|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008364 ID=TCONS_00008364|Name=TCONS_00008364|organism=Clytia hemisphaerica|type=transcript|length=1981bp
CCTGAATGAATGGATTATGTTACGATTATTCTTACAAACAATAACTATTA
TTTAAAGACGATGAATTGATAAATATTTACATAAgtttgatatttcaaaa
attctatCTTTGAAATtgacatcaaaataaaaaatactgaAATTAATTAG
GTATAATTTTCTAACTAAAAAATGCCTCGGAGATTGAGATCGAGAGGTTT
ACAAGGCTTTAAAATGCTTGACATCCTAAGCAGAATTACAGGGCCAAgga
aaaaacaggaaaatacATTTACATGCTGTAggtaatgcttataaaaaaca
tgtaaatttAAAATTGGGGATGAGATGTgattgatataattttgaaaaaa
aaacgagtaCAGTAGCTTGTAAGTAAGTATCTGGAAGTTCTGGAAAGTTT
TTCATCAGACTGACTGTGATTTTCAATGTGCATTTTAACCATATAAATAC
TAAACTTGTAATAAATTACAAATAATAATCTTTGTTCATTTACTTAGTTC
CTGCTTTACACGTTCGCTTATACTAAGCGTTGACCTACTACGAGCTGCGG
CTAAAGCTGCTGCACTTGCTGAGCTACTGGATGTAGGTGGCGCAGCTCTG
GAAAGCAGTGGTGAAGCTGATGAGGTTGCCGGCAATGTTTTTCGTAATTT
CTTCCATTTCAAATCGTCATCTAATAAGCTCTTAGTAACATCCTCTTTAT
TGACTGCTAAAACAGTTGACCAATCCGGAATAAATGGATCGGCCTTATAG
CGATCACGTCCAATTGAAAGTTCTGGTAAAATCTCCAATGCACCAAGTAG
AGCACCGCCCTGCCATGAGCAGTAATTAGCAGGCACAGGTGGCTTTTTCA
tcgccaatttcttaagaaataatGACTGACTGTATTGGTCAGATTTCAAT
AAATACTTCAACTCGGCCATTAATCGTGATTCAAAGCCTGGCATCATAAC
ACTTCCTCCAACCAACACAATATTTTCTGCCAGCATTTTACGACAATCAA
TAGGACATTTGAGTATGGAGTCAAGAATGAGGGTAGCAATTGATTTTCCT
TCTTCGTCACCTTCAAATAAAGTATCAGCAGCATGAGCTCTGATCTTACC
ATCCACATTTAATGTGATTCCTCCCTCGAGGGGATACTTCACAGGAACAG
CTTCCAAGTTGCAATCTTTTCTTCCAACAAAACAACATCTAACTTTGATA
TCCTCTAAAATGCGTGATTTCAAACTCTTAATATGATCCTTAGCTGGCTT
TTCTTGGTTCTCGATAAATACAACACCAGATTCCATGATTTGATTATTAA
TATGCTCTTCTAAAGAAAGTGCAGCAAGATCAATGAATTCTATACCGGTA
AGAATAGTGCCTTGCTCAAAAACAGGTACAACAGCTGTTTCGGTATAACC
AACGTCAACCACAAGACCAGATTGCAGACCGCATGCAAACAAAGCTAACA
AGTGGCTTGGTATGAATGTAACGGATGGCACTTCAAAATGAGTGAACAAT
ATCTTAGCCATCAGATTACGAATTTCAATTGGTTTCAGCATGGAATCACA
AATGACTACTCTACGTTCTTTAGGATTTACAAGTAGCTGTTTGAAAtaaa
tttcatggaaaaaatcTTTCAGTAATGATGAGAGATTATCTTTATCAGCA
CCTTGTAAGCCAGTCTTTCCATTTAGAATGGGTACAGATTCTAATTTGTT
GTTGATAATCTTTTCCAGTTCGGTACGTATGATGTGTCTTGGCACTTGTT
CACCGGCAAGACCAATCTTTGTAAAGGCAGTACCAAAATCAATGATAACA
GCCTGCTTGTCAGTACCAAGGCCCATCAGATCCAACAgagccatttttta
tttattttaaatctgaaaagtagctgaaaaaatgaaaaattctatTCAAT
AACAATGAATTTGAGATAAAACATATGCATACTGTAAGAGACATTTAGGC
ATACAGTAGTAGAAATTCAGAAGCTCGAAAC Run BLAST on NCBI protein sequence of TCONS_00008364-protein >TCONS_00008364-protein ID=TCONS_00008364-protein|Name=TCONS_00008364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MALLDLMGLGTDKQAVIIDFGTAFTKIGLAGEQVPRHIIRTELEKIINNK
LESVPILNGKTGLQGADKDNLSSLLKDFFHEIYFKQLLVNPKERRVVICD
SMLKPIEIRNLMAKILFTHFEVPSVTFIPSHLLALFACGLQSGLVVDVGY
TETAVVPVFEQGTILTGIEFIDLAALSLEEHINNQIMESGVVFIENQEKP
AKDHIKSLKSRILEDIKVRCCFVGRKDCNLEAVPVKYPLEGGITLNVDGK
IRAHAADTLFEGDEEGKSIATLILDSILKCPIDCRKMLAENIVLVGGSVM
MPGFESRLMAELKYLLKSDQYSQSLFLKKLAMKKPPVPANYCSWQGGALL
GALEILPELSIGRDRYKADPFIPDWSTVLAVNKEDVTKSLLDDDLKWKKL
RKTLPATSSASPLLSRAAPPTSSSSASAAALAAARSRSTLSISERVKQEL
SK Run BLAST on NCBI transcript from alignment at sc0000084:373893..375873 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008364 ID=TCONS_00008364|Name=TCONS_00008364|organism=Clytia hemisphaerica|type=transcript|length=1981bp|location=Sequence derived from alignment at sc0000084:373893..375873 (Clytia hemisphaerica)
GTTTCGAGCTTCTGAATTTCTACTACTGTATGCCTAAATGTCTCTTACAG
TATGCATATGTTTTATCTCAAATTCATTGTTATTGAatagaatttttcat
tttttcagctacttttcagatttaaaataaataaaaaatggctcTGTTGG
ATCTGATGGGCCTTGGTACTGACAAGCAGGCTGTTATCATTGATTTTGGT
ACTGCCTTTACAAAGATTGGTCTTGCCGGTGAACAAGTGCCAAGACACAT
CATACGTACCGAACTGGAAAAGATTATCAACAACAAATTAGAATCTGTAC
CCATTCTAAATGGAAAGACTGGCTTACAAGGTGCTGATAAAGATAATCTC
TCATCATTACTGAAAgattttttccatgaaatttaTTTCAAACAGCTACT
TGTAAATCCTAAAGAACGTAGAGTAGTCATTTGTGATTCCATGCTGAAAC
CAATTGAAATTCGTAATCTGATGGCTAAGATATTGTTCACTCATTTTGAA
GTGCCATCCGTTACATTCATACCAAGCCACTTGTTAGCTTTGTTTGCATG
CGGTCTGCAATCTGGTCTTGTGGTTGACGTTGGTTATACCGAAACAGCTG
TTGTACCTGTTTTTGAGCAAGGCACTATTCTTACCGGTATAGAATTCATT
GATCTTGCTGCACTTTCTTTAGAAGAGCATATTAATAATCAAATCATGGA
ATCTGGTGTTGTATTTATCGAGAACCAAGAAAAGCCAGCTAAGGATCATA
TTAAGAGTTTGAAATCACGCATTTTAGAGGATATCAAAGTTAGATGTTGT
TTTGTTGGAAGAAAAGATTGCAACTTGGAAGCTGTTCCTGTGAAGTATCC
CCTCGAGGGAGGAATCACATTAAATGTGGATGGTAAGATCAGAGCTCATG
CTGCTGATACTTTATTTGAAGGTGACGAAGAAGGAAAATCAATTGCTACC
CTCATTCTTGACTCCATACTCAAATGTCCTATTGATTGTCGTAAAATGCT
GGCAGAAAATATTGTGTTGGTTGGAGGAAGTGTTATGATGCCAGGCTTTG
AATCACGATTAATGGCCGAGTTGAAGTATTTATTGAAATCTGACCAATAC
AGTCAGTCattatttcttaagaaattggcgaTGAAAAAGCCACCTGTGCC
TGCTAATTACTGCTCATGGCAGGGCGGTGCTCTACTTGGTGCATTGGAGA
TTTTACCAGAACTTTCAATTGGACGTGATCGCTATAAGGCCGATCCATTT
ATTCCGGATTGGTCAACTGTTTTAGCAGTCAATAAAGAGGATGTTACTAA
GAGCTTATTAGATGACGATTTGAAATGGAAGAAATTACGAAAAACATTGC
CGGCAACCTCATCAGCTTCACCACTGCTTTCCAGAGCTGCGCCACCTACA
TCCAGTAGCTCAGCAAGTGCAGCAGCTTTAGCCGCAGCTCGTAGTAGGTC
AACGCTTAGTATAAGCGAACGTGTAAAGCAGGAACTAAGTAAATGAACAA
AGATTATTATTTGTAATTTATTACAAGTTTAGTATTTATATGGTTAAAAT
GCACATTGAAAATCACAGTCAGTCTGATGAAAAACTTTCCAGAACTTCCA
GATACTTACTTACAAGCTACTGtactcgtttttttttcaaaattatatca
atcACATCTCATCCCCAATTTTaaatttacatgttttttataagcattac
cTACAGCATGTAAATgtattttcctgttttttccTTGGCCCTGTAATTCT
GCTTAGGATGTCAAGCATTTTAAAGCCTTGTAAACCTCTCGATCTCAATC
TCCGAGGCATTTTTTAGTTAGAAAATTATACCTAATTAATTtcagtattt
tttattttgatgtcaATTTCAAAGatagaatttttgaaatatcaaacTTA
TGTAAATATTTATCAATTCATCGTCTTTAAATAATAGTTATTGTTTGTAA
GAATAATCGTAACATAATCCATTCATTCAGG Coding sequence (CDS) from alignment at sc0000084:373893..375873 >TCONS_00008364 ID=TCONS_00008364|Name=TCONS_00008364|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at sc0000084:373893..375873 (Clytia hemisphaerica)
atggctcTGTTGGATCTGATGGGCCTTGGTACTGACAAGCAGGCTGTTAT
CATTGATTTTGGTACTGCCTTTACAAAGATTGGTCTTGCCGGTGAACAAG
TGCCAAGACACATCATACGTACCGAACTGGAAAAGATTATCAACAACAAA
TTAGAATCTGTACCCATTCTAAATGGAAAGACTGGCTTACAAGGTGCTGA
TAAAGATAATCTCTCATCATTACTGAAAgattttttccatgaaatttaTT
TCAAACAGCTACTTGTAAATCCTAAAGAACGTAGAGTAGTCATTTGTGAT
TCCATGCTGAAACCAATTGAAATTCGTAATCTGATGGCTAAGATATTGTT
CACTCATTTTGAAGTGCCATCCGTTACATTCATACCAAGCCACTTGTTAG
CTTTGTTTGCATGCGGTCTGCAATCTGGTCTTGTGGTTGACGTTGGTTAT
ACCGAAACAGCTGTTGTACCTGTTTTTGAGCAAGGCACTATTCTTACCGG
TATAGAATTCATTGATCTTGCTGCACTTTCTTTAGAAGAGCATATTAATA
ATCAAATCATGGAATCTGGTGTTGTATTTATCGAGAACCAAGAAAAGCCA
GCTAAGGATCATATTAAGAGTTTGAAATCACGCATTTTAGAGGATATCAA
AGTTAGATGTTGTTTTGTTGGAAGAAAAGATTGCAACTTGGAAGCTGTTC
CTGTGAAGTATCCCCTCGAGGGAGGAATCACATTAAATGTGGATGGTAAG
ATCAGAGCTCATGCTGCTGATACTTTATTTGAAGGTGACGAAGAAGGAAA
ATCAATTGCTACCCTCATTCTTGACTCCATACTCAAATGTCCTATTGATT
GTCGTAAAATGCTGGCAGAAAATATTGTGTTGGTTGGAGGAAGTGTTATG
ATGCCAGGCTTTGAATCACGATTAATGGCCGAGTTGAAGTATTTATTGAA
ATCTGACCAATACAGTCAGTCattatttcttaagaaattggcgaTGAAAA
AGCCACCTGTGCCTGCTAATTACTGCTCATGGCAGGGCGGTGCTCTACTT
GGTGCATTGGAGATTTTACCAGAACTTTCAATTGGACGTGATCGCTATAA
GGCCGATCCATTTATTCCGGATTGGTCAACTGTTTTAGCAGTCAATAAAG
AGGATGTTACTAAGAGCTTATTAGATGACGATTTGAAATGGAAGAAATTA
CGAAAAACATTGCCGGCAACCTCATCAGCTTCACCACTGCTTTCCAGAGC
TGCGCCACCTACATCCAGTAGCTCAGCAAGTGCAGCAGCTTTAGCCGCAG
CTCGTAGTAGGTCAACGCTTAGTATAAGCGAACGTGTAAAGCAGGAACTA
AGTAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008364-exon-sc0000084-1491911889:373893..375873 | TCONS_00008364-exon-sc0000084-1491911889:373893..375873 | Clytia hemisphaerica | exon |
| TCONS_00008364-exon-sc0000084-1510915933:373893..375873 | TCONS_00008364-exon-sc0000084-1510915933:373893..375873 | Clytia hemisphaerica | exon |
| TCONS_00008364-exon-sc0000084-1575043694:373893..375873 | TCONS_00008364-exon-sc0000084-1575043694:373893..375873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:373893..375873 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004000 | Actin |
Blast
BLAST of TCONS_00008364 vs. Swiss-Prot (Human)
Match: ARP10 (Actin-related protein 10 OS=Homo sapiens GN=ACTR10 PE=1 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 1.014e-86 Identity = 157/397 (39.55%), Postives = 232/397 (58.44%), Query Frame = -3
Query: 711 MALLDLMGLGTDKQAVIIDFGTAFTKIGLAGEQVPRHIIRTELEKIINNKLESVPILNGKTGLQGADKDNLSSLLKDFFHEIYFKQLLVNPKERRVVICDSMLKPIEIRNLMAKILFTHFEVPSVTFIPSHLLALFACGLQSGLVVDVGYTETAVVPVFEQGTILTGIEFIDLAALSLEEHINNQIMESGVVFIE-NQEKPAKDHIKSLKSRILEDIKVRCCFVG--RKDCNLEAVP---------------VKYPLEGGITLNVDGKIRAHAADTLFEGDEEGKSIATLILDSILKCPIDCRKMLAENIVLVGGSVMMPGFESRLMAELKYLLKSDQYSQSLFLKKLAMKKPPVPANYCSWQGGALLGALE-ILPELSIGRDRYKADPFIPDWSTV 1844
M L + +G G +K AV+ID G AFTK G AGE PR II + +++ K V N T + L S LK+F H +YF+ LLVNP++RRVVI +S+L P R + ++LF +FEVPSV PSHL+AL G+ S +V+D GY E+ V+P++E +L + L +L + + Q++E V +E+ + S+ +LEDIK R CFV ++ ++A V YPL+G L++ G IR + LFE D E +S+ATLILDS+++CPID RK LAEN+V++GG+ M+PGF RL+AE++YL++ +Y ++L K + PP AN +W GGA+ GAL+ IL S+ ++ Y IPDW ++
Sbjct: 1 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGMPKPVRVVQYNINT-------EELYSYLKEFIHILYFRHLLVNPRDRRVVIIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTSVAKEQSLPSVMGSVPEGVLEDIKARTCFVSDLKRGLKIQAAKFNIDGNNERPSPPPNVDYPLDGEKILHILGSIRDSVVEILFEQDNEEQSVATLILDSLIQCPIDTRKQLAENLVVIGGTSMLPGFLHRLLAEIRYLVEKPKYKKALGTKTFRIHTPPAKANCVAWLGGAIFGALQDILGSRSVSKEYYNQTGRIPDWCSL 390
The following BLAST results are available for this feature:
|
