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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007871 ID=TCONS_00007871|Name=TCONS_00007871|organism=Clytia hemisphaerica|type=transcript|length=1517bp
GTTTTACAACGTTGACATAAACAATGACCTTTCTTACAGAGTACACCCAG
TCGCAAACGATCTTTTGCAATGCTTATGAGCTAACGGACGAAGGTAGACG
AAACGAGAGCATTCCAATTTCAAATGGAGCATCTTcaataaattaaataa
taatcaATACGATATGTACAATCAAGATGTTATAAATGTAGGACgatata
caaaaaagaaaagttgcAGTGACCAAGAACAATCACGCTCAACAGATATT
TAACGTCCTCAAATTGATCACGTGATATTGTTCAACCaatgaaagttgtt
tttatggCGAAAAGAATTAAGATGAAGGAAACATAGTCCATTACTCTCTC
CCTGCAAGATGACATTGGTACTGAAATAGAGTACTACCTAGACGATGCAG
GATGCTTGATTAATGGATGACGGATAATATGTTGCAAGACTACTTTCAAG
TAACTTATGGCAAACCTGCATGTAAAACGAACTACAAAAGACATAAAGGA
TATTAATGAAAGGAAAGCTCTTATTTTTGTTAGAATAATTGACTCATTTC
TATGTAAAGCTCTCTAAAAActttgaacaaaatatttgtTGCCCATTCTC
CAAAGAGATGTTACTTGACAAAACAGAAACACTAAGGCTTTGCAATTTCT
GTTTTAGAAGATTATTTTCCATTGAACCAATCAAATCTGTTTGAAGACGA
GGTCAACTATAATTTTGACATACAGTAGACATGTTAAGCACAAATTTGGT
CTATAGAACAGACTTTGTATAAATGAACTTTATGACAATTTTACTATTAA
ACCCTTTTTTTCTGCTGTGGAAAAGAACTTAATCGAAGAGAACAACCTTC
ATTACATGCTGGTGCAATGTATAAATctataaatttttgtaaaagaagcA
GATTTATtgactatttttgaaaattatttctggAATTAAATTATTTATGC
CGTGAAGAAAGGCATTAGTAACAAAATTAGACAAAAAAGGTATTTTAACT
CGAGTTTTATGCTGTTTATTTACTTTCCccgtagactggagtcgtttata
atgcgttaatttttttttctcaagattttttttgagcgggaaaaaattat
aattgcaatattaacacttttcttttgtttggactaaaattgttccctcc
attactttttgctttatttctactatgtctgatttagtcgtctagcttgc
tagattACTTTACCCATGGTTATCATCGAGGGGAAGAAGTTTCCAAATTC
TATCTAGATTGCCCAGTTCGAAAATGTCACCTTACCTATAGGGAGGATAG
TTTTATCTATTATCAACCTTTctagcgcgcaacatttttgaaaaatgtga
aaatttccgattttcctttgaaatctaaaatttctggCATAAAAGCATGA
GAGTTAGAGAGTGGTTTTGGTACCATCGGAAAAgtatttttatactcttt
caaaaaagaatttggtTTAAATAAAGTGGTCTGGCACTTGGTATATTGGC
GTATACACGTCTCTCGG Run BLAST on NCBI transcript from alignment at sc0000080:125614..127746- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007871 ID=TCONS_00007871|Name=TCONS_00007871|organism=Clytia hemisphaerica|type=transcript|length=2133bp|location=Sequence derived from alignment at sc0000080:125614..127746- (Clytia hemisphaerica)
GTTTTACAACGTTGACATAAACAATGACCTTTCTTACAGAGTACACCCAG
TCGCAAACGATCTTTTGCAATGCTTATGAGCTAACGGACGAAGGTAGACG
AAACGAGAGGTACGCATATCCATATACACACAACAAACAAATACCCTCTG
CCTAACACTAACACTAAACTTCTTCACTTTTACAACACATAGACAGACAC
TAAACTTAAAGTAAATTTAGATCGAAGAGAAATAAACAATCTTGGGGGAA
ATTTCTTCAAGTTTGTCTTCAAACTCGAACCCAGTCCCTTAGTTCACTTT
TTTATAATTCTGATAGCGCCAACGTCCAACAATAAAATCAAAAAGTGGTG
CAAATGGCTCTGGGTGAGAGATTGTTTGTCCTAGATTTCTTAAAAAATCT
CATTTAGCGATTCCAGGACTAGCAGCTCTAGCACTATCTCCAAAAGAAGC
ACAACTGATTGAAATGAAATCTTCTCGACCGTAGTCGCACGGTCAGGCGC
GTGTCACTTTATTATTTAATAAACTCGATCCAATCCTTATTTTACACTTT
TTTTTATTGTCTTTAGGTGCAAAAAAAGACTGGGACGGTTTTTAGGGTGG
TAAAACGGACAAAAAATGCCCGCGCGGCAATTGGCGACTACGGTCGAAAA
GGCGACTACGGTCGAAAAGGTGAATACGATCTACTCTACTTGTGATTAAA
TGATCCTTGCCTTCTTTCTTGCTAGCATTCCAATTTCAAATGGAGCATCT
TCAATAAATTAAATAATAATCAATACGATATGTACAATCAAGATGTTATA
AATGTAGGACGATATACAAAAAAGAAAAGTTGCAGTGACCAAGAACAATC
ACGCTCAACAGATATTTAACGTCCTCAAATTGATCACGTGATATTGTTCA
ACCAATGAAAGTTGTTTTTATGGCGAAAAGAATTAAGATGAAGGAAACAT
AGTCCATTACTCTCTCCCTGCAAGATGACATTGGTACTGAAATAGAGTAC
TACCTAGACGATGCAGGATGCTTGATTAATGGATGACGGATAATATGTTG
CAAGACTACTTTCAAGTAACTTATGGCAAACCTGCATGTAAAACGAACTA
CAAAAGACATAAAGGATATTAATGAAAGGAAAGCTCTTATTTTTGTTAGA
ATAATTGACTCATTTCTATGTAAAGCTCTCTAAAAACTTTGAACAAAATA
TTTGTTGCCCATTCTCCAAAGAGATGTTACTTGACAAAACAGAAACACTA
AGGCTTTGCAATTTCTGTTTTAGAAGATTATTTTCCATTGAACCAATCAA
ATCTGTTTGAAGACGAGGTCAACTATAATTTTGACATACAGTAGACATGT
TAAGCACAAATTTGGTCTATAGAACAGACTTTGTATAAATGAACTTTATG
ACAATTTTACTATTAAACCCTTTTTTTCTGCTGTGGAAAAGAACTTAATC
GAAGAGAACAACCTTCATTACATGCTGGTGCAATGTATAAATCTATAAAT
TTTTGTAAAAGAAGCAGATTTATTGACTATTTTTGAAAATTATTTCTGGA
ATTAAATTATTTATGCCGTGAAGAAAGGCATTAGTAACAAAATTAGACAA
AAAAGGTATTTTAACTCGAGTTTTATGCTGTTTATTTACTTTCCCCGTAG
ACTGGAGTCGTTTATAATGCGTTAATTTTTTTTTCTCAAGATTTTTTTTG
AGCGGGAAAAAATTATAATTGCAATATTAACACTTTTCTTTTGTTTGGAC
TAAAATTGTTCCCTCCATTACTTTTTGCTTTATTTCTACTATGTCTGATT
TAGTCGTCTAGCTTGCTAGATTACTTTACCCATGGTTATCATCGAGGGGA
AGAAGTTTCCAAATTCTATCTAGATTGCCCAGTTCGAAAATGTCACCTTA
CCTATAGGGAGGATAGTTTTATCTATTATCAACCTTTCTAGCGCGCAACA
TTTTTGAAAAATGTGAAAATTTCCGATTTTCCTTTGAAATCTAAAATTTC
TGGCATAAAAGCATGAGAGTTAGAGAGTGGTTTTGGTACCATCGGAAAAG
TATTTTTATACTCTTTCAAAAAAGAATTTGGTTTAAATAAAGTGGTCTGG
CACTTGGTATATTGGCGTATACACGTCTCTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007871-exon-sc0000080-1575043694:127638..127746 | TCONS_00007871-exon-sc0000080-1575043694:127638..127746 | Clytia hemisphaerica | exon |
| TCONS_00007871-exon-sc0000080-1575043694:125614..127021 | TCONS_00007871-exon-sc0000080-1575043694:125614..127021 | Clytia hemisphaerica | exon |
| TCONS_00007871-exon-sc0000080-1510915933:127638..127746 | TCONS_00007871-exon-sc0000080-1510915933:127638..127746 | Clytia hemisphaerica | exon |
| TCONS_00007871-exon-sc0000080-1510915933:125614..127021 | TCONS_00007871-exon-sc0000080-1510915933:125614..127021 | Clytia hemisphaerica | exon |
| TCONS_00007871-exon-sc0000080-1491911889:127638..127746 | TCONS_00007871-exon-sc0000080-1491911889:127638..127746 | Clytia hemisphaerica | exon |
| TCONS_00007871-exon-sc0000080-1491911889:125614..127021 | TCONS_00007871-exon-sc0000080-1491911889:125614..127021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:125614..127746 - |
Blast
The following BLAST results are available for this feature:
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