TCONS_00008316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008316
Unique NameTCONS_00008316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008316 ID=TCONS_00008316|Name=TCONS_00008316|organism=Clytia hemisphaerica|type=transcript|length=1853bp
AAAGAACTCGTGTTAGAAAGAGCTCAGCTCCAGATGATGTACGTATCCGA
AGGATTTCTGCACCGGTACAACAAGCGGGTGCTATGGATAACGGAAAGGC
CCGTAGTTCACGCCGCGTAAGAAGTAAAACATACGATGGTAATCAGGAGG
AGACGCAATCACCTGGTAGTCATCGCTCGTCATCAAGCTCAAGCGAAAGT
CAAATCAAATACGAAAATGATCGATTGAAAAAAGCGCTTGCTCAAAGCTC
ATCGAATGCAAAGAAGTGGGAAACTGAATTTCAAACATTGAAAAACAATA
ACGCCCGCTTGACGGCCGCCCTACAAGAGAGCGCGGTCAACGTGGAGAAA
TGGAAAGAACAACTGAATAATTATAAAGAAGACAACCAAAGACTCAGAAA
AAAGCTGGCGGCCAGTGCTGGTTCTGGCGGTGCTAAATCAAATTCGACGG
AAGTATCCGATTTAGAAAAACGGGTTTCGGAATtagaaaataaactaaaa
cggAAAGAAGAGGAGTTATCTCGCATAACGCAGCACAGTACGGATGAATT
ACATGTGTTACGGGAAAAGAATGCGCAGTTATCTAAAAAACTTAAAACAC
ACGAAGATAAATTATCAGATGACGTAAACAACAATCGCAAACAAAACGAA
GAAATACGAAACTACGAAGGCAAATTGAAACAATTCAGCGAAACAAGTCA
TGAAATGGAGTCGAAGTTACGAGAACTTTTTACGCTACAACAAAAAATGA
ATGGTTTGATGAAAAGTTGAAATTCTTTaacgatGTTAAATATCCCGATA
AACCGACATTGGATCCCGGCGGTCTGGCTCGACGCTTCGATCCGACTGTT
cgatattacgacccgacctTTTGACATCACGACCtgaccctttgatatta
cgacccgaccctttgatattacgacccgaccctttgatattacgacctga
ccttttgacattacgacccgaccctttgatattacgacccggCGGTTTGA
CCCGACGACCTGaccttttgacattacgacccgacggtttgacccgacga
tctgacagtttgacattacggcccgacgttttgattttgacaccgATCTG
ACTTTAtagttgaaacaacgttgtgtgccagctgggataagAATTTGAAA
CTTCTACTTTTCATATTGGATTTGACTCTCCAGTGCTCTAGTATTTCTTT
ctgttaggcgagaccaatttgatttgttgttttacgggcgcGACCGATCC
AGCTTTAGCTGCAAACGAAaacataataatattgaattttctGTACCACA
AATAATGGTCATTAAAAGAATCTAGAATCATGAATTTCTATGTacgaaag
attttattacaaactccatcaaagatgaatgatgaattttcgatcaatat
tatttgaaaatattacttaaagCCTGGTTACCttccttgattaatgaaaa
tcttatttttattttaccgaccgaccgactcatattttgctaacgatctg
cccgtagaacaacaaattaaattagtCTCGCCTTATATGTAAAATATGAT
TCTcgatattttctcaaattttatttttaatactTTTATCATAAAATTAT
GACAACAATAATAtaaaactttatttattttatgCTCACAGAGGaaaggt
ttttagaattttttattttttagattttaacgTGTGTAAGTATATGTGAA
AACTTTGTTCTTTGTTTACAAAGAGATAACCATTGACGGATTTTATTTAG
GCAAAAATTAGCTGCACgccaatacactcttctcgagatgcataaattta
ttgttgtcctcgttttcaaacagatttcattgctatgaaattatacattt
aaa
Run BLAST on NCBI

transcript from alignment at sc0000084:335433..347230-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008316 ID=TCONS_00008316|Name=TCONS_00008316|organism=Clytia hemisphaerica|type=transcript|length=11798bp|location=Sequence derived from alignment at sc0000084:335433..347230- (Clytia hemisphaerica)
AAAGAACTCGTGTTAGAAAGAGCTCAGCTCCAGATGATGTACGTATCCGA
AGGATTTCTGCACCGGTACAACAAGCGGGTGCTATGGATAACGGAAAGGC
CCGTAGTTCACGCCGCGTAAGAAGTAAAACATACGATGGTAATCAGGTAA
TGTTATCCTCATTTATCGATGTAACAATCAAAAGTTTGGCTCCCTTTGCC
TTACAATGTTTTATAAAGTTCTCGAGTCGCAGCCAAATTCGAAACTCGAA
ACCCGAAAAAAAATCTCAAACTCGTGAAAAATTAGACGCTATTTCGTTGC
AGAAAATTATTTTTATGTTTAGATTGAGAATTTTACTATTTGGCCAGTGG
AGTAAGGGGTATTTCATCCTTTTTTTCGAAAGTTCAACTTATTTCATCTC
GATCGCATTTTGTTTAAGATTTGCTACCCCACACCAAACCCCTTTGGGAA
TAAATGTCATAATTGCAACAATTACCAATTACTAAATTAATCTTTATTCT
GCCTACTGAATGACGTCATTGTACTTGAGGCTTGGGAGCCCTTCATTGTT
TTCCTTTCCGTCAAGCGTGTAGGAGTTTGAGAGAAGATAACCATCAAAAC
AATGTCATGATACAGGTGCAATTAAAGATTCCCTAGTGGCTTTTGCGTGC
TTTTATAAGAATAATTATGAGGAGATTATACAAAAGTATACTTTGTATTT
TGCCCAGTAAATCTGACATTGTGTTGCTTTCAAAAGCTACACGCTTTTTC
TTGAAAGAACAATTAAGTTTTAGCTAAGCCCTGGCTGTTCTTGGTGTTCC
ATGATTTTCAAACTTGAATGTTAAATGTCAAATGTTCTTATAGTGTTCTT
ACTATATATATGTACTTTGTTAATAATTTAGGACTTAGCTTTTTCAGAGT
TGTTTCTTCGGGAGTCCTTGCCAGTGTCTATTGCATGCACAGTTTCGTTT
TTTATTCGAACACTATTTCCTGATGTCAGCTTTTAAAGATTTTTCTTAAA
AAAAGTGAACTTTATGAAAATTATTGTGTGTGTGGGTAGAAAGAAAAATA
TGACGATTACCGTGTAACGTATTTGATTACTTTTGAGAATACTGTCCAAT
TTGGATGCGATTTGGTTTCTTATTATAAGAAACTCTATGTTATACTTCTG
TTTTTTTTTGTTTTTGTTTTTTGACTGTGAATTATGCACAAAATTTTGAG
GTCAAGTCAATGTATTTGAGTTCAGATCAGTTCAGATTCAAGATTGTGAG
TTATTTGAGTGTTTGGTCCAATCCTCCCAATGTTGAATGGCGTACATGTT
TAACTGATTCTTTTTAAAGGTTTTTTTCTTACATATAGGTGTTTCCGTTT
CATATCAGACACGTATTTCATATCAGGACAGTGTCTTGCTATTGTTATAT
TATGCTGATGTAAGCAAACTTTCTGGCCAATCTTGCTCCACATCCGTGTC
AATCCAATGTGAAAAAGCTTGTGAATTAAAATTTTTCTCTTTTCTAAAAG
CAAAACCTTTAACCGTTAATGTACCAGTTATTTTGCACTACTTAAACCTC
CAAATGATTAGTTCATGCGAATCCCTGTTATAAAAAAGCAGCTGAGATAA
TACAGTCTAGGAGTCTCTATTGCTTGAAAAGACAAGGGGGACTGAAATTT
CTTTGAATCATGGAAATTTCGATTTATTGTGATTGTTTCATAAGGAATTG
AGGGACTGTAGTAGCCTAGTTAACTAAGCCCGTATTCACAAGGCTAGGAC
ACACGGCTTATGGCAATATAGCGTTTTCGGCGCTTTAAAGATTTTATATA
TTTACAGATTTTAAGTTTGCCTTGGAATACTGCGTTATTCAGTCACAACT
TAACCATCAGATTTATCCAAGTGACTGAATCAAACTAGCTTAGATTTCTA
GGCTAGGACTGTAGGGACGAGAAAGCTTGTTCAAATTTGAAGATTCTACT
GTAATAAAAATTAATAGTAAGCATTTAATAAACCAAAAAATGTTCTTATA
TGGAAAGTGAAATACCTCTGCTAATACGACATCAATTAAAAAAAAATAAA
CTGTTTGAAAAATATATATATAATATGTAAGAGAATAGTATCTATCAATG
AAAAGGGATATAGAACACAAATCACATTTCTATCATCAAATAGACATAGC
TGTGTCGTTTAGCAAGACTGTCTCTAATACAGTTAGTTGAAAAAAAGATC
TTTGATCTTAGTGGAAATTTTTGAATTTGTTTTTTGTGGTTTTATTTGAG
TATTTTTGTTGGTAAGATGAAAGATAAAAGCTTTCTTGCACTTCCACGGG
TAAGGTTCTTGAATTTCTCTCCATGCGTTTCATTTAGGGTTCTCTGTCAT
TCTAAGTTTAGCTCTTTCCATTGCCAAGATTCGTAGAAGGCGATTAGTGG
AGAGAGAGTTGACCTCGCTACGTGTTCAATTTTCATTGGATTCTTACCCA
AAACCTTCCGGTCAGTAGACAATCACAATAATCATTTGATCACGTTCTTA
ATGTCGGATTTGTATACATTGCTGGGGACAATTTCAATCAATGTAGTTTT
TTGGACCCAGTATAATTTTCCCGAAAACTTGTTCACTAAACTAAACTAAG
CTTGGGAAAGGTTGAAGATGCAACTCTAGCCGTTTCGGGCTTCAAACTCA
ATGTTTGTAATCGGTAACAAATAAAACAAAATTTCGACCCTATGCAACCA
CTTTCCCAATTTCTACAGACTTTTGTTTGCATTCTGATTGGATCTTTTCG
AAGATGCTGTGTTGGTTGAAAAAACTGTGTAAAGAAGATCTCGGGTTGGT
TTTGTATGTGTATTGAAGTGAAGGGTTGAAAGCGAATCTAGATTTTCTAC
AAAACGGTCAACATTTTACCATCACCCGGCAACGTATTAGCCAAATATTT
GAATGTTGAGAGGTTAAAAAAACTTATGTTATTTGAGAGTGTGTTTGTGA
TATCACCTCACCTAAGAAATGATCGCAATTTTGGTTATAATAAAGCACTG
TTGTTTGCTTTCAAGATCTGAGGACAACATTTGTAGGGAAAATGGTATAT
TTGTTAAACATTTTTCATGTCCTTTTTCTATGTTTGTTTCAATTTCGTTT
GAAGACACTGTAAGTTGCATAGCTAGAAGTGCAATGGAATGAAGGGAAGC
GCAAACGATGTAGTATATATCCTGCACTGACACAGCTCCATTATTACCTT
CTCTCTATGTACAGGTCGATTTGNGTAATTTCTCCTTTGCATAGTTCGAT
CATTACTTTGGCTCTACGTACAGGTCGATTTCTAACCATTTTTTCGCTTT
CATTATGTACAGGAGGAGACGCAATCACCTGGTAGTCATCGCTCGTCATC
AAGCTCAAGCGAAAGTCAAATCAAATACGAAAATGATCGATTGAAAAAAG
CGCTTGCTCAAAGGTAACATCTCTTCCCCTTCTTCATAATCGCCGAGCAG
AATCTAATACTCTGCGCATGATACGCATTCACTCTAAAGGCCATGGATCC
GTAAGAGAAACTGCCTAGGTTGGCGAACCGCTTGAATCCTTTTCATACAG
TGTTGGGATGAATTTTTGGATTCTAAAAAGTAGGTGGTGCTGAGCTGATG
AGAGATTTCAGGTGGGGTAATCCTATGCAGGCGAGGATGACCTTTTTCAG
GTGTGGGTTTAGAGGTCTTGTCTACTAATAATAGCTCTGATTTTCTGATT
TCATAAGACTTCAGCCTGAAATTCAAGGGACCAGTAATCAAAATCTTTGA
ATATAAATAAAGTAGTTAGTATACCTTAATGTGGAAAATTTGTGAGCCAA
GAAGCGATTGAAAATATGCGGTGAAATAGAAGAATATCTTTTGTTTTACA
GCTCATCGAATGCAAAGAAGTGGGAAACTGAATTTCAAACATTGAAAAAC
AATAACGCCCGCTTGACGGCCGCCCTACAAGAGAGCGCGGTCAACGTGGA
GAAATGGAAAGAACAACTGAATAATTATAAAGAAGACAACCAAAGACTCA
GAAAAAAGGTAAAGGACGATTGACTTGCCAATCGGTTGGAGGATATTGTA
CTCAGCTTGGTCATTTCTATTTTATGTTAAGAAGTTTAGATAACAGTTTT
AACTCAAAAGACACATCATTACATACTGTGTGCCCCTTGTTTTGATGAGA
GCCCCATCGCAAAGGAGGACTGAAGCAAAAATTTTACCTGCTTTTATCTG
TGGACTGAGAGATTTTGGACATGATGAATGGGAGAGCTCGTAGTTTTAAT
ATTTCGGGAGTTTTTAAGATACAAACTAAACCGAAAATGAAGTTCTTTAT
GAATCTTGCTCTCCAATCCTCAAAAGCCAAGTCTTTTCTATTCAGTGTTA
AATTTGACTTGATTTTTTGGACCTACCTCCGGGTACCCCGGTGGAGGTTC
TATAAATTAACCCATGTCCGTTCGTTCGTCTGTTCGTTCGTCCGTCCGTC
CGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTCTGATTT
TTTGCACAATGATGCAAAACGGCAATGCCCAGAACGTGACGGAGCCCGAT
TTTTGAGAAAAAATTTATTTGGGCGAATTTGAGCCAAAAACTACCTAAAA
TTAGGGTTTTTTAGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGAT
TTTTTGTACAAAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGATTTTCGTATTTTTGGG
GAAATTCCCTTTAACCAAATAAGAAAATATAGCTTTTCTCAATGTTGACT
CGTTATTTTTTTCTGATTTTTTGCACAACGACGCAAAATGGCAATGCCTA
AAATGTGTCGGAGCCTGATTTTCGAAAAAAAATATATTTGGGCAAATTTG
GGCAAAAAACTGCCTAAAAATAAGGTTTTTTGGACTTTGGTCAAAATCCT
GTCATTACTTTTTTCTGATTTTTTGTACAAAGATGGAGGGCAAGATTCTC
TAAAGAATGGCTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCTTTAACCAAATATG
AAAATATAGCTTTTCTCAATGTTGACTCATAATTTTTTTCTGATTTTTTG
CACAATGATGCAAAATGGCAATTCCCAAAATGTGAAGGAGGCAGATTTTT
AAGGAAATTTTTTTTGGGCAAATTTGGGCCAAAAACAGCTTAAAAGGTTT
AAGTGATTTTCGTATTTGGGGAAATTCCTTTATACCATTTTACATTATTC
AACACACAAGCTTTATTTTTCTATTCTGAATTTTTGTACATATATTGTCA
CTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGC
ATGTTGCTTGTTTTCATTTCAGCTGGCGGCCAGTGCTGGTTCTGGCGGTG
CTAAATCAAATTCGACGGAAGTATCCGATTTAGAAAAACGGGTTTCGGAA
TTAGAAAATAAACTAAAACGGAAAGAAGAGGTTTGTCTCTTTTCCCTTTG
ATATTCCAGCAAGTTATTTGATTTTAGTTGTAAAGAGTTCAACGATTTGC
ATTCGCATTGTACTTGTTTTTCCCCATAAGTATAACGTTAAGCATATACA
GGCTCAGTTTTTGGTACCTAAACAATGGCTGACCCTGACTCAAATAAAGA
TTTTTACCTCAAATTTAATTTCCCCTAAGCATTAACGTGTATTTGCCACG
CCTGAGTTTCGTAATTAATTCGTTTGTACTTTTTCACGCGTAGCGTCAAA
AATATTTATTTATTGCCATGCGTAGACACTTGCTTATTTAAAAAAAACAT
GCTCTCTCAAGTTCTTTAACGGTTTAAAATCATTTTCATCTCAACCGGTG
TGACCGAACTGACTGAGTGGCGTTGTGCCGAAATACTTGACAAAACGCCG
TGACAAAAGCGGAAACCATCGTGGAGACAGTTTAGTGAGTGTTTGCTCGT
TGGAGGTGTCCGCCTTTCGGATGTTTTACTGTATTTATTTTCTTCCAATT
TTAGGAGTTATCTCGCATAACGCAGCACAGTACGGATGAATTACATGTGT
TACGGGAAAAGAATGCGCAGTTATCTAAAAAACTTAAAGTAAGTGTTTTT
TTCTTACATGCTATCTGCGTTATATATCTGGGAATGAAAACGGTCAGTGG
AAATCCGTAACATGATTGGTAGATTAAGTTAATTGGATTTTTTTGGCGTG
GGTTTAATTTGGCGATTGAACAAAATGAGATTTTAGGTGGGAATCCAATT
TGGCGAATGATCAATTTTCTAGAATTTGGTTGGTATTTCACTACTACCAA
AATTAATCCAGGGTATATACCAATATGGTATATATAATATATAATTTCGA
ACACACTTATCAATAAAACCAAAGCAATTAAAAGTTAAGAAGTTTGCAGA
AGAAGATACATACGTTAGTCAAGATAACCTCATTTTTCAATGAGGCCATT
ATGGAAGCAAACATTCGATTCTGTAAAGACGATCGCTTACGCAAATCGAA
CGTTTACTTCCATAATGGTGGAAGTTATGAGTGATAGTTAAATAATCTAT
AAGGCCTGGCCGTTTGACTGAAGTCCCAAGAAGATGATTGAAAACAGTCT
GAAAATCCTGGATTACTAGGCTCTCCATGTAAAATATCGAATCTATCTGA
ATTTCAAGGAGATTTGTTTTCACCTTTCAGACACACGAAGATAAATTATC
AGATGACGTAAACAACAATCGCAAACAAAACGAAGAAATACGAAACTACG
AAGGCAAATTGAAACAATTCAGCGAAACAAGTCATGAAATGGAGTCGAAG
TTACGAGAACTTTTTACGCTACAACAAAAAATGAATGGTTTGATGAAAAG
TTGAAATTCTTTGTGAGTTTCTCATTCACTCTCTTCTCTGTTTATGTTTC
ACTTCATGTTTCAGATGTGTTCAGCTAGATAATTCATGATAAACATGACG
TAATGTTTTCTATTATTTTGGTAGTAGTGGCATTTCCGCTACTTGCCAAA
ACCGGGGTGGTTCCGTAGAAAGGATTACGTAATGAATATCATTCCATGAA
TAAGAGAGGACCTGTTTAGCCCCAGTTTTTCTGTTCAATTTTAATATTTT
CTCAAATTTGTCGATTTCAGGCAAATCTTTAGATTATAAAACTATGAGGG
GACTAGAAACGAAGGACAGACAATCTTTCCAACACATAACAGTGTATAAA
TGATTCTTCTTTTTAAAGAAAGTTCAATTTATCCACTTTTTAAGTATGTA
ATGAAAATATATTATATAGTATTTTACCATAGTAGAGTTAGACCAAAAAA
ATAGTGTACCATAGTCTCAAAAGAAATTGTATATAATTAAAATATGTTAT
ATCATAAACTCAAAGTGTGTATTATTGTTTTAGTGTTCTAGCTTTGCCGA
GATCAGATAATTTTTGTTTTACATTTAAACTTAGCAAATTTTAACTTTGT
CTGCTAATATCTACGTCATTTTACTTGAACAAGTTTGCCCTACAATTTTC
AAAGCTGTATGAAAACGAATGTAATTTTTCTTTAATGCACTCTTTGTTGT
TTTGTCTTCCGCTGAGATGAAATTTGAAATTTCTCTAAAATCTCAGCTGG
CACACAACGTTGTTTCAACGTTCATCTAATATTCATAACGTCCATATAAC
GTTGAATGAACGTTGAAAAGATCGGAAGAGCGGTTCAGCAGGAATGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTA
ATGTCAAACTGCCAGATCGTCGGGGCGAACCGTCGGGTCGTAATGTCAAA
CTGCCAGATCGTCGGGTCGAACCGCCGGGTCGTAATCTCAAAAGGTCAGG
TCGTCGGGTCGAACCGTCGGGTCGTAATGTCAAAGGGTCAGGTCGTAATA
TCAAAGGGTCAGGTCGTAATATCAAAAGGTCGGGTCGTGATGTCGAACGG
TCGGGTCGTAGCGTCGAACCAGACTGCCGGGTTAAACTGCCGGGATACAA
TGCCGGATTATCGGGTTTATCGGGCTTATCAGATTAGTTAAAATCTCGTT
CCGCAGAATACTATAAACTAAATACTATAATACTAAGAACAAAAGTGGAA
GCAAAATGGAGGCGAAATAATTTGAGCAGTGAAATGTTTATATTTTTACC
ACTGATTAAATATACTTTCAGGTGTCTATAACATGTTTATATTATCAAAA
TCATGAAGTGTTCTTATTCAACTATCTTTGTGCANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATTTTGAACAC
TCAAGAGGAGAAAGAGATTTCTATTTTCTCTCGAAAGTGTGCATATGGAT
CTGAGAAGTGAAATGAAACTCATCAACAAGAGACAAGAAGGACTTCATCT
CTCGAAAGTGTGCATATATGGATCTGAGAAGTGAATGAAACTCATCAAGA
CAAGAAAGCCTTAATTTCAAAGAAGATTTTCATGGTTCTTACTTCAAAAT
ATGGGACATTTTTGTTCATCCAACGACTTGAAAAATGAACTCTGGAGACT
GTAGTCTACATAACTTCAGAATACTTCGATAGAATCATGGAACGCGGATA
TTATTTTCTCGATAAAAGCACTGTATCATGAGATTTTGCACGAACCAAAT
AAAATGAAGTGAAAAGTAACTCTACGATCAACGATGAACAAAAAACTCTG
GTTCTGAGCATCATATTGTACTGATTTGGAATTTTATGAAATAATAATGT
TGAGGAAGTAGCAGTAGGACACATNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCGCAAAGTATTTTTC
GGTTTGTTTAGATTACGAAAACGAAAGTGAAAATCCCGTTCGACCAATCA
AATTGTAAACTTTTATCGCGCTCGACCAATCAAGTTCCAGACACGTGACC
ATAATATTTTGATTTGCGTAGTATTGGATTATCCCACTGACCTTTATATA
ACCCTGGACCAAACAATATCTGCCATCTTTGATTGGAGTTTTTTAGAATT
GGTACCCAAGGAGAAGCCATTGCAATGCTAAAAATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCG
ACATTAGGGTACCAATTTTCAAAAAACTCCGATCAAAGATTTTGCTTGGC
TGGGATTGAGAAGCTTTGTCCAGGGTTATATAAAGGTCAGTGGATTATCC
CTTTAAAAAATGATATTTTACAGAACGATGTTAAATATCCCGATAAACCG
ACATTGGATCCCGGCGGTCTGGCTCGACGCTTCGATCCGACTGTTCGATA
TTACGACCCGACCTTTTGACATCACGACCTGACCCTTTGATATTACGACC
CGACCCTTTGATATTACGACCCGACCCTTTGATATTACGACCTGACCTTT
TGACATTACGACCCGACCCTTTGATATTACGACCCGGCGGTTTGACCCGA
CGACCTGACCTTTTGACATTACGACCCGACGGTTTGACCCGACGATCTGA
CAGTTTGACATTACGGCCCGACGTTTTGATTTTGACACCGATCTGACTTT
ATAGTTGAAACAACGTTGTGTGCCAGCTGGGATAAGAATTTGAAACTTCT
ACTTTTCATATTGGATTTGACTCTCCAGTGCTCTAGTATTTCTTTCTGTT
AGGCGAGACCAATTTGATTTGTTGTTTTACGGGCGCGACCGATCCAGCTT
TAGCTGCAAACGAAAACATAATAATATTGAATTTTCTGTACCACAAATAA
TGGTCATTAAAAGAATCTAGAATCATGAATTTCTATGTACGAAAGATTTT
ATTACAAACTCCATCAAAGATGAATGATGAATTTTCGATCAATATTATTT
GAAAATATTACTTAAAGCCTGGTTACCTTCCTTGATTAATGAAAATCTTA
TTTTTATTTTACCGACCGACCGACTCATATTTTGCTAACGATCTGCCCGT
AGAACAACAAATTAAATTAGTCTCGCCTTATATGTAAAATATGATTCTCG
ATATTTTCTCAAATTTTATTTTTAATACTTTTATCATAAAATTATGACAA
CAATAATATAAAACTTTATTTATTTTATGCTCACAGAGGAAAGGTTTTTA
GAATTTTTTATTTTTTAGATTTTAACGTGTGTAAGTATATGTGAAAACTT
TGTTCTTTGTTTACAAAGAGATAACCATTGACGGATTTTATTTAGGCAAA
AATTAGCTGCACGCCAATACACTCTTCTCGAGATGCATAAATTTATTGTT
GTCCTCGTTTTCAAACAGATTTCATTGCTATGAAATTATACATTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004671XLOC_004671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008316-exon-sc0000084-1575043694:347085..347230TCONS_00008316-exon-sc0000084-1575043694:347085..347230Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1575043694:343818..343918TCONS_00008316-exon-sc0000084-1575043694:343818..343918Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1575043694:343223..343379TCONS_00008316-exon-sc0000084-1575043694:343223..343379Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1575043694:341351..341458TCONS_00008316-exon-sc0000084-1575043694:341351..341458Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1575043694:340743..340826TCONS_00008316-exon-sc0000084-1575043694:340743..340826Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1575043694:339969..340150TCONS_00008316-exon-sc0000084-1575043694:339969..340150Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1575043694:335433..336507TCONS_00008316-exon-sc0000084-1575043694:335433..336507Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1510915933:347085..347230TCONS_00008316-exon-sc0000084-1510915933:347085..347230Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1510915933:343818..343918TCONS_00008316-exon-sc0000084-1510915933:343818..343918Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1510915933:343223..343379TCONS_00008316-exon-sc0000084-1510915933:343223..343379Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1510915933:341351..341458TCONS_00008316-exon-sc0000084-1510915933:341351..341458Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1510915933:340743..340826TCONS_00008316-exon-sc0000084-1510915933:340743..340826Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1510915933:339969..340150TCONS_00008316-exon-sc0000084-1510915933:339969..340150Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1510915933:335433..336507TCONS_00008316-exon-sc0000084-1510915933:335433..336507Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1491911889:347085..347230TCONS_00008316-exon-sc0000084-1491911889:347085..347230Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1491911889:343818..343918TCONS_00008316-exon-sc0000084-1491911889:343818..343918Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1491911889:343223..343379TCONS_00008316-exon-sc0000084-1491911889:343223..343379Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1491911889:341351..341458TCONS_00008316-exon-sc0000084-1491911889:341351..341458Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1491911889:340743..340826TCONS_00008316-exon-sc0000084-1491911889:340743..340826Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1491911889:339969..340150TCONS_00008316-exon-sc0000084-1491911889:339969..340150Clytia hemisphaericaexon
TCONS_00008316-exon-sc0000084-1491911889:335433..336507TCONS_00008316-exon-sc0000084-1491911889:335433..336507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:335433..347230 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0887055	0	0.000343204	1.92298e-09	4.41968e-06	0	1.41121	0	0	0	0	0	0	0	0	0	0.0035008	0.00175387	1.11164	0	0.674151	0	0	0	0	0	0	0.263209
Blast
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BLAST of TCONS_00008316 vs. Swiss-Prot (Human)
Match: HOME2 (Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.327e-17
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 3 
Query:  204 IKYENDRLKKALAQSSSNAKKWETEFQTLKNNNARLTAALQESAVNVEKWKEQLNNYKEDNQRLR 398
            +K END+LK AL QS++N KKWE E QTL+ +NARLT ALQESA +VE+WK Q +  +++N RLR
Sbjct:  162 LKSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSICRDENDRLR 226
The following BLAST results are available for this feature:
BLAST of TCONS_00008316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HOME26.327e-1760.00Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 ... [more]
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