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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008509 ID=TCONS_00008509|Name=TCONS_00008509|organism=Clytia hemisphaerica|type=transcript|length=2181bp
ATGATGTTCTAACAAGCTTATTAGtttaagattttcaaggcaATCAGTTT
TGTACTACTTTTTCAATAGCAAAGTTcgtaaagataaaaaaaactatata
CCTTAGTACAATTATTTACTActtcaaaaagaaaactaaaTTTGCAGAAA
TAAGTAGAAATAAGTAGAAGTAAATGATCTATTCATTAAAAGTGTCAATA
ATTTCAACTTTTGTTCCTTTTTTGATATTGCATGGCCAACGACAAACAGG
ACATTTATTTTGTGCTCCTTCAAGAACAAGCCAATCATTTGCACATTTCT
GATGAAAAGAGTGCCCACAAGGTAAACCCAACAAAACATTCTGACACATG
TATTCTTCCAAGCAAATAACACAACTATTAACTTTGAAAACATGATCCGG
TATGGATGGTataggacaatttttttgacagCAGCGGCCTTGTTGATTTG
TTTTTTCATCTGAATTAGATCTTTCATCTTCTGTTTCATCAATCTTACAA
AAGGGAATCTGACTTAAATTTTCAACGCAATCTTTCTGCATTTTTATGCC
ATTACAATGCTTCCAAGTGGGTAGATCTTTGATATATTCTGTATACAAAT
CTGTAGGTAACCAAAGTTCAGTTGTAGATAATGTATGGAGGATTCTCTCG
ATTCCAGCTTCAAAGCGATAAATTCTTAAGGTTGGTGTAATATTTTGGAG
AGTTACTGTGATATTTCCCCTGATATCTTCAATATCATTTTGGAAGATTC
CAGAAAATGAGGTTTCATTTGAATCATTTCGAAACTTGAAGTGCAAATAA
CCAAGAAACACTCCATAGCCAATAAAGCCAGATAAAACAAGGTGTAGGTG
TTTTGTCAACTCCAGGAAATCCTGACGTAAAACTGCAGCAAAATTGGTGA
ACATTATATTTTGCAAGTTTTGAAGGCAGACTTCAACAATTGGTTGAACT
TGAGGCATGTAAAGTAATTTGATAAGTGGCAACCATATGGTAAcaagcaa
aatatttgaagTCGCAAAACCCCATATATAAAACAAAAGTCTCCTGAGTG
GACCACCCTTTTGCAAAGATACTTCAAACCAGCATGCCATGTTTAGTAAT
ATGACTGATGCAATGAAAATATCGTTAACTTCAGGATGAAGTGTTTTTAG
AAAGAGTTCTAAGCAAGAATATGTCATATTTTCTCCTTCATGATTTCCAT
AGCTGTATTTAGAGACTTTATTCATAGCCAAAATAttgtcattttcttta
tttttccctTTCAGCATATAAAACTTAATTCTTCCAGTGAACTTGATAGA
GAGTGCAGATATTGAGAGTGGAAGTTTCTGATTAGAGTTTGACCGGTAAA
CAAAATACATCGAGGGAACCAAATCCTTCTTTCTTTTCAACCTTTTGGCT
GGCCTTTCAACCAATTCGGATATTGAATGGACAGTTTTGACATGAGAATG
TAACCTTTTTTGAACCCAATTATACAGAGAAATTTTGGATGCTTTTGGAT
CGAAGACATGTACTGCAACTTTTCCTTTAGGATGGGAGCCTTTTGGCATT
GTCAACAAAACAGATTCTGATGTAATTTTATGAATTAAACAGAGTCTAAT
GTCCCTTGAGCATTTATATGTGCTTGTTCTAATTCCATTATTCCTAAAAC
TCTTTGAAAGCTTTTTCCATTCTCTGTTAAATCCATCTTTATGAGGGCTT
TGAGTTTGAGTTGAAGGAGGGATTACTTTTACAAGCCACACACTTGCTTT
TGTATCTTCAACTTTCTCGATAAATTGGCGATAATCTGGGATTTCTGTTG
TTTCTTCATCCTCGTCATttacttttttgacattttcttgttGATTTGAT
GCGTTACTTTGCTTGTTTCCATGTTCAAGTACTGGTTTGCTGCTAGCATC
ATCAAGAAGGACGCTGTTGAAGAGGTCAGAAAATGTTTTGTAAAAGcaag
caaaagttttttctcctTTCAGCGAAGAGACTCGAAACACGATgaatata
atgagaaaataagaTACCAGAAAGATAATCTTCAGGTAAAACATCTTAAT
GAGGACACCAGACAGCAACGTTGCCTCGAAAAGATTGCAAACCCTGCAAA
CGTCCTCCCATCCAACTTGTCTGCTTGGCGCACCGATGAGAAGCGAGAAA
cagtaaacttttttttcaacataaacaaaaa Run BLAST on NCBI protein sequence of TCONS_00008509-protein >TCONS_00008509-protein ID=TCONS_00008509-protein|Name=TCONS_00008509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=666bp
FVYVEKKVYCFSLLIGAPSRQVGWEDVCRVCNLFEATLLSGVLIKMFYLK
IIFLVSYFLIIFIVFRVSSLKGEKTFACFYKTFSDLFNSVLLDDASSKPV
LEHGNKQSNASNQQENVKKVNDEDEETTEIPDYRQFIEKVEDTKASVWLV
KVIPPSTQTQSPHKDGFNREWKKLSKSFRNNGIRTSTYKCSRDIRLCLIH
KITSESVLLTMPKGSHPKGKVAVHVFDPKASKISLYNWVQKRLHSHVKTV
HSISELVERPAKRLKRKKDLVPSMYFVYRSNSNQKLPLSISALSIKFTGR
IKFYMLKGKNKENDNILAMNKVSKYSYGNHEGENMTYSCLELFLKTLHPE
VNDIFIASVILLNMACWFEVSLQKGGPLRRLLFYIWGFATSNILLVTIWL
PLIKLLYMPQVQPIVEVCLQNLQNIMFTNFAAVLRQDFLELTKHLHLVLS
GFIGYGVFLGYLHFKFRNDSNETSFSGIFQNDIEDIRGNITVTLQNITPT
LRIYRFEAGIERILHTLSTTELWLPTDLYTEYIKDLPTWKHCNGIKMQKD
CVENLSQIPFCKIDETEDERSNSDEKTNQQGRCCQKNCPIPSIPDHVFKV
NSCVICLEEYMCQNVLLGLPCGHSFHQKCANDWLVLEGAQNKCPVCRWPC
NIKKGTKVEIIDTFNE Run BLAST on NCBI transcript from alignment at sc0000085:370325..372505 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008509 ID=TCONS_00008509|Name=TCONS_00008509|organism=Clytia hemisphaerica|type=transcript|length=2181bp|location=Sequence derived from alignment at sc0000085:370325..372505 (Clytia hemisphaerica)
tttttgtttatgttgaaaaaaaagtttactgTTTCTCGCTTCTCATCGGT
GCGCCAAGCAGACAAGTTGGATGGGAGGACGTTTGCAGGGTTTGCAATCT
TTTCGAGGCAACGTTGCTGTCTGGTGTCCTCATTAAGATGTTTTACCTGA
AGATTATCTTTCTGGTAtcttattttctcattatattcATCGTGTTTCGA
GTCTCTTCGCTGAAaggagaaaaaacttttgcttgCTTTTACAAAACATT
TTCTGACCTCTTCAACAGCGTCCTTCTTGATGATGCTAGCAGCAAACCAG
TACTTGAACATGGAAACAAGCAAAGTAACGCATCAAATCaacaagaaaat
gtcaaaaaagtaaATGACGAGGATGAAGAAACAACAGAAATCCCAGATTA
TCGCCAATTTATCGAGAAAGTTGAAGATACAAAAGCAAGTGTGTGGCTTG
TAAAAGTAATCCCTCCTTCAACTCAAACTCAAAGCCCTCATAAAGATGGA
TTTAACAGAGAATGGAAAAAGCTTTCAAAGAGTTTTAGGAATAATGGAAT
TAGAACAAGCACATATAAATGCTCAAGGGACATTAGACTCTGTTTAATTC
ATAAAATTACATCAGAATCTGTTTTGTTGACAATGCCAAAAGGCTCCCAT
CCTAAAGGAAAAGTTGCAGTACATGTCTTCGATCCAAAAGCATCCAAAAT
TTCTCTGTATAATTGGGTTCAAAAAAGGTTACATTCTCATGTCAAAACTG
TCCATTCAATATCCGAATTGGTTGAAAGGCCAGCCAAAAGGTTGAAAAGA
AAGAAGGATTTGGTTCCCTCGATGTATTTTGTTTACCGGTCAAACTCTAA
TCAGAAACTTCCACTCTCAATATCTGCACTCTCTATCAAGTTCACTGGAA
GAATTAAGTTTTATATGCTGAAagggaaaaataaagaaaatgacaaTATT
TTGGCTATGAATAAAGTCTCTAAATACAGCTATGGAAATCATGAAGGAGA
AAATATGACATATTCTTGCTTAGAACTCTTTCTAAAAACACTTCATCCTG
AAGTTAACGATATTTTCATTGCATCAGTCATATTACTAAACATGGCATGC
TGGTTTGAAGTATCTTTGCAAAAGGGTGGTCCACTCAGGAGACTTTTGTT
TTATATATGGGGTTTTGCGActtcaaatattttgcttgTTACCATATGGT
TGCCACTTATCAAATTACTTTACATGCCTCAAGTTCAACCAATTGTTGAA
GTCTGCCTTCAAAACTTGCAAAATATAATGTTCACCAATTTTGCTGCAGT
TTTACGTCAGGATTTCCTGGAGTTGACAAAACACCTACACCTTGTTTTAT
CTGGCTTTATTGGCTATGGAGTGTTTCTTGGTTATTTGCACTTCAAGTTT
CGAAATGATTCAAATGAAACCTCATTTTCTGGAATCTTCCAAAATGATAT
TGAAGATATCAGGGGAAATATCACAGTAACTCTCCAAAATATTACACCAA
CCTTAAGAATTTATCGCTTTGAAGCTGGAATCGAGAGAATCCTCCATACA
TTATCTACAACTGAACTTTGGTTACCTACAGATTTGTATACAGAATATAT
CAAAGATCTACCCACTTGGAAGCATTGTAATGGCATAAAAATGCAGAAAG
ATTGCGTTGAAAATTTAAGTCAGATTCCCTTTTGTAAGATTGATGAAACA
GAAGATGAAAGATCTAATTCAGATGAAAAAACAAATCAACAAGGCCGCTG
ctgtcaaaaaaattgtcctatACCATCCATACCGGATCATGTTTTCAAAG
TTAATAGTTGTGTTATTTGCTTGGAAGAATACATGTGTCAGAATGTTTTG
TTGGGTTTACCTTGTGGGCACTCTTTTCATCAGAAATGTGCAAATGATTG
GCTTGTTCTTGAAGGAGCACAAAATAAATGTCCTGTTTGTCGTTGGCCAT
GCAATATCAAAAAAGGAACAAAAGTTGAAATTATTGACACTTTTAATGAA
TAGATCATTTACTTCTACTTATTTCTACTTATTTCTGCAAAtttagtttt
ctttttgaagTAGTAAATAATTGTACTAAGGtatatagttttttttatct
ttacgAACTTTGCTATTGAAAAAGTAGTACAAAACTGATtgccttgaaaa
tcttaaaCTAATAAGCTTGTTAGAACATCAT Coding sequence (CDS) from alignment at sc0000085:370325..372505 >TCONS_00008509 ID=TCONS_00008509|Name=TCONS_00008509|organism=Clytia hemisphaerica|type=CDS|length=2001bp|location=Sequence derived from alignment at sc0000085:370325..372505 (Clytia hemisphaerica)
tttgtttatgttgaaaaaaaagtttactgTTTCTCGCTTCTCATCGGTGC
GCCAAGCAGACAAGTTGGATGGGAGGACGTTTGCAGGGTTTGCAATCTTT
TCGAGGCAACGTTGCTGTCTGGTGTCCTCATTAAGATGTTTTACCTGAAG
ATTATCTTTCTGGTAtcttattttctcattatattcATCGTGTTTCGAGT
CTCTTCGCTGAAaggagaaaaaacttttgcttgCTTTTACAAAACATTTT
CTGACCTCTTCAACAGCGTCCTTCTTGATGATGCTAGCAGCAAACCAGTA
CTTGAACATGGAAACAAGCAAAGTAACGCATCAAATCaacaagaaaatgt
caaaaaagtaaATGACGAGGATGAAGAAACAACAGAAATCCCAGATTATC
GCCAATTTATCGAGAAAGTTGAAGATACAAAAGCAAGTGTGTGGCTTGTA
AAAGTAATCCCTCCTTCAACTCAAACTCAAAGCCCTCATAAAGATGGATT
TAACAGAGAATGGAAAAAGCTTTCAAAGAGTTTTAGGAATAATGGAATTA
GAACAAGCACATATAAATGCTCAAGGGACATTAGACTCTGTTTAATTCAT
AAAATTACATCAGAATCTGTTTTGTTGACAATGCCAAAAGGCTCCCATCC
TAAAGGAAAAGTTGCAGTACATGTCTTCGATCCAAAAGCATCCAAAATTT
CTCTGTATAATTGGGTTCAAAAAAGGTTACATTCTCATGTCAAAACTGTC
CATTCAATATCCGAATTGGTTGAAAGGCCAGCCAAAAGGTTGAAAAGAAA
GAAGGATTTGGTTCCCTCGATGTATTTTGTTTACCGGTCAAACTCTAATC
AGAAACTTCCACTCTCAATATCTGCACTCTCTATCAAGTTCACTGGAAGA
ATTAAGTTTTATATGCTGAAagggaaaaataaagaaaatgacaaTATTTT
GGCTATGAATAAAGTCTCTAAATACAGCTATGGAAATCATGAAGGAGAAA
ATATGACATATTCTTGCTTAGAACTCTTTCTAAAAACACTTCATCCTGAA
GTTAACGATATTTTCATTGCATCAGTCATATTACTAAACATGGCATGCTG
GTTTGAAGTATCTTTGCAAAAGGGTGGTCCACTCAGGAGACTTTTGTTTT
ATATATGGGGTTTTGCGActtcaaatattttgcttgTTACCATATGGTTG
CCACTTATCAAATTACTTTACATGCCTCAAGTTCAACCAATTGTTGAAGT
CTGCCTTCAAAACTTGCAAAATATAATGTTCACCAATTTTGCTGCAGTTT
TACGTCAGGATTTCCTGGAGTTGACAAAACACCTACACCTTGTTTTATCT
GGCTTTATTGGCTATGGAGTGTTTCTTGGTTATTTGCACTTCAAGTTTCG
AAATGATTCAAATGAAACCTCATTTTCTGGAATCTTCCAAAATGATATTG
AAGATATCAGGGGAAATATCACAGTAACTCTCCAAAATATTACACCAACC
TTAAGAATTTATCGCTTTGAAGCTGGAATCGAGAGAATCCTCCATACATT
ATCTACAACTGAACTTTGGTTACCTACAGATTTGTATACAGAATATATCA
AAGATCTACCCACTTGGAAGCATTGTAATGGCATAAAAATGCAGAAAGAT
TGCGTTGAAAATTTAAGTCAGATTCCCTTTTGTAAGATTGATGAAACAGA
AGATGAAAGATCTAATTCAGATGAAAAAACAAATCAACAAGGCCGCTGct
gtcaaaaaaattgtcctatACCATCCATACCGGATCATGTTTTCAAAGTT
AATAGTTGTGTTATTTGCTTGGAAGAATACATGTGTCAGAATGTTTTGTT
GGGTTTACCTTGTGGGCACTCTTTTCATCAGAAATGTGCAAATGATTGGC
TTGTTCTTGAAGGAGCACAAAATAAATGTCCTGTTTGTCGTTGGCCATGC
AATATCAAAAAAGGAACAAAAGTTGAAATTATTGACACTTTTAATGAATA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008509-exon-sc0000085-1491911889:370325..372505 | TCONS_00008509-exon-sc0000085-1491911889:370325..372505 | Clytia hemisphaerica | exon |
| TCONS_00008509-exon-sc0000085-1510915933:370325..372505 | TCONS_00008509-exon-sc0000085-1510915933:370325..372505 | Clytia hemisphaerica | exon |
| TCONS_00008509-exon-sc0000085-1575043694:370325..372505 | TCONS_00008509-exon-sc0000085-1575043694:370325..372505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:370325..372505 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00008509 vs. Swiss-Prot (Human)
Match: RN103 (E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens GN=RNF103 PE=1 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 3.522e-65 Identity = 163/581 (28.06%), Postives = 271/581 (46.64%), Query Frame = -3
Query: 218 QFIEKVEDTKASVWLVKVIPPSTQTQSPHKDGFNREWKKLSKSFRNNGIRTSTYKCSRDIRLCLIHKITSESVLLTMPKGSHPKGKVAVHVFDPKASKIS-LYNWVQKRLHSHVKTVHSISELVERPAKRLKRKKDLVPSMYFVYRSNSNQKLPLSISALSIKFTGRIKFYMLKGKNKENDNILAMNKVSK------------YSYGNHEGENMTYSCLELFLKTLHPEVNDIFIASVILLNMACWFEVSLQKGGPLRRLLFYIWGFATSNILLVTIWLPLIKLLYMPQVQPIVEVCLQNLQNIMFTNFAAVLRQDFLELTKHLHLVLSGFIGYGVFLGYLHFKFRNDSNETSFSGIFQNDIEDIRGNITVTLQNITPTLRIYRFEAGIER----ILHTLSTTELWLPTDLYTEYIKDLPTWK-HCNGIKMQKDCVENLSQIPFCKIDETEDERSNSDEKT----------NQQG----------RCCQKNCPIP-----------------------SIPDHVFKVNSCVICLEEYMCQNVLLGLPCGHSFHQKCANDWLVLEGAQNKCPVCRWPCNIKK 1777
F E VEDTK +WLV+VI +SP + W+K+ K GIRT T+ CS D R C ++++++P+ S KGKV + + + ++ ++ W+ S +KT+++ L E K D +++ +N +Q P SALSIKFTGR++F + +N +N + + + Y YGNH GE ++ ++ FL++L PEVND+F+ S++L+N+ W ++ + +G ++R + I T N LL+ WLP++ L +P + E L+ L+ T A+ +R D++ + H L LS ++G+G+ + Y K R ++N + + + T L + + + + E+ + L L+ +LWL + T+YIK+LP W+ C G++ +++ E E+E+ + S EK N G C K C + P + CV+CLE + +L+GLPCGH FHQ C WL G ++ CPVCRWP KK
Sbjct: 106 HFYELVEDTKDGIWLVQVI---ANDRSPLVGKIH--WEKMVKKVSRFGIRTGTFNCSSDPRYCRRRGWVRSTLIMSVPQTSTSKGKVMLKEYSGRKIEVEHIFKWITAHAASRIKTIYNAEHLKEE-----WNKSDQYWLKIYLF-ANLDQP-PAFFSALSIKFTGRVEFIFVNVENWDNKSYMTDIGIYNMPSYILRTPEGIYRYGNHTGEFISLQAMDSFLRSLQPEVNDLFVLSLVLVNLMAWMDLFITQGATIKRFVVLISTLGTYNSLLIISWLPVLGFLQLPYLDSFYEYSLKLLRYSNTTTLASWVRADWMFYSSHPALFLSTYLGHGLLIDYFEKKRRRNNNNDEVNANNLEWLSSLWDWYTSYLFHPIASFQNFPVESDWDEDPDLFLERLAFPDLWLHPLIPTDYIKNLPMWRFKCLGVQSEEEMSEGSQDTE--NDSESENTDTLSSEKEVFEDKQSVLHNSPGTASHCDAEACSCANKYCQTSPCERKGRSYGSYNTNEDMEPDWLTWPADMLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLA--GGRHCCPVCRWPSYKKK 670
The following BLAST results are available for this feature:
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