TCONS_00007866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007866
Unique NameTCONS_00007866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007866 ID=TCONS_00007866|Name=TCONS_00007866|organism=Clytia hemisphaerica|type=transcript|length=2501bp
TGGAGATTTGTCAATTTATACTCTTTAAGAATCTGGATTTTAGAATATTA
GAGAGAGATTTTGAGAGGCGGAGTAAAAGATATTTTTGGAattcaagaaa
aagaaagaaaaagatctCAGTTTGTAATGGATCAAAAGTTTAATAATAAA
CAAACTAATCTTGAGCCAAAACTCTTGAGCTCTGAAACTGTTTACTAAGC
TAATACTGTATGGGATTTATATGGAAGGAACTATGGCTTGCTGTGTTCAT
TCGATTAAGACTACATTGTGCGGATATATCCATGTGAAAGTTCGCTATAA
TCACACTGCCAGATACTCGGCTTGAAACCTGCTAAATCTCACAGCTCTCA
CTGTGTGTGAAACATAAGACAAATGAACTTTTGCGAGAATTCTTTTCATC
TTGTATTGTCTTGGCGCTATGGACAGCGCATAACTGCCATGCTATATACT
CCTTCAAGAAAGCTTCTTGTCATTTGatctaattttatttttctagaaGG
TTGTTACATAAATAAAGATTGGTTGACTTTGGGTTTTGTATATTTGAGTT
GTTGGAGAGGTTGTGTAAAGATGATTCAAAATATCATCTCTGATCAGGTG
AAtgacaaacaaaacaaagaacttCAAAAGAAGAATAAGAGCGTGAAGAA
GGATGtcaagaaagtgaaaaatatcaaaatggtgGATGGGAACGGGAAAG
TTGTGTACCGACCAATTCACCGGAACGAATTCGAGAGGCGGACAAGTATC
CGGATCAGTGGCCGTCATAAGGATTCGTACAACCGACTTTATATCAGGGa
tcgaaaatatttcaaacggtTATTGAAGGAGTTTAATAATGCCACTGAAC
AATTTTCTTTGCAAGATTTGATCAAACAAGACAAATATCAAAGCATGCTT
CAGCCTGGAGCAAGACATCATTTTATACCGTCCGGGCTAGCCAATGtaaa
gttgaaattttgtacTCGCTGTGAAGACGAGTCGAAACATGTTCTGATGG
AGAGATATTACATCGACACGAACGATAAAGCCCATTACCGGACTGTTTTA
TGCTACGGATGTATGGGTACCGTATTACGGAATCACAAGGAAATGTCAGA
ACCGGGAACTAAATTTATGGAATACTACTGacaaagattcttttgtttta
cataTAAATTTGGAAATATATTTCATACAGTCTATTATTTGTAAAATGCT
ACCTATAACCGAGCctataacaagcaaacaaaaaacgaaaaaacaaccAG
TGAAAGATGGCAAAAATATGTGTTTAGATGTTTGTCAAGACTGGCGAAAA
ATATTATTTCGGGTCTTATTTCAAAACAGTATTATCCGATATAGcagaaa
tatcaaaacaaaaacaacagcgTTTTGTGGCTGATGAACAAACTTCCGAT
CCTCGAGTTCCAACATGAAATGAAACACAAACTTAACAAACTACCTACTT
ATGTTTGGTAGTCGCATGAACCTCATACAAGGTCCTGACTGTTCCCTTGC
GTGGATATAAAAGTTTCAGAACCTATAACAAGTGTTGtcataaaatatat
tttgaaaagaattatAACTAAAACTAATCTAATTTTAGGGTGTTGCAAGG
CCGAGAAATTAGATTCCTGATAATGGTTGTCCGTTTAAAATATTGCGTCT
ATCAATTTACAACAGATTAATACACCCCGTGGCAAGGATCAGGTAGAACC
CGTTCCTTGTGAGAAAAGCGCTCAGAGTCTCGCCCATTTAAATTCTTATC
TCTACCAGGGAAAACATTAGTTTTCTGAATTTCAGCCCAAGTTTGAGTAA
TTATCAATCTTAAAGCAAGAACTTTTCCATTCTCCATCGAATTTGTGCTC
ACCAAGGGTAAAGGATTCTCACTACCCCACtgcaggcacgacggaagctt
tttatatctggtacggcgaatgaggaaatttaagcgattttatagcgatt
tgaccgacgaagaggaaaacttcgggtatNAGTGATCTCAATGTAGCCAA
TTTTTAGGGTGTTGCAAGGCCGAGAAATTAGATTCCTGATAATGGTTGTC
CGTTTAAAATATTGCGTCTATCTATTTACAACAGATTAATACACCCCGTG
GCAAGGATCAGGTAGAACCCGTCCTTTGTGAGAAAAGCGCTCAGAGTCTC
GCCCATTTAAATTCTTATCTCTACCAGGGATAACATTAGCTTTCTGAATT
TCAGCCCAAGTTTGAATAATTATCAATCTTAAAGCAAAAGCTTTTCCatt
ctccatcaaatttgtgcTCACCAAGGGTAAAGGATTCTCACTACTCCACT
GAGACAAGGGTGTATAGAACTAATCTGATATAATGACATCTCAAATTTTA
AACATCGTGATCTTGTAACATATTATAGTTAGAAGATTTCACTTACTTAC
TAGCTTCCCAGATTATTCTTTCAAATTATAACTTTGTACCTATTATAACT
GTTATGGCGATATTTTGTGATATATAAAGTATTCTGGCAATAAGAAGAGC
A
Run BLAST on NCBI

protein sequence of TCONS_00007866-protein

>TCONS_00007866-protein ID=TCONS_00007866-protein|Name=TCONS_00007866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MIQNIISDQVNDKQNKELQKKNKSVKKDVKKVKNIKMVDGNGKVVYRPIH
RNEFERRTSIRISGRHKDSYNRLYIRDRKYFKRLLKEFNNATEQFSLQDL
IKQDKYQSMLQPGARHHFIPSGLANVKLKFCTRCEDESKHVLMERYYIDT
NDKAHYRTVLCYGCMGTVLRNHKEMSEPGTKFMEYY
Run BLAST on NCBI

transcript from alignment at sc0000080:666778..671300+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007866 ID=TCONS_00007866|Name=TCONS_00007866|organism=Clytia hemisphaerica|type=transcript|length=4523bp|location=Sequence derived from alignment at sc0000080:666778..671300+ (Clytia hemisphaerica)
TGGAGATTTGTCAATTTATACTCTTTAAGAATCTGGATTTTAGAATATTA
GAGAGAGATTTTGAGAGGCGGAGTAAAAGATATTTTTGGAattcaagaaa
aagaaagaaaaagatctCAGTTTGTAATGGATCAAAAGTTTAATAATAAA
CAAACTAATCTTGAGCCAAAACTCTTGAGCTCTGAAACTGTTTACTAAGC
TAATACTGTATGGGATTTATATGGAAGGAACTATGGCTTGCTGTGTTCAT
TCGATTAAGACTACATTGTGCGGATATATCCATGTGAAAGTTCGCTATAA
TCACACTGCCAGATACTCGGCTTGAAACCTGCTAAATCTCACAGCTCTCA
CTGTGTGTGAAACATAAGACAAATGAACTTTTGCGAGAATTCTTTTCATC
TTGTATTGTCTTGGCGCTATGGACAGCGCATAACTGCCATGCTATATACT
CCTTCAAGAAAGCTTCTTGTCATTTGatctaattttatttttctagaaGG
TTGTTACATAAATAAAGATTGGTTGACTTTGGGTTTTGTATATTTGAGTT
GTTGGAGAGGTTGTGTAAAGATGATTCAAAATATCATCTCTGATCAGGTG
AAtgacaaacaaaacaaagaacttCAAAAGAAGAATAAGAGCGTGAAGAA
GGATGtcaagaaagtgaaaaatatcaaaatggtgGATGGGAACGGGAAAG
TTGTGTACCGACCAATTCACCGGAACGAATTCGAGAGGCGGACAAGTATC
CGGATCAGTGGCCGTCATAAGGATTCGTACAACCGACTTTATATCAGGGa
tcgaaaatatttcaaacggtTATTGAAGGAGTTTAATAATGCCACTGAAC
AATTTTCTTTGCAAGATTTGATCAAACAAGACAAATATCAAAGCATGCTT
CAGCCTGGAGCAAGACATCATTTTATACCGTCCGGGCTAGCCAATGtaaa
gttgaaattttgtacTCGCTGTGAAGACGAGTCGAAACATGTTCTGATGG
AGAGATATTACATCGACACGAACGATAAAGCCCATTACCGGACTGTTTTA
TGCTACGGATGTATGGGTACCGTATTACGGAATCACAAGGAAATGTCAGA
ACCGGGAACTAAATTTATGGAATACTACTGacaaagattcttttgtttta
cataTAAATTTGGAAATATATTTCATACAGTCTATTATTTGTAAAATGCT
ACCTATAACCGAGCctataacaagcaaacaaaaaacgaaaaaacaaccAG
TGAAAGATGGCAAAAATATGTGTTTAGATGTTTGTCAAGACTGGCGAAAA
ATATTATTTCGGGTCTTATTTCAAAACAGTATTATCCGATATAGcagaaa
tatcaaaacaaaaacaacagcgTTTTGTGGCTGATGAACAAACTTCCGAT
CCTCGAGTTCCAACATGAAATGAAACACAAACTTAACAAACTACCTACTT
ATGTTTGGTAGTCGCATGAACCTCATACAAGGTCCTGACTGTTCCCTTGC
GTGGATATAAAAGTTTCAGAACCTATAACAAGTGTTGtcataaaatatat
tttgaaaagaattatAACTAAAACTAATCTAATTTTAGGGTGTTGCAAGG
CCGAGAAATTAGATTCCTGATAATGGTTGTCCGTTTAAAATATTGCGTCT
ATCAATTTACAACAGATTAATACACCCCGTGGCAAGGATCAGGTAGAACC
CGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNcaaaaaacgaaaaaacaaccAGTGAAAGATG
GCAAAAATATGTGTTTAGATGTTTGTCAAGACTGGCGAAAAATATTATTT
CGGGTCTTATTTCAAAACAGTATTATCTGATATAGcagaaatatcaaaac
aaaaacaacagcgTTTTGTGGCTGATGAACAAACTTCCGATCCTCGAGTT
CCAACATGAAATGAAACACAAACTTAACAAACTACCTACTTATGTTTGGT
AGTCGCATGAACCTCATACAAGGTCCTGACTGTTCCCTTGCGTGGATATA
AAAGTTTCAGAACCTATAACAAGTGTTGtcataaaatatattttgaaaag
aattatAACTAAAACTAATCTAATTTTAGGGTGTTGCAAGGCCGAGAAAT
TAGATTCCTGATAATGGTTGTCCGTTTAAAATATTGCGTCTATCAATTTA
CAACAGATTAATACACCCCGTGGCAAGGATCAGGTAGAACCCGTTCCTTG
TGAGAAAAGCGCTCAGAGTCTCGCCCATTTAAATTCTTATCTCTACCAGG
GAAAACATTAGACTAGTATAGTCGTTGAATGAAAAACATCACACCGGAAA
ATCTTACTAGAGTGGTAAAATCGGGAAACCGTATCTAGAacgatattctc
aaatttcagTTATTTTCCTTCTCTCTCGCGCGCTAATTCCCGTGCGAACG
TTTTACCGATTATACCTAGCCAGTACCCGACTCCTAAATTTTGTTGCGCG
CGGTAAATAACAGACTTGTTTACAAGTCTAGGAAAACATTAGTTTTCTGA
ATTTCAGCCCAAGTTTGAGTAATTATCAATCTTAAAGCAAGAACTTTTCC
ATTCTCCATCGAATTTGTGCTCACCAAGGGTAAAGGATTCTCACTACCCC
ACtgcaggcacgacggaagctttttatatctggtacggcgaatgaggaaa
tttaagcgattttatagcgatttgaccgacgaagaggaaaacttcgggta
tNAGTGATCTCAATGTAGCCAATTTTTAGGGTGTTGCAAGGCCGAGAAAT
TAGATTCCTGATAATGGTTGTCCGTTTAAAATATTGCGTCTATCTATTTA
CAACAGATTAATACACCCCGTGGCAAGGATCAGGTAGAACCCGTCCTTTG
TGAGAAAAGCGCTCAGAGTCTCGCCCATTTAAATTCTTATCTCTACCAGG
GATAACATTAGCTTTCTGAATTTCAGCCCAAGTTTGAATAATTATCAATC
TTAAAGCAAAAGCTTTTCCattctccatcaaatttgtgcTCACCAAGGGT
AAAGGATTCTCACTACTCCACTGAGACAAGGGTGTATAGAACTAATCTGA
TATAATGACATCTCAAATTTTAAACATCGTGATCTTGTAACATATTATAG
TTAGAAGATTTCACTTACTTACTAGCTTCCCAGATTATTCTTTCAAATTA
TAACTTTGTACCTATTATAACTGTTATGGCGATATTTTGTGATATATAAA
GTATTCTGGCAATAAGAAGAGCA

Coding sequence (CDS) from alignment at sc0000080:666778..671300+

>TCONS_00007866 ID=TCONS_00007866|Name=TCONS_00007866|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at sc0000080:666778..671300+ (Clytia hemisphaerica)
ATGATTCAAAATATCATCTCTGATCAGGTGAAtgacaaacaaaacaaaga
acttCAAAAGAAGAATAAGAGCGTGAAGAAGGATGtcaagaaagtgaaaa
atatcaaaatggtgGATGGGAACGGGAAAGTTGTGTACCGACCAATTCAC
CGGAACGAATTCGAGAGGCGGACAAGTATCCGGATCAGTGGCCGTCATAA
GGATTCGTACAACCGACTTTATATCAGGGatcgaaaatatttcaaacggt
TATTGAAGGAGTTTAATAATGCCACTGAACAATTTTCTTTGCAAGATTTG
ATCAAACAAGACAAATATCAAAGCATGCTTCAGCCTGGAGCAAGACATCA
TTTTATACCGTCCGGGCTAGCCAATGtaaagttgaaattttgtacTCGCT
GTGAAGACGAGTCGAAACATGTTCTGATGGAGAGATATTACATCGACACG
AACGATAAAGCCCATTACCGGACTGTTTTATGCTACGGATGTATGGGTAC
CGTATTACGGAATCACAAGGAAATGTCAGAACCGGGAACTAAATTTATGG
AATACTACTGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004456XLOC_004456Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007866-exon-sc0000080-1491911889:666778..668469TCONS_00007866-exon-sc0000080-1491911889:666778..668469Clytia hemisphaericaexon
TCONS_00007866-exon-sc0000080-1510915933:666778..668469TCONS_00007866-exon-sc0000080-1510915933:666778..668469Clytia hemisphaericaexon
TCONS_00007866-exon-sc0000080-1575043694:666778..668469TCONS_00007866-exon-sc0000080-1575043694:666778..668469Clytia hemisphaericaexon
TCONS_00007866-exon-sc0000080-1491911889:670261..670333TCONS_00007866-exon-sc0000080-1491911889:670261..670333Clytia hemisphaericaexon
TCONS_00007866-exon-sc0000080-1510915933:670261..670333TCONS_00007866-exon-sc0000080-1510915933:670261..670333Clytia hemisphaericaexon
TCONS_00007866-exon-sc0000080-1575043694:670261..670333TCONS_00007866-exon-sc0000080-1575043694:670261..670333Clytia hemisphaericaexon
TCONS_00007866-exon-sc0000080-1491911889:670565..671300TCONS_00007866-exon-sc0000080-1491911889:670565..671300Clytia hemisphaericaexon
TCONS_00007866-exon-sc0000080-1510915933:670565..671300TCONS_00007866-exon-sc0000080-1510915933:670565..671300Clytia hemisphaericaexon
TCONS_00007866-exon-sc0000080-1575043694:670565..671300TCONS_00007866-exon-sc0000080-1575043694:670565..671300Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007866-proteinTCONS_00007866-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:666778..671300 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0370996	0.0507543	1.15571	1.27935	0.572724	0.370487	0.844866	0.501268	2.97266	3.52527	1.93501	2.27912	1.67425	1.17234	4.26938	2.51456	4.39621	4.13401	3.26518	4.86636	4.9951	5.55097	21.9953	15.8915	3.41924	1.4563
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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