGCCCCCGTcaccaatattttgcaaa
gtatttttttttttactttgaaaaatcttatatataccgtttagaggggt
gaaataagggcaAAACTTCGAacattttcttcgtcgcccaaccatggtgg
gcgacaaatatttttggccccctcaattcgatgCGCACGCCGGGGCCATG
TTTTTCCAATGCGAAAGGATTGATGTTTATTATAAGAACttgtttttaaa
ttcaatttttaggaaTATACAAGGAATGTTTTATCattgttctttttctt
ttttagactcTGGCTTATCAGGTTTTCACTGATGTCAAGTTTTTCTTGAG
GTGAGAATTTTACTACTTTACTACATCCGAGGGGGAGGAGTGCAAGGCAT
ACGAGGTGGcgagactgaatttcgaaaaatttaccACTTGACGTTTTTAT
GACTCTGTGAGAAACCattattttcagcaaaaattttcaaactttagtcC
AAATTACTAGAATTAGGGCACCTGTGAAGGATCCAATTTgttaaattttg
taatttttagttAGACCCTTCAGAGACTCAATGCTGTTTTATGGGTTTTG
TACCCCTTATTGGAGACTTTCTACTGTGTAAAAAAGGAACCCTGATGGCT
CACACCTACGGACACCCATCGGCAACTTGATTTTGACTCtggattttttt
tactttctttgaTCCATATTTTTACCCACCCATCCTAAtccaataataat
aatacttcAAGGAAAGCAAATAAAAAAGTACACATTTCTTAGATATTTAT
AAATTAAGTCGGTAGGCCAAAATGTGCATGTAAATTCATTGGGATTTCAG
TGTCACCATTTTATATACTCATAACAATATAAGTATCTTGTTTTTAAGTC
TATATTTTGGCCTGGCTATACTTATTCAATTATCTTACTTGTATAATGAA
AATATGTGTCATTAgcattttaaatctttaaaattatttgtttACGTTTT
CAGGAGTCTTGCCCTGTCTGGTGGTTTGATTTTATTGTTGGCTGAATGTC
GCCAAGAAGCTCGCACCGTTTTCGCTGGTGTCCCCACACTGGATAGTCAC
AACAAACCCAAAACATACATGCAACTGACTGGTCGTGTTTTGTTACTCCT
CATGTACCTCACTCTCTTGAAATTCGACATGTCTTTCTTCCATATTGttt
tcaatctctttggtaCCATTTTGATTATGTTAGTTACCGTTGGTTACAAG
ACCAAGCTCTCCGCCCTTGTCATGGTTGTTTTCTTAATGGGTATCAACGT
ATACGAAAATGCTTTCTGGATGGTGCCTCAATGGAAAGCTATGCGTGATT
TCTTGAAATACGATTTCTTCCAGACCATGTCAGTTATCGGCGGTCTCCTT
TTGGTCGTCGCTTTTGGGCCCGGTGGCGCCAGTATGGATGAAGCTAAGAA
AAGATGGTAATTTATTCAAACGTTGAAAAAAAGACACTAAGATCTTTAAA
CACAGAATACAAATATCTATACAAAGTTTTAGCATGTTGAACAGAATATC
ATCATAAATCTTCTGTNAATATCTATACAAAGTTTTAGCATGTTGAACAG
AATATCATAAATCTTCTGTATGAAATCCAAGAAGCACAAAAAATAgacat
tttagaatttattattattattatgaatTTAGAGATTTTATCCCAACTTa
ttttttagtttagtttcttacattttgtcttGTATCTTTTGagtctcaaa
aacaaaattgaatggAAAGTTCCCACTGAAGGTTCATCCTTTTGGTCTTA
GGATTGTACAAATTCGAATTATTTATTCTTCAAGGCCTTGCTTTTTATTC
CTGCATCATTTAAAGAatgattgggcttttccagaaagttTTTGTACACG
AgggatggaggatatattgaatattttgcCTGGGGATattgaaaaatctg
caaaatttgcctgtttaagggtaattttgaatttccGGGGTAAGATTTGT
GTTGTCCGGTGGTCATAATTCACTATGTCTGGGAGGGGGGtgcacccccc
atattcaatttttttctggaaaagcccatttataggttttaaaaacgctt
aaatatcAGCTCGATTTCTTTTCTTGGgtttcattttttggaattgtatt
ttgttttgacttttgatATTTAATTTTGTGGTCAATTTAAATACAGTTAT
TTACAATTTATTTCTAAATAACTGTAAAATTATTATTGtagggtaacaaa
aatttttatacTTAGTATATTTGCTTATAATATctgaaatattttgatta
taatattttactttttgggGTGTTCATTTAGATCATCTAATATTGTAATA
AAAATATGATGAAactaaatttgaaataagaagGAATGGATTTATTTTAG
ACGATTTTTACCCAGTTTCCAAGTTACCAAAATTATAGTCC

Coding sequence (CDS) from alignment at sc0000086:909926..918816+

>TCONS_00008590 ID=TCONS_00008590|Name=TCONS_00008590|organism=Clytia hemisphaerica|type=CDS|length=2439bp|location=Sequence derived from alignment at sc0000086:909926..918816+ (Clytia hemisphaerica)
ATGTCTCATAACGACATCATCCAGAAGGCTGAGGACTTAGCTGATCAAGT
TCTTAGACACTCAAAGCATGTTCTACCTCATCTTGCCCGTTTTTGCTTGG
TAGCAACCTTCTTTGAAGATGGAATTCGAATGTGGTTTCAGTGGACCGAA
CAGAGAGATTACATTGATCATACATGGAATTGTGGAGCCTTTATTGGAAC
attatttgttttgattaactTTCTAGGTCAATTGTCTGGATGTTTTATGG
TTTTAGGAAGAGTAAAGGTGGAAATTGCTGTTGGAGTTCTGTTTGGAACA
ATTTTACTTCAGactcTGGCTTATCAGGTTTTCACTGATGTCAAGTTTTT
CTTGAGGAGTCTTGCCCTGTCTGGTGGTTTGATTTTATTGTTGGCTGAAT
GTCGCCAAGAAGCTCGCACCGTTTTCGCTGGTGTCCCCACACTGGATAGT
CACAACAAACCCAAAACATACATGCAACTGACTGGTCGTGTTTTGTTACT
CCTCATGTACCTCACTCTCTTGAAATTCGACATGTCTTTCTTCCATATTG
ttttcaatctctttggtaCCATTTTGATTATGTTAGTTACCGTTGGTTAC
AAGACCAAGCTCTCCGCCCTTGTCATGGTTGTTTTCTTAATGGGTATCAA
CGTATACGAAAATGCTTTCTGGATGGTGCCTCAATGGAAAGCTATGCGTG
ATTTCTTGAAATACGATTTCTTCCAGACCATGTCAGTTATCGGCGGTCTC
CTTTTGGTCGTCGCTTTTGGGCCCGGTGGCGCCAGTATGGATGAAGCTAA
GAAAAGATGGTAAATGTCTCATAACGACATCATCCAGAAGGCTGAGGACT
TAGCTGATCAAGTTCTTAGACACTCAAAGCATGTTCTACCTCATCTTGCC
CGTTTTTGCTTGGTAGCAACCTTCTTTGAAGATGGAATTCGAATGTGGTT
TCAGTGGACCGAACAGAGAGATTACATTGATCATACATGGAATTGTGGAG
CCTTTATTGGAACattatttgttttgattaactTTCTAGGTCAATTGTCT
GGATGTTTTATGGTTTTAGGAAGAGTAAAGGTGGAAATTGCTGTTGGAGT
TCTGTTTGGAACAATTTTACTTCAGactcTGGCTTATCAGGTTTTCACTG
ATGTCAAGTTTTTCTTGAGGAGTCTTGCCCTGTCTGGTGGTTTGATTTTA
TTGTTGGCTGAATGTCGCCAAGAAGCTCGCACCGTTTTCGCTGGTGTCCC
CACACTGGATAGTCACAACAAACCCAAAACATACATGCAACTGACTGGTC
GTGTTTTGTTACTCCTCATGTACCTCACTCTCTTGAAATTCGACATGTCT
TTCTTCCATATTGttttcaatctctttggtaCCATTTTGATTATGTTAGT
TACCGTTGGTTACAAGACCAAGCTCTCCGCCCTTGTCATGGTTGTTTTCT
TAATGGGTATCAACGTATACGAAAATGCTTTCTGGATGGTGCCTCAATGG
AAAGCTATGCGTGATTTCTTGAAATACGATTTCTTCCAGACCATGTCAGT
TATCGGCGGTCTCCTTTTGGTCGTCGCTTTTGGGCCCGGTGGCGCCAGTA
TGGATGAAGCTAAGAAAAGATGGTAAATGTCTCATAACGACATCATCCAG
AAGGCTGAGGACTTAGCTGATCAAGTTCTTAGACACTCAAAGCATGTTCT
ACCTCATCTTGCCCGTTTTTGCTTGGTAGCAACCTTCTTTGAAGATGGAA
TTCGAATGTGGTTTCAGTGGACCGAACAGAGAGATTACATTGATCATACA
TGGAATTGTGGAGCCTTTATTGGAACattatttgttttgattaactTTCT
AGGTCAATTGTCTGGATGTTTTATGGTTTTAGGAAGAGTAAAGGTGGAAA
TTGCTGTTGGAGTTCTGTTTGGAACAATTTTACTTCAGactcTGGCTTAT
CAGGTTTTCACTGATGTCAAGTTTTTCTTGAGGAGTCTTGCCCTGTCTGG
TGGTTTGATTTTATTGTTGGCTGAATGTCGCCAAGAAGCTCGCACCGTTT
TCGCTGGTGTCCCCACACTGGATAGTCACAACAAACCCAAAACATACATG
CAACTGACTGGTCGTGTTTTGTTACTCCTCATGTACCTCACTCTCTTGAA
ATTCGACATGTCTTTCTTCCATATTGttttcaatctctttggtaCCATTT
TGATTATGTTAGTTACCGTTGGTTACAAGACCAAGCTCTCCGCCCTTGTC
ATGGTTGTTTTCTTAATGGGTATCAACGTATACGAAAATGCTTTCTGGAT
GGTGCCTCAATGGAAAGCTATGCGTGATTTCTTGAAATACGATTTCTTCC
AGACCATGTCAGTTATCGGCGGTCTCCTTTTGGTCGTCGCTTTTGGGCCC
GGTGGCGCCAGTATGGATGAAGCTAAGAAAAGATGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004805XLOC_004805Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008590-proteinTCONS_00008590-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008590-exon-sc0000086-1491911889:909926..910699TCONS_00008590-exon-sc0000086-1491911889:909926..910699Clytia hemisphaericaexon
TCONS_00008590-exon-sc0000086-1510915933:909926..910699TCONS_00008590-exon-sc0000086-1510915933:909926..910699Clytia hemisphaericaexon
TCONS_00008590-exon-sc0000086-1575043694:909926..910699TCONS_00008590-exon-sc0000086-1575043694:909926..910699Clytia hemisphaericaexon
TCONS_00008590-exon-sc0000086-1491911889:916682..916725TCONS_00008590-exon-sc0000086-1491911889:916682..916725Clytia hemisphaericaexon
TCONS_00008590-exon-sc0000086-1510915933:916682..916725TCONS_00008590-exon-sc0000086-1510915933:916682..916725Clytia hemisphaericaexon
TCONS_00008590-exon-sc0000086-1575043694:916682..916725TCONS_00008590-exon-sc0000086-1575043694:916682..916725Clytia hemisphaericaexon
TCONS_00008590-exon-sc0000086-1491911889:917379..917920TCONS_00008590-exon-sc0000086-1491911889:917379..917920Clytia hemisphaericaexon
TCONS_00008590-exon-sc0000086-1510915933:917379..917920TCONS_00008590-exon-sc0000086-1510915933:917379..917920Clytia hemisphaericaexon
TCONS_00008590-exon-sc0000086-1575043694:917379..917920TCONS_00008590-exon-sc0000086-1575043694:917379..917920Clytia hemisphaericaexon
TCONS_00008590-exon-sc0000086-1491911889:917974..918816TCONS_00008590-exon-sc0000086-1491911889:917974..918816Clytia hemisphaericaexon
TCONS_00008590-exon-sc0000086-1510915933:917974..918816TCONS_00008590-exon-sc0000086-1510915933:917974..918816Clytia hemisphaericaexon
TCONS_00008590-exon-sc0000086-1575043694:917974..918816TCONS_00008590-exon-sc0000086-1575043694:917974..918816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:909926..918816 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
89.9924	95.0119	117.289	126.275	86.9637	69.3977	175.508	162.346	92.2378	123.77	85.8324	77.3575	55.9606	49.9089	79.4485	87.4394	97.759	84.3102	26.292	44.7389	58.1551	56.5348	87.056	85.1263	48.2151	26.6515	57.9788	43.9187	115.494	81.6045
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002995Surf4
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00008590 vs. Swiss-Prot (Human)
Match: SURF4 (Surfeit locus protein 4 OS=Homo sapiens GN=SURF4 PE=1 SV=3)

HSP 1 Score: 315.464 bits (807), Expect = 4.292e-101
Identity = 172/270 (63.70%), Postives = 209/270 (77.41%), Query Frame = 1 
Query:  463 MSHNDIIQKAEDLADQVLRHSKHVLPHLARFCLVATFFEDGIRMWFQWTEQRDYIDHTWNCGAFIGTLFVLINFLGQLSGCFMVLGRVKVEIAVGVLFGTILLQTLAYQVFTDVKFFXXXXXXXXXXXXXXXECRQEARTVFAGVPTLDSHNKPKTYMQLTGRVXXXXXXXXXXKFDMSFFHIVFNLFGTILIMLVTVGYKTKLSALVMVVFLMGINVYENAFWMVPQWKAMRDFLKYDFFQTMSVIGGLLLVVAFGPGGASMDEAKKRW 1272
            M  ND++  AED ADQ LR +K  LPH+AR CL++TF EDGIRMWFQW+EQRDYID TWNCG  + + FV +N LGQL+GC +VL R  V+ A   LFG I LQT+AY +  D+KF +R+LAL GGL+LLLAE R E +++FAGVPT+   + PK YMQL GRVLL+LM++TLL FD SFF IV N+ GT L++LV +G+KTKL+AL +VV+L  INVY NAFW +P +K M DFLKYDFFQTMSVIGGLLLVVA GPGG SMDE KK W
Sbjct:    1 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWNCGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAESRSEGKSMFAGVPTM-RESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVVALGPGGVSMDEKKKEW 269
The following BLAST results are available for this feature:
BLAST of TCONS_00008590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SURF44.292e-10163.70Surfeit locus protein 4 OS=Homo sapiens GN=SURF4 P... [more]
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