|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008329 ID=TCONS_00008329|Name=TCONS_00008329|organism=Clytia hemisphaerica|type=transcript|length=1550bpRun BLAST on NCBI transcript from alignment at sc0000084:408841..449471- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008329 ID=TCONS_00008329|Name=TCONS_00008329|organism=Clytia hemisphaerica|type=transcript|length=40631bp|location=Sequence derived from alignment at sc0000084:408841..449471- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008329 vs. Swiss-Prot (Human)
Match: ATS17 (A disintegrin and metalloproteinase with thrombospondin motifs 17 OS=Homo sapiens GN=ADAMTS17 PE=2 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 8.881e-21 Identity = 76/247 (30.77%), Postives = 109/247 (44.13%), Query Frame = 2
Query: 842 TLYIGIKISGQTLLIQLDRKNDLLTDDFSSEDVIDIQAKEGNGLERRLVDSFHLHCYYAGFVFGISDSKVTISTCD---GLRGYINLDNEAYQIQPMRAQDGGFA---HLVYR----SDAKKAEHGRSME-CVTGRFERKFEDGQPDTTFDENMNIRHFTKESNHHXXXXXXXXXXXXXXXXXXXXXXXVIATVEVFVVADKDMIQFHGNDTIEDYVLTMMNMVSDMYKEPSLGAIVNIVVTKLLVL 1549
L + + G+ L +QL R L+ F E+ G RR L C+Y+G V G S V++S C GL G I L E IQP+ G F+ HL+ R + + AE R + C ++K G+P + E N T E TVE VVAD DM+Q+HG + + ++LT+MNMV +M++ SLG +NI VTKL++L
Sbjct: 80 ALLLHLPAFGRDLYLQLRRDLRFLSRGFEVEEA---------GAARRRGRPAEL-CFYSGRVLGHPGSLVSLSACGAAGGLVGLIQLGQEQVLIQPLNNSQGPFSGREHLIRRKWSLTPSPSAEAQRPEQLCKVLTEKKKPTWGRPSRDWRERRNAIRLTSEH-----------------------------TVETLVVADADMVQYHGAEAAQRFILTVMNMVYNMFQHQSLGIKINIQVTKLVLL 287 The following BLAST results are available for this feature:
BLAST of TCONS_00008329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.