TCONS_00008205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008205
Unique NameTCONS_00008205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008205 ID=TCONS_00008205|Name=TCONS_00008205|organism=Clytia hemisphaerica|type=transcript|length=2310bp
CAAACAAGCTGAAGATATTGCCATCAAATGAACACATATCTTTCTAAGGA
AACCCAACCACGGTTCGAAAGTGTGGCGTTCTTCTTTTTGCGGGAAAAGC
TGTAAAAGTGGCGGGAGAAAGACGAActgaaagtgaagaagaaaagaaaa
ggcaattatttataagaaaagatCAACAACAATCACAATCAAACCTCAAA
GtgATTCACTGATTGGTCATCAGAATGGCTGAAAATGAAGGGAAACGAAA
ACTGAGTGAAGATGAAGAAAGACCATCTGAAAATGGTGACATCAAACGCT
TGAAAGTCTGTGAGCCACAAGAGCTTGGTACTTTACTGTATTCAGGATTG
ACAGATTATACTGAGAGAAATGACAGTGCAATTTCCAAGAGTCCTGCACT
TCAATGGTCACCTTTTCAATATGAAAGCCTCAAGGGAATCAAAATACGTA
AGGTTTCAACAGGACCCGTTTCTTACCACACCCTTGCCATATCAGAGGAT
TACAAAGTTTATAGTTGGGGTTATAACAACAAAGGACAACTTGGACATGG
TGACTGTAGGAATCGGCGAAATCCTACTTTAGTGGAATCACTATCAGGAT
ATAAAGTTGTAGATGTGGCAACAGGCCGCATGCATTCCCTTGTGTTGACA
GATGAAGGTCAGGTCTTTGCTTTTGGTGACAATAGCAGTGGCCAATGTGG
AGTTGGTTCTAAGGATAGCCAAATGTCCAACCCTAAGCGTATCGATTATG
ATGGTGCATCAATCGTCAAATTTGCATGTGGTTCTGAATTCAGTTTGATT
CTTGATGACTTGGGAACTGTTTACTCCTTTGGCCATCCAGAGCATGGTCA
GCTTGGCCATGGAACTGATAGCAGAGAAATTGTTGCTGGAAAGGGAGAGG
TCTTTCACTTCGAGCACTCACCCATTCCAATCACAAGTTACCGAGAAATC
GATGATGGAGAGGTGATTTTTCACGGCCAGCCCAGAATTGTCGATATTCA
ATGTGGAAATAATCATTCTTGTGCGATTGACGAGAAACAGCGTATTTTTA
CATGGGGATTTGGTGGCTATGGTCGTCTTGGACACAACAGTACCCAAAAT
GAGATGGTTCCACGACTGATGAAATGCTGGTATCGAATCACTGGCCGAGC
AGATGGTGGTATTATTAGAGTTGCATGTGGCTCACAATTCAATATTGTTC
AAACTACTGTTGCAAAATGTTCATATTACTTTGGCCAAATCAATATGAAC
GGAGAGGCAGCAATGTATCCTAAATCCATCGATGATTTGCAAGGCTGGAA
TGTACGTCGCGTTGTATGCAGCATGCGTGGTTGGGCAGCTTTGGCTGATG
ATTCGGTTATTGCTGCTCAATGCAGTCCTGGTTTTGGTCAACTTGGAATG
GGTTTTAATAAGAAGTCATCAGCTCGACCACTTCTTGTGGAAccatttga
aaaaatgaaggttcATCATCTCGGTCTTGGTTACATGCATGGTGTTTTTC
TTGTTCGCAATGAAACAGAGAAAGATGAGAAAGAAATGGAAAAGTTCGAA
ATCCTCTCATTTGAAGACAATGacaaaaaagttgaagaggCTCCTCCAGC
CAAAGGAAAAGGGAGGGGTAAAGCAGCTTCTAAAGGAAAAGCAACTGCTA
GAAAAGCTGCACCTGGTCGCAAGAAAAAGTAACTCTGTTAAGAGGGCCTC
CTTCTCTGTATGAACtttattcatatttttttttcatttttcgtttttca
acaTAGGGATGTAACTAACTAGaaacttttaatttgtttttttgtcattg
cTGCACTTCAGCTTGAACTTTTGATGGATAATTATATCCGTTTTGGATTC
TTAccaccatcaatcccacctcCTACCCCACCCTACCCCACCCTAGTTCG
ACATTGAATTTAATCCTGAAGAGCCTTCCTATTTTGCATCATAAGCATCC
TCCCCTTCAGTGTTTAAAATCAATCTATAGTTGATGGTTACATTTGCAAC
GTTTGCTCCGATTATATCTTACAACTTTTCCGGCTTCCATAATACTCTTT
GCTAGTCTAAGCTTAACTAAAAGATCAAAcgacattttttatttgtaata
tattttctcatcGTAAGATTGGTATTTCTACTagagaataaaaaaaagaa
catttttgtaATAGTATTTCGATTTTATTATAAGTTAGAAATTATTATGT
GACAATACTTCgctttgtttttttaataaccCAGCATTCTCGTTGACAAA
GCAGGGCAAAGATATATTTCCAAGCCTTAATATTTccacatttctttttt
tatgataacT
Run BLAST on NCBI

protein sequence of TCONS_00008205-protein

>TCONS_00008205-protein ID=TCONS_00008205-protein|Name=TCONS_00008205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
MAENEGKRKLSEDEERPSENGDIKRLKVCEPQELGTLLYSGLTDYTERND
SAISKSPALQWSPFQYESLKGIKIRKVSTGPVSYHTLAISEDYKVYSWGY
NNKGQLGHGDCRNRRNPTLVESLSGYKVVDVATGRMHSLVLTDEGQVFAF
GDNSSGQCGVGSKDSQMSNPKRIDYDGASIVKFACGSEFSLILDDLGTVY
SFGHPEHGQLGHGTDSREIVAGKGEVFHFEHSPIPITSYREIDDGEVIFH
GQPRIVDIQCGNNHSCAIDEKQRIFTWGFGGYGRLGHNSTQNEMVPRLMK
CWYRITGRADGGIIRVACGSQFNIVQTTVAKCSYYFGQINMNGEAAMYPK
SIDDLQGWNVRRVVCSMRGWAALADDSVIAAQCSPGFGQLGMGFNKKSSA
RPLLVEPFEKMKVHHLGLGYMHGVFLVRNETEKDEKEMEKFEILSFEDND
KKVEEAPPAKGKGRGKAASKGKATARKAAPGRKKK
Run BLAST on NCBI

transcript from alignment at sc0000082:569946..581919-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008205 ID=TCONS_00008205|Name=TCONS_00008205|organism=Clytia hemisphaerica|type=transcript|length=11974bp|location=Sequence derived from alignment at sc0000082:569946..581919- (Clytia hemisphaerica)
CAAACAAGCTGAAGATATTGCCATCAAATGAACACATATCTTTCTAAGGA
AACCCAACCACGGTTCGAAAGTGTGGCGTTCTTCTTTTTGCGGGAAAAGC
TGTAAAAGTGGCGGGAGAAAGACGAACTGAAAGTGAAGAAGAAAAGAAAA
GGCAATTATTTATAAGAAAAGATCAACAACAATCACAATCAAACCTCAAA
GGTATGTCTAGGTACAGTCAGACAGTTTACCATCAATGAAGCATATTGAG
TTCTTATCATTAGTGAAAAATTTTTAGTTGCTTTTTTCACCTTTTTTTGT
CTGTCTTTCTGCCTGTCTGCTGGTTGATGGCAAACGATCATCAATCAATC
AATCCTCCAGCCAGCTACTTTCTTATATTATATTCTGGTTTTCTGACTTT
CTCAAGTGTTTATGAGTACATTAAGAGCTCCTAAATCTAACTTAGAGTTC
TAATCTAATGGCCCGGGGACAACGCGGTCATCGAAAAAAAATGCTCTGTT
CGCGTCGCAACAGCAACAGGTGTTAAAAATGCATGTGGGCGGACGGGCGG
TCAAAAACATTCCCGGGTTTTTTTTAATCACGCCAGTAACTCAGGGGCGG
GTGGTAACGCGAGCAAAACAATTTTTCGATGGTCGTCAGAGCAATTGAGA
AAAAAGCTATACTTTAAAAGAACAAATTGCTTTTCCCAGTTTTTATTATT
CCGCATCTCCGCACCGGAAAATCAGCGGAAAATTTGATGCGGGTGGGTGA
CGCGAATAGAACAATTTTTCGATGACCGCCTAAAGGTTTTGTTTTTAAAT
AAGAGTGATATCGTTTGCCTTACTTGTTACTACCTGACTACCGTCAACTA
TTCCGGACGGTACTAATCGATAAATTCAACAAAGTAAGCGAACAACCACT
TATCAATTAACAGTCGATTGTCGAGTACCAAAATTTCAAAAAAATTGTGA
GTATAATTCGATCACTTTCTTCTTAACCAGTCAAGATAGCGACTCCAGAA
GTCATGCAACTTTCCTTGACGTCAAACCAAATGGTTCATTTTTCCGTGAA
CTTTGAACCCTTCGAACTTTTTTTCTATGTATGCTAAATGCGTTCCGGTT
TTTACTAAATGAAAGCTCTTAGCTTTCCAGCGGTATATAACACTGTGGAC
ACGGGCTAGACGGCAAATTGGTAAAATGCCGAACGTTTTGCAACATTTTG
AAAATTGTTTGCCGACGGGAGAAAAAAAATGTGCAACTATCGCTGAAAAA
ATGTTTCTGGAAACAGAGTTAAATGTACACACATTTGAAGGCTGAAACTT
TGTATGTTTATCAGAAAAAGGGTGAGGAATTCAAAAATCACATTCGCTAA
TTTTAGTTCTTTCATTTTCATGTAGTTTTTTTCANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCAGAAAAACTTATTCTTTATTCATAAGTTTT
TGTTCCTCCATTTCCAGAGGCCCCTTGAAAATGGGTCCTACCACCTTTTT
TGACTCATTTCAACCTTTTCAAAGCTAATTTTCTTCAAAAACAAAAACAA
TGCAATGTCTTCTTTTTTCAAAAAAAGATATATCTTTCATTATTTTGATA
AATATAATAAATATTTTACAAATATTTTAATATAACAATATTCTAACACC
ATCAAAGAATTCTCCCTCCAAATTTCAGGTCTCTAGCTACACTAGAAAAA
GAGATATGCAAAAAGTATCCAAAATAGCAATCAACATCCTAATTAGGATA
CTAAAAACCCGTATTTTTCACCAACCAGAGACACCTGCGCCATCTTACCA
CTTCCAAGATGTAAATAATAAGCAAATGAGATTGTGTACTGAATTTCATC
AAGTTTGGCTGGCGGAATGCAAAACTATAGCCCAAAACACCACTCAAATG
TGCTAACTAGCATACACAAACGCTTTTTTTGCGCGAAAATCGGACGGCCA
GAGAAATTGCTTGAACTTTGATAACCAATTGACAACTTCGATGACCAATT
ACTATGATATATCTTTAAGAAAAACCAAAAAAACTGACCTAAAACCAAAG
CACAAAAAGAAGCCCCGCCATAAAAAGTGACCCCCTTATTTCCCAGCCAT
TTTCCCTGCCATTTTGTGTGCCTTCGCCCTGGGTTTCCTCAAGTAACTCA
TATCGTGCATTCCAATAGGTGGTCACTGACCACCTTTGATTGTTATCAAC
CATTACCGTGAGTGGTCCTAAATCAGACATCCCTGCCTAAATCCGATGGG
GTCTACAGATACAAACTAAAATAAAAACAAACCTTTCGCTGTGACGCAAT
GAAGATACCAAAGTGTCAACTAAACTGAGAGATTTGATACACTGAACCAA
TTGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAATGCCCAAAATGTGACAGAGCCCA
ATTTTCGAAAAAGAAATTTTTCCGGCCGCTAGAACCGGAAATGTCCCGAA
AAAAGCGGTTTTTTGAGATTTTCTCAGTTTTATTTTCTCTGAATGATTGA
TTAAAGTGTCGATATTATTTTTCTTTCACCGTTAAACATCGATGTGTTTC
TTAATTGCTTTCTCCGTTCCAATAGATATATAAATCGAAATTTAAAATTA
TACATTACTTCCATTAAATTCTAATTATTCGTTTTATAAATAGGTAGGTC
CATTAAAGTATTACTTGTTTATTACAAAATTGTTAACGTTTTAAACACAA
GCAACGGATCTGAATAATAGAGGTATATAATTATTTTTACAACTCACACT
TTTTTATCACATTAATCGACATCTTGACATTTAAGTCATCTTGTTAGATG
TTTTGATTTAGGCAGGGCTGTCGGAGATTTAGGACCATTCACGGTATTGT
ACTTCGATCACAATCGAACGTTCGACTAGTACCGTCTGGACTGCTCTAAC
TTGGGACTATCTGATAAAACATGGGAAGTCATTTGATTTGAGTTAATGAA
CGACGTATAAAGAAATACATGATTTCTCTTTCGCATTGAGTAGGCTAGTT
CTAGTTCTAGTTTTATATTTGCATAAGACAAAAAATGCCTAATCTCGCAA
ATTCTACGTAAAAATACAAAAATGAAAAGGTTTAATAGCTAAGATAAAGA
TATAAAAAATTAGAATAAATAGGTAATTTATACAATTTTAAATTAGATTT
ATTAGATTGAAATTCATAAAAATTTAAAAAAGTTCAAAAATAGTACAGTA
ATAAAAAGTGTGTTAAAAATAGTACACTAATAGGGGATGCACAATTAGCA
TGGTTTTAAATCGAAATATGAAAAAAATATGTAGTTGAAAACACACGCGN
ACACTAATAGAGGATGCACAATTAGCATGGTTTTAAATCGAAATAAGAAA
AAAATATGTAGTTGAAAACACACGCGAATGTGTGGAACGAAGAAGATTAA
ATTAGTGGCAAAATGATGGAGCGTTTGACGTCACTCGTGTGGCAAGTTAC
ACACTCGTTATTTGATAATTCTATCGGCCGATAGGCGGTTAGGCGGCAAT
CACATTTATCTTCATTTCGCGTCCTCCTTGGGTCTAAAACGTGAGTCGGT
TGGTCGGTTGTAAAAGTTTTTGGGTTTTTTGACCTCCATCATCCATTTTC
GGAGTGTATTCTTGAAGGAAAGCGCCAGCCAGCCAGCAGCCAAAAGAACT
GCGTGTTATGGGTGGNCCGAGTGTATTCTTGAAGGAAAGTGCCAGCCAGC
CAACAGCCAAAAGAACCGCGTGTTATGGGTCTTTTCAAATTATGACCTTC
GAACACTGTGACCTCTGACCCAAAATGGCGCATGTAATGATAAACAAAGT
CAAAATGCCGTAAATGCGCTAGAAATCGCTCGCAAAAAATCGGCAATAAT
AAAATTTTTGAACGAAGAAAAAGTCATTGACAGAAAAAATCAGACAAATT
TACTGACTCACAGACTCAATTCTACTCAATTTTCGAGAGTTGTTCAAGCG
ATGCGAAACGAAGATATTCGTGATTGCCGCCTTAGGCAGCGCCCGTTCTT
CAATTCTCCTATCGTCGTCCAGTCATTTTGAATGAAAACAAAAAAGTTAA
AAAGGGCGCGCTATCAGTGAAAGTTATCGTGACATGTTATGACAGAAAGT
ATGATTGATAAATTTGGTGGAGTTATCAAAACAAATTTGTTGTCAAAGAA
ATTTAACAGTAAGTGAAAATACAGGCCAGATATCAACAGTCCCATGTTTC
GACTAATTGTCCCAAGTTAGAGCAGTTGGCGGTAATCAATTTTAATTCAC
AATCTTTTTGGACCTACCCTAAGGTAGTCCTTTAAATTAACCCTTGTCCG
TTCGTCCGTTCGTTCGTCTGTTGCCAGCTTTTCTCGGGATCGGCTCATTA
GTTTTTTCTAATTTTTTGCACAATGATGCAAAATGGCAATACCCAAAATG
TGACGGAGCCCGATTTTCGAAAAAAAAATTTTTCCGGCCAAAAATGGCGG
AAATATGCCGGAAAAACTGGTTTTTCGGCATTTTCTCGAGATTTCATCAT
TAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTATTAACAATGCCCAAAA
CATGGCCGAGTCCGTTTTTTGAGAAAAAATTTTTTCCGGCCGAAAATGCC
AGAAATATGCCGGAAATCGCCGTCTTTCTGGATTTTCATTGGACTTTTTC
CATATAATTGGTTGTTTTTCATTCAAAAACATTGTTAATAGCAATGCCCG
CCATCAAGCATGTTTCAATTTACAATAAAATTGATTTTTGAAGCCGGAAC
TTTCTAAAAATCGCCGGAACAGCCGATTTTCGCCGGAAAAACAGTATTTC
TTTAATTTCTTGAGCTGTACTTTATATTTTTTCATGAAATTTTGCACACT
GATGCAAAATGTCAATACCTAAATTGTGACGGAGCCCGATTTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCAATGATAAAATTTAATGTTTTATGCA
TTTTCGCAAAACGCTATATCGTCTGACTGATTCTTTTAATTTTTCTCCTT
ATTGCCTTATTATCTAGCTTTCATCACCAGGTAGGTCCATTCAGCATGTT
GCTTGTTCACATTGATTTTACACGAATGTGGAGCAAGATTGGTCAGAAAG
AGGAATAGAAAAGCAATTTTTTTGCTTATATAAGCATAATATAACAATAG
ACAGACACTGTCCTGATATAAAAATAAAATGTGTCTGATATGAAATGGGA
ACACTTATGTAAAAATAAAACCTTTAAACTGTATAAACTTAACTCTTCAT
ACAAAAATTACAGGAAAAGCATATTTGGACTTTGTACCCTATGCTGCACG
CAAGCTCTTAAGCAGGACAAAAATCAGCTTTTTGAAGTTTGCAAAAAAAC
GCCACATAGAAGATCTTTCAAATTCATTATGTAAATAGAGCAGTAAAAAA
ACTTTTCCATTTTCCCTTTTTTTGCAAAAGTTCTAGTAATGAAAATAAAA
GGATAATGATAATTGAATTCTATCCACCGATGATCCACGGCACTATCTTA
AAGCTAGAATCGCTTCGCGTACCCAGCGCTTGAGAAAATGATTGACCGAT
TAAAGTTTTTCACCTGCGCGGGAGCTCAGGGGCGTTCTGCGTTCTGCGAT
AGAGTTCTAGGCTCAATCCTCGGACCAAGCTAAAATGGTAGACTTAGCTG
TGACAGATCATTTTGTCAAGTTGTTGGAATGTTTATAAGGCTCTTGACAG
AAAATCTTTGTTTTATTGTCAATGATGACAGTGCCGTTATTCATTTTGTT
AGATCTGACATATTGATGTTTGTAAGTGCACTTTTTAGTTTTGATTCATA
TTGAAGAATCATATTCTGGTTTTCATGTTATCATGATTATCATGTTTTCA
TGTTTTCATTAGATGCTGTTTTAGAGCTTTAGAGCTAGCCTGATTAAAAA
GAAATTGTTTACAAAATTCCCTCTCCAAGTTGAACAATAATCAGTTGCGT
ATTTAGGGTAGGTTAAGAGATTTAATTAGGTAAATTCAAGACATAAGAAA
TAATCTTAGGGGTACAAAATCAACAAACTCATCTATATTTCTTATTTTGT
GGAAACAGACATTGCTCCACATCAGTATCTATTTTTTCACCACAAGCGGT
TAATTAGCAAAAAAACGTACTCAAAACGTGAGAAGGGTATTCGTTGAGTA
AAAAATTCTCATAAATTGCAAAGTGTGATACAAAATACACGTAAGCAAAG
CTGAATCCCGAACGAGATGAAAAGAATATCAAACCTCTCCAAGAACCAGA
ATTGGAACCACTCAGCTTCAAATTTTTGACCTACTTGGCAAAATTCCTAA
ATACGCCACTGATAATGTAGTAGGGTGGACAGGGCAAAATTTTCCTCTCA
ATTTTTGAAAACCAAACTAATTTTATTTGAAAGTCCTTACCTTTGTGAGA
AAAATGAAGAGTCATTTATTAAAATTGGTTAAGTATTTCCAAATCAAAGT
TATTCCATATTCAAAACACAAAAAAACACCTTTCCAAAGAATCATCTGCT
TACCCCGCGCCAGCAAGAAATAATTTTTCGAAAGCACCAAAAATGGCGGA
CAAAATTTAGCCTTCCGCATGACTAGGGGTGCAGAGTTTGGCTGACGCGG
TCTTAAAATCAGCCCGATGACTATTAAACTTTGGCTTATTGTTAATGAGC
TGGAAATGATAGCTAAAAACAAATTTTAGCACTAGAAAGCTGAAAACCTC
AGCTTTCAGATGGTGTATGCTGATAACATGAAAAAATTCACAATCTTGTC
GTAAAATAGCAATTTCTTCTATATTTCAAAATTCCAGACAGCCTGTAGAT
TTTCAAATAAAGCAGCATGTGATTAACCTGAGATCAGATTGTGATTGTTT
TCTGCCCACCACGCTGAAGCTCTAAAGGGATGGATGAAAACAAACAATTA
TGACAAATATGCTATCTCAAAATCGTAAGGTCAGCTTTAAGTTGTGTTTT
CACCTTGACGTTGAAAAACATCAATATCTTTGGAAAGAAAAGATATTTAA
ATGCAGTTTTTTTTATTTGTTCCCCTGGTAATTTCTTTCTGATTGATTAA
AAAAAAAATGAAAAGATTTGAATGATTTAAAGGTAAGTACTAATGCATTA
AGTTCATTTTGATAAATTCTTCCTTGTTCCGTGCCAAAAATCCTGACGAG
TGCACACCCTAAAAGGCAAGATGGCCATGGGGCAAAATTTTCCCCTCAAT
TTTTGAAAACCAAACTAATTTTATTTGAAAGTCCTTACCTTTGTGAGAAA
AATGAGGGGTCATTTATTAGGATTGGTTAAGTATTTCCCAAGTTATTTCA
TATTCAAAACACAAAAAATCACCTTTCCAAAGAATCGTCTGCTTACCCTG
CAATACGATGAATTTTTTACTCAAACTTTAATCGTCAATGGAGTTCAATT
AGTTCGATTTTGCGATTGGTTCGACAAGTTCGGTTGATCAGGTCTGGTTT
CACGCACTAAAATTCCATTGCTACTTTTCTACTAGAAAAAGACCAGAACT
TCGAGTAGTTGAAAAATGACTTGTCTACCTTTGTTTTGGAGATTAGCATA
TGGTATCCACTTAAATTCCTCAATTCTTTTGGAAGGGAGTTGAACAAGAT
TGGCCAACCGGTCAACAAGAAATTATATTGGATAGTCTGTAAGCAGAGGA
GTGTAAAGTGATGGAAAAACAGCTTTTTGAAAACAATGGGAATACGACTC
GTCATATATCAGGTTCTTTGCCCTTAAGGGAGTTTGTTTCAGGCAACAAA
ATGGTGTAAAAATCTTTACTTCACTTTTTTAATCATAGTATATACATGGA
GGTAATAAGAAATAGATGGAGAATAAATGACTCGGTAATGGCCTAAGTTA
TCGTTAAATTCTTTTATATTTTCATTCAAATCGGTTTTCTTTGATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTATAAGAACAGAAGTGAGAATGTTATCCTGATTGA
AATAAACATTTTATGCAAAAAGTTCTTGTTCAAACGCGATACAAAAATAA
TTTTCTCGTAGTAAGGTTGCAATAATAAGGTTGGAATATTCAGGGACAGA
CTTTGAAATCTTGTAACTGAACTAAATAATTCACTTGAGAAGAAAGTGCT
TCTCTAAATTTGCCACTTTTTCTTGATCTTTGTTTGTCAAAAATAAAAGT
GAGGTGCAAGAGAAAAGGCTATGAGTAATCTAGTATGCCGTAGTTCGAAC
CCTCCTTTCTTAAGAGGGGTCATCACCTTCTGGAAAACTGAAGAATGGAG
GTTGTCAAAAATCTTCCTGAAAAAAAGGGGGGTAGCAAAGAGAGGGAATT
GTTTAATAAGGGGGTATTGCAGGTATTTTCACCAGAAATGTTGTGGAATT
TTTGGTCTGAAAGGAAAGGACATTTGCATTTATAGGCATTTTGGAAGATT
GGTGGATGCCAAGAATAGGGGGATCTACTATGGGTAGCATACCCTCTTGG
TGTAAACTTCTTGAACATTTCGATCCAAAATTTTTATTCTCATCTCACCT
GCCCTTGAATAACAAAAAAAATGTCAAATGTTGTACATATGTAGCTGTCT
GGAAAAGAATTTGGCAAAAAAATACTTTTTGAGGGATAGAGGAGGTATCT
TTAGGCAAAAATTCTCAAGCCATATGATTGCCCCTTTCAAAAGTTCTCCT
TTTTTATGTTTTTAGTGATTCACTGATTGGTCATCAGAATGGCTGAAAAT
GAAGGGAAACGAAAACTGAGTGAAGATGAAGAAAGACCATCTGAAAATGG
TGACATCAAACGCTTGAAAGTCTGTGAGCCACAAGAGCTTGGTACTTTAC
TGTATTCAGGATTGACAGATTATACTGAGAGAAATGACAGTGCAATTTCC
AAGAGTCCTGCACTTCAATGGTCACCTTTTCAATATGAAAGCCTCAAGGG
AATCAAAATACGTAAGGTTTCAACAGGACCCGTTTCTTACCACACCCTTG
CCATATCAGAGGATTACAAAGTTTATAGTTGGGGTTATAACAACAAAGGA
CAACTTGGACATGGTGACTGTAGGAATCGGCGAAATCCTACTTTAGTGGA
ATCACTATCAGGATATAAAGTTGTAGATGTGGCAACAGGCCGCATGCATT
CCCTTGTGTTGACAGATGAAGGTCAGGTCTTTGCTTTTGGTGACAATAGC
AGTGGCCAATGTGGAGTTGGTTCTAAGGATAGCCAAATGTCCAACCCTAA
GCGTATCGATTATGATGGTGCATCAATCGTCAAATTTGCATGTGGTTCTG
AATTCAGTTTGATTCTTGATGACTTGGGAACTGTTTACTCCTTTGGCCAT
CCAGAGCATGGTCAGCTTGGCCATGGAACTGATAGCAGAGAAATTGTTGC
TGGAAAGGGAGAGGTCTTTCACTTCGAGCACTCACCCATTCCAATCACAA
GTTACCGAGAAATCGATGATGGAGAGGTGATTTTTCACGGCCAGCCCAGA
ATTGTCGATATTCAATGTGGAAATAATCATTCTTGTGCGATTGACGAGAA
ACAGCGTATTTTTACATGGGGATTTGGTGGCTATGGTCGTCTTGGACACA
ACAGTACCCAAAATGAGATGGTTCCACGACTGATGAAATGCTGGTATCGA
ATCACTGGCCGAGCAGATGGTGGTATTATTAGAGTTGCATGTGGCTCACA
ATTCAATATTGTTCAAACTACTGTTGCAAAATGTTCATATTACTTTGGCC
AAATCAATATGAACGGAGAGGCAGCAATGTATCCTAAATCCATCGATGAT
TTGCAAGGCTGGAATGTACGTCGCGTTGTATGCAGCATGCGTGGTTGGGC
AGCTTTGGCTGATGATTCGGTTATTGCTGCTCAATGCAGTCCTGGTTTTG
GTCAACTTGGAATGGGTTTTAATAAGAAGTCATCAGCTCGACCACTTCTT
GTGGAACCATTTGAAAAAATGAAGGTTCATCATCTCGGTCTTGGTTACAT
GCATGGTGTTTTTCTTGTTCGCAATGAAACAGAGAAAGATGAGAAAGAAA
TGGAAAAGTTCGAAATCCTCTCATTTGAAGACAATGACAAAAAAGTTGAA
GAGGCTCCTCCAGCCAAAGGAAAAGGGAGGGGTAAAGCAGCTTCTAAAGG
AAAAGCAACTGCTAGAAAAGCTGCACCTGGTCGCAAGAAAAAGTAACTCT
GTTAAGAGGGCCTCCTTCTCTGTATGAACTTTATTCATATTTTTTTTTCA
TTTTTCGTTTTTCAACATAGGGATGTAACTAACTAGAAACTTTTAATTTG
TTTTTTTGTCATTGCTGCACTTCAGCTTGAACTTTTGATGGATAATTATA
TCCGTTTTGGATTCTTACCACCATCAATCCCACCTCCTACCCCACCCTAC
CCCACCCTAGTTCGACATTGAATTTAATCCTGAAGAGCCTTCCTATTTTG
CATCATAAGCATCCTCCCCTTCAGTGTTTAAAATCAATCTATAGTTGATG
GTTACATTTGCAACGTTTGCTCCGATTATATCTTACAACTTTTCCGGCTT
CCATAATACTCTTTGCTAGTCTAAGCTTAACTAAAAGATCAAACGACATT
TTTTATTTGTAATATATTTTCTCATCGTAAGATTGGTATTTCTACTAGAG
AATAAAAAAAAGAACATTTTTGTAATAGTATTTCGATTTTATTATAAGTT
AGAAATTATTATGTGACAATACTTCGCTTTGTTTTTTTAATAACCCAGCA
TTCTCGTTGACAAAGCAGGGCAAAGATATATTTCCAAGCCTTAATATTTC
CACATTTCTTTTTTTATGATAACT

Coding sequence (CDS) from alignment at sc0000082:569946..581919-

>TCONS_00008205 ID=TCONS_00008205|Name=TCONS_00008205|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0000082:569946..581919- (Clytia hemisphaerica)
ATGGCTGAAAATGAAGGGAAACGAAAACTGAGTGAAGATGAAGAAAGACC
ATCTGAAAATGGTGACATCAAACGCTTGAAAGTCTGTGAGCCACAAGAGC
TTGGTACTTTACTGTATTCAGGATTGACAGATTATACTGAGAGAAATGAC
AGTGCAATTTCCAAGAGTCCTGCACTTCAATGGTCACCTTTTCAATATGA
AAGCCTCAAGGGAATCAAAATACGTAAGGTTTCAACAGGACCCGTTTCTT
ACCACACCCTTGCCATATCAGAGGATTACAAAGTTTATAGTTGGGGTTAT
AACAACAAAGGACAACTTGGACATGGTGACTGTAGGAATCGGCGAAATCC
TACTTTAGTGGAATCACTATCAGGATATAAAGTTGTAGATGTGGCAACAG
GCCGCATGCATTCCCTTGTGTTGACAGATGAAGGTCAGGTCTTTGCTTTT
GGTGACAATAGCAGTGGCCAATGTGGAGTTGGTTCTAAGGATAGCCAAAT
GTCCAACCCTAAGCGTATCGATTATGATGGTGCATCAATCGTCAAATTTG
CATGTGGTTCTGAATTCAGTTTGATTCTTGATGACTTGGGAACTGTTTAC
TCCTTTGGCCATCCAGAGCATGGTCAGCTTGGCCATGGAACTGATAGCAG
AGAAATTGTTGCTGGAAAGGGAGAGGTCTTTCACTTCGAGCACTCACCCA
TTCCAATCACAAGTTACCGAGAAATCGATGATGGAGAGGTGATTTTTCAC
GGCCAGCCCAGAATTGTCGATATTCAATGTGGAAATAATCATTCTTGTGC
GATTGACGAGAAACAGCGTATTTTTACATGGGGATTTGGTGGCTATGGTC
GTCTTGGACACAACAGTACCCAAAATGAGATGGTTCCACGACTGATGAAA
TGCTGGTATCGAATCACTGGCCGAGCAGATGGTGGTATTATTAGAGTTGC
ATGTGGCTCACAATTCAATATTGTTCAAACTACTGTTGCAAAATGTTCAT
ATTACTTTGGCCAAATCAATATGAACGGAGAGGCAGCAATGTATCCTAAA
TCCATCGATGATTTGCAAGGCTGGAATGTACGTCGCGTTGTATGCAGCAT
GCGTGGTTGGGCAGCTTTGGCTGATGATTCGGTTATTGCTGCTCAATGCA
GTCCTGGTTTTGGTCAACTTGGAATGGGTTTTAATAAGAAGTCATCAGCT
CGACCACTTCTTGTGGAACCATTTGAAAAAATGAAGGTTCATCATCTCGG
TCTTGGTTACATGCATGGTGTTTTTCTTGTTCGCAATGAAACAGAGAAAG
ATGAGAAAGAAATGGAAAAGTTCGAAATCCTCTCATTTGAAGACAATGAC
AAAAAAGTTGAAGAGGCTCCTCCAGCCAAAGGAAAAGGGAGGGGTAAAGC
AGCTTCTAAAGGAAAAGCAACTGCTAGAAAAGCTGCACCTGGTCGCAAGA
AAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004606XLOC_004606Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008205-proteinTCONS_00008205-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008205-exon-sc0000082-1575043694:581719..581919TCONS_00008205-exon-sc0000082-1575043694:581719..581919Clytia hemisphaericaexon
TCONS_00008205-exon-sc0000082-1575043694:569946..572054TCONS_00008205-exon-sc0000082-1575043694:569946..572054Clytia hemisphaericaexon
TCONS_00008205-exon-sc0000082-1510915933:581719..581919TCONS_00008205-exon-sc0000082-1510915933:581719..581919Clytia hemisphaericaexon
TCONS_00008205-exon-sc0000082-1510915933:569946..572054TCONS_00008205-exon-sc0000082-1510915933:569946..572054Clytia hemisphaericaexon
TCONS_00008205-exon-sc0000082-1491911889:581719..581919TCONS_00008205-exon-sc0000082-1491911889:581719..581919Clytia hemisphaericaexon
TCONS_00008205-exon-sc0000082-1491911889:569946..572054TCONS_00008205-exon-sc0000082-1491911889:569946..572054Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:569946..581919 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
160.503	148.002	170.506	162.268	89.0381	75.1456	64.478	69.164	59.3232	59.892	36.7307	35.0315	24.0668	21.2148	28.4203	37.2392	58.8309	42.9673	7.21603	9.71118	34.6611	32.276	75.1605	69.2472	45.3428	49.6094	25.4465	20.4853	37.7469	41.7808
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II
Blast
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BLAST of TCONS_00008205 vs. Swiss-Prot (Human)
Match: RCC2 (Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 1.933e-88
Identity = 157/427 (36.77%), Postives = 246/427 (57.61%), Query Frame = 3 
Query:  294 KRLKVCEPQELGTLLYSGLTDYTERNDSAISKSPALQ-------WSPFQYESLKGIKIRKVSTGPVSYHTLAISEDYKVYSWGYNNKGQLGHGDCRNRRNPTLVESLSGYKVVDVATGRMHSLVLTDEGQVFAFGDNSSGQCGVGSKDSQMSNPKRIDYDGASIVKFACGSEFSLILDDLGTVYSFGHPEHGQLGHGTDSREIVAGKGEVFHFEHSPIPITSYRE-IDDGEVIFHGQPRIVDIQCGNNHSCAIDEKQRIFTWGFGGYGRLGHNSTQNEMVPRLMKCWYRITGRADGGIIRVACGSQFNIVQTTVAKCSYYFGQINMNGEAAMYPKSIDDLQGWNVRRVVCSMRGWAALADDSVIAAQCSPGFGQLGMGFNK-KSSARPLLVEPFEKMKVHHLGLGYMHGVFLVRNETEKDEKEMEKF 1547
            +R+K+   +  G LL  G T++       + K  A         W P +Y  L G+++R V +G  + H+L I+ + K++SWG N KGQLGHGD +    P L+E LS   +V  A GR H+L LT+ G VFAFG+N  GQ G+G++   + +P +I Y+G  I K ACG+EFS+I+D  G +YSFG PE+GQLGH +D + I   +   +  E  P  +  + E   DG+++      + D+ CG NH+  +D ++R+F+WGFGGYGRLGH   ++EMVPRL+K  +   GR   G  ++  G   +   + V    +++G  N + E+ MYPK++ DL GW +R + C        AD+S I+   SP FG+LG G +K KSS     V+  + +    + +GY H + + R+E+E ++++++K 
Sbjct:   93 ERVKLEGSKCKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPHRYGCLAGVRVRTVVSGSCAAHSLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKL-FDFPGR---GASQIYAGYTCSFAVSEVGGL-FFWGATNTSRESTMYPKAVQDLCGWRIRSLACGKSSIIVAADESTISWGPSPTFGELGYGDHKPKSSTAAQEVKTLDGIFSEQVAMGYSHSLVIARDESETEKEKIKKL 514
The following BLAST results are available for this feature:
BLAST of TCONS_00008205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RCC21.933e-8836.77Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2[more]
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