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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008243 ID=TCONS_00008243|Name=TCONS_00008243|organism=Clytia hemisphaerica|type=transcript|length=2062bp
GAAAGATGCCATTGCAGTGTTATTTTAAAAGATgacattctattgcaaaa
tGGTTTCACTTACTAACGTTCAAGACAACCGGCATTTCTAACCATTACTG
AAGAAAAATTGCCACAAGACAGATTGAAGAATGGCACCTCTTTCTGACGA
AGACAAGGTGATCATCAGACATTATATTGAGAAAGAGTATACAGCTTATG
AGATATGGAAACAGAACCCAGAAAAGAACTGGCATTATTCAAAAGTTAAA
CGTGCCGTCAAGATATTTAAAGAGTATGGTACTATGGAGCAAAAGAAAGG
ATCTGGAAGACCAAGAAGTGTCAGAACTGCTGAAAATGAAGCTTTTGTTG
AAGAAATGATCTGCTTGCAGGAAGACGAACCTGGGACACACGCTTCACCA
AGAGAAATCGCTAGAGAGCTTGAAATCTCTCATTCCTCTGTACGCCGAAT
CAGTGAAGATAAAGGTTACAACCAATTCAAACGTCTAAAAACACCACAGA
TGAATGATGCAACACGCAATCGTACAGTCGATCCAGCTGTTAGTCTTCAT
gagaagtttgcaaaaaaccCAAGGATGATTGAACGCGCCATCTTTCAAGA
TGAAAGCGATTTTCCACTCCAGGTACCGTTAAAAGCCAAAACGATCGAGT
TTACCACAAAGGCACAAAGAAAGACGTTCCTGATGAAAACCTTTTCCATG
AAAGCAACCGCCAATCAGTAAAAGTTATGGTGTCATCTGCACTCACCTGG
CATGGTGTTACGAGGCCAATTTTGGTAAAACGAAAAGGATTGAAATTCAA
CGCCAAAAACTACAAGATTCATCTGAAACGTGAACTCTAACCAGAAATCG
AAAAAATCCCTCATTTTTTCGCATCTTTTACCCTCTTTCAGATGGGCCTA
TTTTCAAAGTGATTtgatgagtttgaaattttgacctggCCTCCCtatta
atgatgtcataatcaatgccgtgcattatttgtcagcgccgtgcatattt
tgtcaacatccttttcattgaataaataccactaaaatatacaagagaaG
TAAGCATAAATTTATCCCCCGcaagcacggcttagctaagcgcagctctc
ttattcattatctaagaattggaacgggcaaagattaccgcgcgggctga
tagcggacaaaggttatttgaagatattttcagttataatccaaggtaga
acaaactaaacatagaaagggggtattttttagtgctctatacgatgatc
ggtatctttttcaaattctatgtttagatttttctatcCAGCCCCATTGC
TCTGTATGCGCgcccctgttgctaagacctttgcttgaaattgaaagtga
aaccaaaataatttagcccACACTGCCGTtcgcgtaatatcgataaagtg
aaatgaggtcctgactggtAGTTGTTGATATTTGGcctctgtattttcac
tttacTGTTAAAAATCTCTTTGTAGAGCTGCcagtcgaaatttcaaactt
atttttcaaattcaaaacctATGCCATTCGAAGCCCTTAAGTCTTTTACA
TGGCAAAAAGTTTTCGTTCTTGAGATACATCAATTTGAAGTTTCAATTTT
ACAGCTCCTCCTTCGGTAACAAGACTCCGCCCAGCCAGAGCTAAATTCCA
CGATATTTTGGTAGGGAGGCCGAAAGGTCGCGCGCGGAGCGGTAACAATT
CccgattttcataaaaaagaagTTTGGAGATAAATATCTcacctttaaaa
aaagatattcagaaaccttttttttttaagtatagAGAATTTCTTAATct
gtcttttaaaaaaaaaccagCCGTTTTTGTCGCTTCCTTGAGTCACAATC
GTCCGATAATGGCAACCTGTCTACTATTTCTGACGGACACGGAAACCGGC
ACCGACGTTTCAAAACATAAGCCTTTTTCAAAAGGTTATAACAATTGAGC
GAAAATCATTAgccatttaatttttttactatTGTCTTCCCTCGTGATTC
AAGTTTCTTTTGAATCTACGCTGAAAAAAAGAAGGATCTCCAGGAgccaa
gaaattgaaaac Run BLAST on NCBI protein sequence of TCONS_00008243-protein >TCONS_00008243-protein ID=TCONS_00008243-protein|Name=TCONS_00008243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MAPLSDEDKVIIRHYIEKEYTAYEIWKQNPEKNWHYSKVKRAVKIFKEYG
TMEQKKGSGRPRSVRTAENEAFVEEMICLQEDEPGTHASPREIARELEIS
HSSVRRISEDKGYNQFKRLKTPQMNDATRNRTVDPAVSLHEKFAKNPRMI
ERAIFQDESDFPLQVPLKAKTIEFTTKAQRKTFLMKTFSMKATANQ Run BLAST on NCBI transcript from alignment at sc0000082:661259..663320 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008243 ID=TCONS_00008243|Name=TCONS_00008243|organism=Clytia hemisphaerica|type=transcript|length=2062bp|location=Sequence derived from alignment at sc0000082:661259..663320 (Clytia hemisphaerica)
gttttcaatttcttggcTCCTGGAGATCCTTCTTTTTTTCAGCGTAGATT
CAAAAGAAACTTGAATCACGAGGGAAGACAatagtaaaaaaattaaatgg
cTAATGATTTTCGCTCAATTGTTATAACCTTTTGAAAAAGGCTTATGTTT
TGAAACGTCGGTGCCGGTTTCCGTGTCCGTCAGAAATAGTAGACAGGTTG
CCATTATCGGACGATTGTGACTCAAGGAAGCGACAAAAACGGctggtttt
tttttaaaagacagATTAAGAAATTCTctatacttaaaaaaaaaaggttt
ctgaatatctttttttaaaggtgAGATATTTATCTCCAAActtctttttt
atgaaaatcggGAATTGTTACCGCTCCGCGCGCGACCTTTCGGCCTCCCT
ACCAAAATATCGTGGAATTTAGCTCTGGCTGGGCGGAGTCTTGTTACCGA
AGGAGGAGCTGTAAAATTGAAACTTCAAATTGATGTATCTCAAGAACGAA
AACTTTTTGCCATGTAAAAGACTTAAGGGCTTCGAATGGCATaggttttg
aatttgaaaaataagtttgaaatttcgactgGCAGCTCTACAAAGAGATT
TTTAACAgtaaagtgaaaatacagaggCCAAATATCAACAACTaccagtc
aggacctcatttcactttatcgatattacgcgaACGGCAGTGTgggctaa
attattttggtttcactttcaatttcaagcaaaggtcttagcaacagggg
cGCGCATACAGAGCAATGGGGCTGgatagaaaaatctaaacatagaattt
gaaaaagataccgatcatcgtatagagcactaaaaaataccccctttcta
tgtttagtttgttctaccttggattataactgaaaatatcttcaaataac
ctttgtccgctatcagcccgcgcggtaatctttgcccgttccaattctta
gataatgaataagagagctgcgcttagctaagccgtgcttgCGGGGGATA
AATTTATGCTTACttctcttgtatattttagtggtatttattcaatgaaa
aggatgttgacaaaatatgcacggcgctgacaaataatgcacggcattga
ttatgacatcattaataGGGAGGccaggtcaaaatttcaaactcatcaAA
TCACTTTGAAAATAGGCCCATCTGAAAGAGGGTAAAAGATGCGAAAAAAT
GAGGGATTTTTTCGATTTCTGGTTAGAGTTCACGTTTCAGATGAATCTTG
TAGTTTTTGGCGTTGAATTTCAATCCTTTTCGTTTTACCAAAATTGGCCT
CGTAACACCATGCCAGGTGAGTGCAGATGACACCATAACTTTTACTGATT
GGCGGTTGCTTTCATGGAAAAGGTTTTCATCAGGAACGTCTTTCTTTGTG
CCTTTGTGGTAAACTCGATCGTTTTGGCTTTTAACGGTACCTGGAGTGGA
AAATCGCTTTCATCTTGAAAGATGGCGCGTTCAATCATCCTTGggttttt
tgcaaacttctcATGAAGACTAACAGCTGGATCGACTGTACGATTGCGTG
TTGCATCATTCATCTGTGGTGTTTTTAGACGTTTGAATTGGTTGTAACCT
TTATCTTCACTGATTCGGCGTACAGAGGAATGAGAGATTTCAAGCTCTCT
AGCGATTTCTCTTGGTGAAGCGTGTGTCCCAGGTTCGTCTTCCTGCAAGC
AGATCATTTCTTCAACAAAAGCTTCATTTTCAGCAGTTCTGACACTTCTT
GGTCTTCCAGATCCTTTCTTTTGCTCCATAGTACCATACTCTTTAAATAT
CTTGACGGCACGTTTAACTTTTGAATAATGCCAGTTCTTTTCTGGGTTCT
GTTTCCATATCTCATAAGCTGTATACTCTTTCTCAATATAATGTCTGATG
ATCACCTTGTCTTCGTCAGAAAGAGGTGCCATTCTTCAATCTGTCTTGTG
GCAATTTTTCTTCAGTAATGGTTAGAAATGCCGGTTGTCTTGAACGTTAG
TAAGTGAAACCattttgcaatagaatgtcATCTTTTAAAATAACACTGCA
ATGGCATCTTTC Coding sequence (CDS) from alignment at sc0000082:661259..663320 >TCONS_00008243 ID=TCONS_00008243|Name=TCONS_00008243|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at sc0000082:661259..663320 (Clytia hemisphaerica)
TTACTGATTGGCGGTTGCTTTCATGGAAAAGGTTTTCATCAGGAACGTCT
TTCTTTGTGCCTTTGTGGTAAACTCGATCGTTTTGGCTTTTAACGGTACC
TGGAGTGGAAAATCGCTTTCATCTTGAAAGATGGCGCGTTCAATCATCCT
TGggttttttgcaaacttctcATGAAGACTAACAGCTGGATCGACTGTAC
GATTGCGTGTTGCATCATTCATCTGTGGTGTTTTTAGACGTTTGAATTGG
TTGTAACCTTTATCTTCACTGATTCGGCGTACAGAGGAATGAGAGATTTC
AAGCTCTCTAGCGATTTCTCTTGGTGAAGCGTGTGTCCCAGGTTCGTCTT
CCTGCAAGCAGATCATTTCTTCAACAAAAGCTTCATTTTCAGCAGTTCTG
ACACTTCTTGGTCTTCCAGATCCTTTCTTTTGCTCCATAGTACCATACTC
TTTAAATATCTTGACGGCACGTTTAACTTTTGAATAATGCCAGTTCTTTT
CTGGGTTCTGTTTCCATATCTCATAAGCTGTATACTCTTTCTCAATATAA
TGTCTGATGATCACCTTGTCTTCGTCAGAAAGAGGTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008243-exon-sc0000082-1491911889:661259..663320 | TCONS_00008243-exon-sc0000082-1491911889:661259..663320 | Clytia hemisphaerica | exon |
| TCONS_00008243-exon-sc0000082-1510915933:661259..663320 | TCONS_00008243-exon-sc0000082-1510915933:661259..663320 | Clytia hemisphaerica | exon |
| TCONS_00008243-exon-sc0000082-1575043694:661259..663320 | TCONS_00008243-exon-sc0000082-1575043694:661259..663320 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:661259..663320 . |
Blast
The following BLAST results are available for this feature:
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