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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008390 ID=TCONS_00008390|Name=TCONS_00008390|organism=Clytia hemisphaerica|type=transcript|length=2797bp
AAAGAGAGTACAGAACCTAGACTGCTGTTATCTCAACAAAATGGTGGCCA
AAACCCAGCAAACAGTTTCCAGGAAGACTCGAGGTAAACCAAAATCTGGA
CGGGTTTGGAAATCTCAAGGGCAAAAGAAATCCACTATGATCAACGTCAA
ATCTTTACATCCGTCATGGAGCAAAAGATCTAAAGAGCGTGCAGAACGAG
AATCTGTAAAGAAATATCAAAAGGAACTGAAACTTTCTTGCCATTGCAGT
ggagaaagaagaaaaacggATAAGGATTGAAGAGAATCGAAGACGTAGAG
AAGAAAATGCTAAGAAAGctgaaattgttcaaaaaattactgattcatca
aaaattaaacgaatgaaaaagaaacaattGCGACTAATTGAAAAGCGCTA
ATGCTCATTCCCCTAGAAGATTATTTGACAAAAAAGTGTACAAAGACATG
GTTCACTAAATAGAAAGATGGAAGTGGAAACACAGAAGTTATAAAGATGC
GTTTGTTGACGAAATGGAAAGGGTGTGGAACTAGGAACGAAAGAAACCTC
AATTCACAAAACGGAACTAGTCTTTATTATTTACGAGAGTTGACCCAGGT
CGCCTTTAATTATGAACTTTACCAACAAATCAGAGTGATGTTAATTTTCG
AATATCATGTCACATTCCTTTGACCCGCATTCAGAAATACCATGACCATT
TTTGTGCAACAGTGCAACAGTCTACTTCTGTTtgcaaaagaaataatttt
ttgaaaaatcttttaactAAACCATTAAGTGATTTATTACTGGTAGTTTG
GTACTGACTTCTTTTCatactttttgaatttaaattgtCAAGGCAGGTTG
CTACTTATTGTTCTAACCTATACCATTCTTTTTCTGTctgttttataaaa
taaaataagatgCTTCAAACTTGAATCTAATACGATCTTTAATATTAGTT
ATTTTTGAATGGTTTTAGATTTTAAGGattcatttttgtaaaatcagctT
TATAAATTTGTTTCATATTATTGAAGTGAAATATCAGACATAAATGTTGA
AGTAAAGAGTTTTTCTTCGTTTTGATTACATGATTGAGCAACATttaatt
tttgtccatttttcttctttctttcaatagataaataatataaaatgacA
TCCTCAGTGACGCAGCTTACAAGATCAATATTCAGAAAAAGTGGTAAAAT
TTTATCAAGGCACACAACTTCAAAACGCTTGTTCCATTCCACTCTGCCAG
TTCTCTCAGATCGCATCGAGAAACATACAGTACAAGATGCATCTACCTTC
TTGAATAACATGCTACTCCAATGTAAAGGAGCTGCCATATTTGCCGGGAC
TGGTCAATATCACGAAGAGAAAAACCAAGATCGTTTAGTGATGTTGAATT
TCGTGGATGATTTTCTTCAAGATTcatcaatcaatgtttttgacAGCCaa
gaacttttggattgttgtTTAAGAGATTCTGATGTTGATTTATTGATCAA
TAGTTTGAAAGCTCACTCCAAATTTCCGGTGTATAATGGTGAATTGGATA
TAGTGGATACTTCTTCCTGGCAGCATGGCTTCACATTGAAACCGTTCAGT
ATATTTACACCAGTGGAACGCATTCTCTTATTCAACGATGGGAAACTGTA
TGTTAATACCTTAGGAGATGTGCAAACTGTTCCCATTGAGGATATAGAGT
ATGTCGGGCTCTGGGTTTCAGACGAACCATATAATGAACGTCGCTTACTT
CTTGGCTTGAaaggacttcaaacaaaaatgttGTTGAGTTTGGAACGTGA
TTTAGTACACTGCGACATGGCCAAATTGACTCTGGATACTGAGTGGATGA
TGAAAGCTGCTGCATTGTTGTGTGTTCACATCAGTCAAGCTGGAAATTCG
AACATCTACCTCAAAGTGTCGCCATGCTTACAACCTATCAACAATGAATG
GGTTGCTATGCGACAGAAGATTTGGATGGAGATGATTCAAAAGAACACTT
GGGGTGATAAGAAGAACGACGACGACGATTAAAAATGaattctttgtttc
ttttacCGTTCgtcttttctgttttgtttcaTTATGTTCGTTCGTTGCAA
TGCCCTTTGgtaaaattgtattttctttcttttggtgttttggtgtttct
aCTTTAACGTGTTTCGAGTCTTTTTTTTATACAAGAACActaaatttgaa
ctttttacGACAACATGAAGTCTttattgaagcgtttgggtgagacaaat
ttaatttatcgTTCTTACTCAGAAAAATATGGATCAGTTGGTCGGTATTA
TAATAAATTGCTTAAAATGTAAAGTCGGAAGGTCAAGATCTAAACATCTG
TGACGTTTCGACTTTTCCTTTTTATCAATGAGCGGCGTTGTAGCTATTTC
CATTTTGATATTCTAAATTTATCTAAGTTCTGAGAtgaatacacattttt
tttcaacttgttcAATCAAAAATATCTGCAAAATTCCTTCCTTGGAAATT
CAATActattattttttcgaaaattggatcGGTCTAgcccgtagaacaat
aaatttggtctcgccttatttttgcttttgaatCTAGAGGTTCATCTGGG
TCTTTAGTGGTTTGGCTTGTCAAAACAcaacaattcaattttttaaatgt
tttgagtTACAGTagaatttattttaatttgaaatattgttaCAGCAATT
TGTATTTAgtcgattttgaaatttttatgtttatagtttggtattttaat
ttaaatttaagttttctttgTTCCTCTTCTTATCCTTTTGTCCTTTT Run BLAST on NCBI protein sequence of TCONS_00008390-protein >TCONS_00008390-protein ID=TCONS_00008390-protein|Name=TCONS_00008390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MTSSVTQLTRSIFRKSGKILSRHTTSKRLFHSTLPVLSDRIEKHTVQDAS
TFLNNMLLQCKGAAIFAGTGQYHEEKNQDRLVMLNFVDDFLQDSSINVFD
SQELLDCCLRDSDVDLLINSLKAHSKFPVYNGELDIVDTSSWQHGFTLKP
FSIFTPVERILLFNDGKLYVNTLGDVQTVPIEDIEYVGLWVSDEPYNERR
LLLGLKGLQTKMLLSLERDLVHCDMAKLTLDTEWMMKAAALLCVHISQAG
NSNIYLKVSPCLQPINNEWVAMRQKIWMEMIQKNTWGDKKNDDDD Run BLAST on NCBI transcript from alignment at sc0000085:149359..152425+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008390 ID=TCONS_00008390|Name=TCONS_00008390|organism=Clytia hemisphaerica|type=transcript|length=3067bp|location=Sequence derived from alignment at sc0000085:149359..152425+ (Clytia hemisphaerica)
AAAGAGAGTACAGAACCTAGACTGGTACAATCACCCCTTTCTTCTGCAAT
CTACAACAGTCTACTCAGAATTTCTAATGTTTTGACAATAGGATGCTAGC
ATTTGCAGCTCCTTTACATTGGTTGGAGTAGCATGttattgtaacttttt
ttttcagggtGTATTTTAGAACATATAGTAGACAGAACTTTTTACAAATC
TTAAAAATGTTTACTAGTTTTCAAGTTTAGAAGTATTTAAGAAaacaatt
atttatttttaatatacCAGTTTGGTCTCTCAATATTTATATAGCTGTTA
TCTCAACAAAATGGTGGCCAAAACCCAGCAAACAGTTTCCAGGAAGACTC
GAGGTAAACCAAAATCTGGACGGGTTTGGAAATCTCAAGGGCAAAAGAAA
TCCACTATGATCAACGTCAAATCTTTACATCCGTCATGGAGCAAAAGATC
TAAAGAGCGTGCAGAACGAGAATCTGTAAAGAAATATCAAAAGGAACTGA
AACTTTCTTGCCATTGCAGTggagaaagaagaaaaacggATAAGGATTGA
AGAGAATCGAAGACGTAGAGAAGAAAATGCTAAGAAAGctgaaattgttc
aaaaaattactgattcatcaaaaattaaacgaatgaaaaagaaacaattG
CGACTAATTGAAAAGCGCTAATGCTCATTCCCCTAGAAGATTATTTGACA
AAAAAGTGTACAAAGACATGGTTCACTAAATAGAAAGATGGAAGTGGAAA
CACAGAAGTTATAAAGATGCGTTTGTTGACGAAATGGAAAGGGTGTGGAA
CTAGGAACGAAAGAAACCTCAATTCACAAAACGGAACTAGTCTTTATTAT
TTACGAGAGTTGACCCAGGTCGCCTTTAATTATGAACTTTACCAACAAAT
CAGAGTGATGTTAATTTTCGAATATCATGTCACATTCCTTTGACCCGCAT
TCAGAAATACCATGACCATTTTTGTGCAACAGTGCAACAGTCTACTTCTG
TTtgcaaaagaaataattttttgaaaaatcttttaactAAACCATTAAGT
GATTTATTACTGGTAGTTTGGTACTGACTTCTTTTCatactttttgaatt
taaattgtCAAGGCAGGTTGCTACTTATTGTTCTAACCTATACCATTCTT
TTTCTGTctgttttataaaataaaataagatgCTTCAAACTTGAATCTAA
TACGATCTTTAATATTAGTTATTTTTGAATGGTTTTAGATTTTAAGGatt
catttttgtaaaatcagctTTATAAATTTGTTTCATATTATTGAAGTGAA
ATATCAGACATAAATGTTGAAGTAAAGAGTTTTTCTTCGTTTTGATTACA
TGATTGAGCAACATttaatttttgtccatttttcttctttctttcaatag
ataaataatataaaatgacATCCTCAGTGACGCAGCTTACAAGATCAATA
TTCAGAAAAAGTGGTAAAATTTTATCAAGGCACACAACTTCAAAACGCTT
GTTCCATTCCACTCTGCCAGTTCTCTCAGATCGCATCGAGAAACATACAG
TACAAGATGCATCTACCTTCTTGAATAACATGCTACTCCAATGTAAAGGA
GCTGCCATATTTGCCGGGACTGGTCAATATCACGAAGAGAAAAACCAAGA
TCGTTTAGTGATGTTGAATTTCGTGGATGATTTTCTTCAAGATTcatcaa
tcaatgtttttgacAGCCaagaacttttggattgttgtTTAAGAGATTCT
GATGTTGATTTATTGATCAATAGTTTGAAAGCTCACTCCAAATTTCCGGT
GTATAATGGTGAATTGGATATAGTGGATACTTCTTCCTGGCAGCATGGCT
TCACATTGAAACCGTTCAGTATATTTACACCAGTGGAACGCATTCTCTTA
TTCAACGATGGGAAACTGTATGTTAATACCTTAGGAGATGTGCAAACTGT
TCCCATTGAGGATATAGAGTATGTCGGGCTCTGGGTTTCAGACGAACCAT
ATAATGAACGTCGCTTACTTCTTGGCTTGAaaggacttcaaacaaaaatg
ttGTTGAGTTTGGAACGTGATTTAGTACACTGCGACATGGCCAAATTGAC
TCTGGATACTGAGTGGATGATGAAAGCTGCTGCATTGTTGTGTGTTCACA
TCAGTCAAGCTGGAAATTCGAACATCTACCTCAAAGTGTCGCCATGCTTA
CAACCTATCAACAATGAATGGGTTGCTATGCGACAGAAGATTTGGATGGA
GATGATTCAAAAGAACACTTGGGGTGATAAGAAGAACGACGACGACGATT
AAAAATGaattctttgtttcttttacCGTTCgtcttttctgttttgtttc
aTTATGTTCGTTCGTTGCAATGCCCTTTGgtaaaattgtattttctttct
tttggtgttttggtgtttctaCTTTAACGTGTTTCGAGTCTTTTTTTTAT
ACAAGAACActaaatttgaactttttacGACAACATGAAGTCTttattga
agcgtttgggtgagacaaatttaatttatcgTTCTTACTCAGAAAAATAT
GGATCAGTTGGTCGGTATTATAATAAATTGCTTAAAATGTAAAGTCGGAA
GGTCAAGATCTAAACATCTGTGACGTTTCGACTTTTCCTTTTTATCAATG
AGCGGCGTTGTAGCTATTTCCATTTTGATATTCTAAATTTATCTAAGTTC
TGAGAtgaatacacattttttttcaacttgttcAATCAAAAATATCTGCA
AAATTCCTTCCTTGGAAATTCAATActattattttttcgaaaattggatc
GGTCTAgcccgtagaacaataaatttggtctcgccttatttttgcttttg
aatCTAGAGGTTCATCTGGGTCTTTAGTGGTTTGGCTTGTCAAAACAcaa
caattcaattttttaaatgttttgagtTACAGTagaatttattttaattt
gaaatattgttaCAGCAATTTGTATTTAgtcgattttgaaatttttatgt
ttatagtttggtattttaatttaaatttaagttttctttgTTCCTCTTCT
TATCCTTTTGTCCTTTT Coding sequence (CDS) from alignment at sc0000085:149359..152425+ >TCONS_00008390 ID=TCONS_00008390|Name=TCONS_00008390|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0000085:149359..152425+ (Clytia hemisphaerica)
atgacATCCTCAGTGACGCAGCTTACAAGATCAATATTCAGAAAAAGTGG
TAAAATTTTATCAAGGCACACAACTTCAAAACGCTTGTTCCATTCCACTC
TGCCAGTTCTCTCAGATCGCATCGAGAAACATACAGTACAAGATGCATCT
ACCTTCTTGAATAACATGCTACTCCAATGTAAAGGAGCTGCCATATTTGC
CGGGACTGGTCAATATCACGAAGAGAAAAACCAAGATCGTTTAGTGATGT
TGAATTTCGTGGATGATTTTCTTCAAGATTcatcaatcaatgtttttgac
AGCCaagaacttttggattgttgtTTAAGAGATTCTGATGTTGATTTATT
GATCAATAGTTTGAAAGCTCACTCCAAATTTCCGGTGTATAATGGTGAAT
TGGATATAGTGGATACTTCTTCCTGGCAGCATGGCTTCACATTGAAACCG
TTCAGTATATTTACACCAGTGGAACGCATTCTCTTATTCAACGATGGGAA
ACTGTATGTTAATACCTTAGGAGATGTGCAAACTGTTCCCATTGAGGATA
TAGAGTATGTCGGGCTCTGGGTTTCAGACGAACCATATAATGAACGTCGC
TTACTTCTTGGCTTGAaaggacttcaaacaaaaatgttGTTGAGTTTGGA
ACGTGATTTAGTACACTGCGACATGGCCAAATTGACTCTGGATACTGAGT
GGATGATGAAAGCTGCTGCATTGTTGTGTGTTCACATCAGTCAAGCTGGA
AATTCGAACATCTACCTCAAAGTGTCGCCATGCTTACAACCTATCAACAA
TGAATGGGTTGCTATGCGACAGAAGATTTGGATGGAGATGATTCAAAAGA
ACACTTGGGGTGATAAGAAGAACGACGACGACGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008390-exon-sc0000085-1491911889:149359..149382 | TCONS_00008390-exon-sc0000085-1491911889:149359..149382 | Clytia hemisphaerica | exon |
| TCONS_00008390-exon-sc0000085-1510915933:149359..149382 | TCONS_00008390-exon-sc0000085-1510915933:149359..149382 | Clytia hemisphaerica | exon |
| TCONS_00008390-exon-sc0000085-1575043694:149359..149382 | TCONS_00008390-exon-sc0000085-1575043694:149359..149382 | Clytia hemisphaerica | exon |
| TCONS_00008390-exon-sc0000085-1491911889:149653..152425 | TCONS_00008390-exon-sc0000085-1491911889:149653..152425 | Clytia hemisphaerica | exon |
| TCONS_00008390-exon-sc0000085-1510915933:149653..152425 | TCONS_00008390-exon-sc0000085-1510915933:149653..152425 | Clytia hemisphaerica | exon |
| TCONS_00008390-exon-sc0000085-1575043694:149653..152425 | TCONS_00008390-exon-sc0000085-1575043694:149653..152425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:149359..152425 + |
Blast
The following BLAST results are available for this feature:
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