|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008507 ID=TCONS_00008507|Name=TCONS_00008507|organism=Clytia hemisphaerica|type=transcript|length=1286bp
CTTAGagtttcaacaacaaaaaatacgacaaaaaaatcatcatctttgGG
AGGGAGCCTACAAATGCCAAGAACTAAACGTAACCTTAAGATGCAACTTC
AGCAGCTGCATAGTGGATCAATCAACAATCATATCAATATGGTTAACACC
AACACGACAGAACATTGTCAACATTCTCAATGGAACACTGCTGCTCCATC
CAACAAAAATGTATGCAACGATATGATTCCCCCAAAATCAAGTAGCACTC
CTTTCGATAGTAATGTCGATATTGAGGCAAACTCCGAAAAACTAGATCAT
AATCTTGAGTTTGTAGACTGTAATAACAACAATGAACTTGAATTCAAACC
GGATATTCACCAGCCACCaccgacaacaaaagaaacacaAAGATCCACCA
AGTGTACACAACAGCCAACAAACCACCTTCAATCTTGGGTTGATACCAAA
GTTGAAGTACCAATAAAATCTCCACCATCAGAGTCTAACATACAAAACCC
AACAAGCAGGTCAATGAAAACTTCTGACCCTGCCAACAAGTTGCAACATT
TTGATACACCTACTGCTGAACATCCAagaaacaaaatgataaaaacaaaT
ACCACTAACTGTGGTGTTTTAGCACCAGTTATTGTAGAAAGAAGCTCATA
TAATCAACCTCCGAGACCAGATCTCATCAGTCCTTCTCAAGGTAATAAGC
GCCATCAAGAAGAGCCAATGACATCGGCCTCAATGCACCGTCACTCGCCT
CCCACAGAAGTCGTTGACTGCAATGGAGAACGAACAGTAGTGGTCAATAC
TGGACCAAGCACGGATGATGAAGAATATGTACACACCATTTCACGGCTTT
TGAACGGAATCCCTGAATGCCAAGATAAAACTCAACTCAAATTCGAAATT
TACCATAACATACAAATGGTGAAACACTTCATTGAATCTAAAAGACATCA
GGGCGTCAATAGCGGCTATCAAATGTACGCCCACTATCCAACCTCTTTGA
TGATGGCAAACCCTCAGCAGGAAATGTACATGGGTGGTGGCTTTTCGCCT
CACGCAATTCCTGCACATGATATGCAATATGGATCAACATACAGAGCTCC
TCCAGCCAAACGAGGAAGAAGACCTTCTAAAGCCTCGAACTAAAGCTTTT
GAGTTTTAgcatgtttatatttttacagtAGAAAGGGGTACAGTATATcg
tgttaatatttttttaacaaaaacgacatcaagaatatttttactTCTAC
TTTTGTATATATATTCTTTCATAtaaccaaaaaaaa Run BLAST on NCBI protein sequence of TCONS_00008507-protein >TCONS_00008507-protein ID=TCONS_00008507-protein|Name=TCONS_00008507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
LRVSTTKNTTKKSSSLGGSLQMPRTKRNLKMQLQQLHSGSINNHINMVNT
NTTEHCQHSQWNTAAPSNKNVCNDMIPPKSSSTPFDSNVDIEANSEKLDH
NLEFVDCNNNNELEFKPDIHQPPPTTKETQRSTKCTQQPTNHLQSWVDTK
VEVPIKSPPSESNIQNPTSRSMKTSDPANKLQHFDTPTAEHPRNKMIKTN
TTNCGVLAPVIVERSSYNQPPRPDLISPSQGNKRHQEEPMTSASMHRHSP
PTEVVDCNGERTVVVNTGPSTDDEEYVHTISRLLNGIPECQDKTQLKFEI
YHNIQMVKHFIESKRHQGVNSGYQMYAHYPTSLMMANPQQEMYMGGGFSP
HAIPAHDMQYGSTYRAPPAKRGRRPSKASN Run BLAST on NCBI transcript from alignment at sc0000085:332926..334211 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008507 ID=TCONS_00008507|Name=TCONS_00008507|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at sc0000085:332926..334211 (Clytia hemisphaerica)
ttttttttggttaTATGAAAGAATATATATACAAAAGTAGAagtaaaaat
attcttgatgtcgtttttgttaaaaaaatattaacacgATATACTGTACC
CCTTTCTactgtaaaaatataaacatgcTAAAACTCAAAAGCTTTAGTTC
GAGGCTTTAGAAGGTCTTCTTCCTCGTTTGGCTGGAGGAGCTCTGTATGT
TGATCCATATTGCATATCATGTGCAGGAATTGCGTGAGGCGAAAAGCCAC
CACCCATGTACATTTCCTGCTGAGGGTTTGCCATCATCAAAGAGGTTGGA
TAGTGGGCGTACATTTGATAGCCGCTATTGACGCCCTGATGTCTTTTAGA
TTCAATGAAGTGTTTCACCATTTGTATGTTATGGTAAATTTCGAATTTGA
GTTGAGTTTTATCTTGGCATTCAGGGATTCCGTTCAAAAGCCGTGAAATG
GTGTGTACATATTCTTCATCATCCGTGCTTGGTCCAGTATTGACCACTAC
TGTTCGTTCTCCATTGCAGTCAACGACTTCTGTGGGAGGCGAGTGACGGT
GCATTGAGGCCGATGTCATTGGCTCTTCTTGATGGCGCTTATTACCTTGA
GAAGGACTGATGAGATCTGGTCTCGGAGGTTGATTATATGAGCTTCTTTC
TACAATAACTGGTGCTAAAACACCACAGTTAGTGGTAtttgtttttatca
ttttgtttctTGGATGTTCAGCAGTAGGTGTATCAAAATGTTGCAACTTG
TTGGCAGGGTCAGAAGTTTTCATTGACCTGCTTGTTGGGTTTTGTATGTT
AGACTCTGATGGTGGAGATTTTATTGGTACTTCAACTTTGGTATCAACCC
AAGATTGAAGGTGGTTTGTTGGCTGTTGTGTACACTTGGTGGATCTTtgt
gtttcttttgttgtcggtGGTGGCTGGTGAATATCCGGTTTGAATTCAAG
TTCATTGTTGTTATTACAGTCTACAAACTCAAGATTATGATCTAGTTTTT
CGGAGTTTGCCTCAATATCGACATTACTATCGAAAGGAGTGCTACTTGAT
TTTGGGGGAATCATATCGTTGCATACATTTTTGTTGGATGGAGCAGCAGT
GTTCCATTGAGAATGTTGACAATGTTCTGTCGTGTTGGTGTTAACCATAT
TGATATGATTGTTGATTGATCCACTATGCAGCTGCTGAAGTTGCATCTTA
AGGTTACGTTTAGTTCTTGGCATTTGTAGGCTCCCTCCcaaagatgatga
tttttttgtcgtattttttgttgttgaaactCTAAG Coding sequence (CDS) from alignment at sc0000085:332926..334211 >TCONS_00008507 ID=TCONS_00008507|Name=TCONS_00008507|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at sc0000085:332926..334211 (Clytia hemisphaerica)
TTAGTTCGAGGCTTTAGAAGGTCTTCTTCCTCGTTTGGCTGGAGGAGCTC
TGTATGTTGATCCATATTGCATATCATGTGCAGGAATTGCGTGAGGCGAA
AAGCCACCACCCATGTACATTTCCTGCTGAGGGTTTGCCATCATCAAAGA
GGTTGGATAGTGGGCGTACATTTGATAGCCGCTATTGACGCCCTGATGTC
TTTTAGATTCAATGAAGTGTTTCACCATTTGTATGTTATGGTAAATTTCG
AATTTGAGTTGAGTTTTATCTTGGCATTCAGGGATTCCGTTCAAAAGCCG
TGAAATGGTGTGTACATATTCTTCATCATCCGTGCTTGGTCCAGTATTGA
CCACTACTGTTCGTTCTCCATTGCAGTCAACGACTTCTGTGGGAGGCGAG
TGACGGTGCATTGAGGCCGATGTCATTGGCTCTTCTTGATGGCGCTTATT
ACCTTGAGAAGGACTGATGAGATCTGGTCTCGGAGGTTGATTATATGAGC
TTCTTTCTACAATAACTGGTGCTAAAACACCACAGTTAGTGGTAtttgtt
tttatcattttgtttctTGGATGTTCAGCAGTAGGTGTATCAAAATGTTG
CAACTTGTTGGCAGGGTCAGAAGTTTTCATTGACCTGCTTGTTGGGTTTT
GTATGTTAGACTCTGATGGTGGAGATTTTATTGGTACTTCAACTTTGGTA
TCAACCCAAGATTGAAGGTGGTTTGTTGGCTGTTGTGTACACTTGGTGGA
TCTTtgtgtttcttttgttgtcggtGGTGGCTGGTGAATATCCGGTTTGA
ATTCAAGTTCATTGTTGTTATTACAGTCTACAAACTCAAGATTATGATCT
AGTTTTTCGGAGTTTGCCTCAATATCGACATTACTATCGAAAGGAGTGCT
ACTTGATTTTGGGGGAATCATATCGTTGCATACATTTTTGTTGGATGGAG
CAGCAGTGTTCCATTGAGAATGTTGACAATGTTCTGTCGTGTTGGTGTTA
ACCATATTGATATGATTGTTGATTGATCCACTATGCAGCTGCTGAAGTTG
CATCTTAAGGTTACGTTTAGTTCTTGGCATTTGTAGGCTCCCTCCcaaag
atgatgatttttttgtcgtattttttgttgttgaaactCTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008507-exon-sc0000085-1491911889:332926..334211 | TCONS_00008507-exon-sc0000085-1491911889:332926..334211 | Clytia hemisphaerica | exon |
| TCONS_00008507-exon-sc0000085-1510915933:332926..334211 | TCONS_00008507-exon-sc0000085-1510915933:332926..334211 | Clytia hemisphaerica | exon |
| TCONS_00008507-exon-sc0000085-1575043694:332926..334211 | TCONS_00008507-exon-sc0000085-1575043694:332926..334211 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:332926..334211 . |
Blast
The following BLAST results are available for this feature:
|
