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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007858 ID=TCONS_00007858|Name=TCONS_00007858|organism=Clytia hemisphaerica|type=transcript|length=2206bp
CACTCGTTGAAAGAAATCTTCAGAGTTTATCCAGCAGCCGTTGATTCAAT
CACTCTACAACACGAACTTGAAGAAGAAgattataaaaagaagaaaagac
ttTTCATTCCTTGGAGCAAACGAGCTTCTTTCATAGCAGCTACTTATATA
GAGAATCCTGAAACACTCACTCAACCACCTGTAGTTACGACTTTCCAACG
TCGAAAACAAGGACGTTTCGCATCTTTTCGTCGTACACGATCAACAATCA
CAACTGAAACGACCACACAAAGTGTTTCTTCGACCAGAAAGTTCAATTTA
CGGCGCATGAATAGTTTAGATCGTAATACGATACGATCGTTTCGAAGCAG
CGCGTCCACTTTACGGAGACAAAACAGTGAGAATAACGCTACTTGGAAAA
AGAAGAGAATGAGCTCGGTTTCTTCGCTACAAAAACAACAGAGCTTTGAT
GCTGGCTCCTTAAACCATCGGGATGCACGAGCTCTTAAACAACGAAAAAG
TAATCGCTATAAAGTGGACGGTGCTCAAAGTTTCTTTGATAGATACCAAG
ATACTTTACGAGTTGATATGTTCTCCGTTGACTTGAATAAACTGACGATA
AAAAGCAATAAAAGNGGACGAGCTTTTTGTTCATAAAATCATATTAAATT
TGATATCACTTTGATAAGCTTATAGACGAGCCAGGAGCTGTTTTATGTCA
TTTCTTTTCTTTGCTTCAAATAATAAGGAGTTTATCCAGCAGCCGTTGAT
TCAATCACTCTACAACACGAACTTGAAGAAGAAgattataaaaagaagaa
aagacttTTCATTCCTTGGAGCAAACGAGCTTCTTTCATAGCAGCTACTT
ATATAGAGAATCCTGAAACACTCACTCAACCACCTGTAGTTACGACTTTC
CAACGTCGAAAACAAGGACGTTTCGCATCTTTTCGTCGTACACGATCAAC
AATCACAACTGAAACGACCACACAAAGTGTTTCTTCGACCAGAAAGTTCA
ATTTACGGCGCATGAATAGTTTAGATCGTAATACGATACGATCGTTTCGA
AGCAGCGCGTCCACTTTACGGAGACAAAACAGTGAGAATAACGCTACTTG
GAAAAAGAAGAGAATGAGCTCGGTTTCTTCGCTACAAAAACAACAGAGCT
TTGATGCTGGCTCCTTAAACCATCGGGATGCACGAGCTCTTAAACAACGA
AAAAGTAATCGCTATAAAGTGGACGGTGCTCAAAGTTTCTTTGATAGATA
CCAAGATACTTTACGAGTTGATATGTTCTCCGTTGACTTGAATAAACTGA
CGATAAAAAGCAATAAAAGTGACGGTTCATCGACCACAAAATCCGTCACC
CCTACGACCCCTCTCACACCGAACTCTACCGACGATAAAGACTCGGTTTT
CGATTACAGCGACGAACATTTATCGAAAGAATTTGATTACAAACTTGTCG
GTAAAACGTACCAACAACTATTTTACATTCGTTCAAGGCTTTCAGCGAGT
GCGCGTAAAAGTGAATTTATGTGTGATGGTTCGTTTGGATGTTCTGCTTG
TGATCTGCAATGTTACCCTGAATGGACGAATTCGTAAAAACTTGAACAAG
AGAAAGTGGTAGAATGAGATAATGTTATGACTTGTGGATCGCCTTTGGTG
AGATAAAACGGTGGCCTGATccaaaaactgtttttctttacgGCAAGTGA
CTATACTTGAAACTAATGAGCGTGAGAAACGAAAGTACAATCCAGTCTAT
AAGATCTTGTTTGTTTAGAAGGTTACCAAGGGGTCAATGAACGTTCTcag
tgaaaatgtttttgatctCTCTACTTGATCCTAAATGAGGAAGGAAATCA
ATTTATGGAATTAAAGAGAAAAGTTGAACATAAATTTCTGATGGACTGTC
AAGGAAGTCATTTTCTGTCAGCCATGTAAGTTGTCACAATGAATGTACGA
GTTTTGCTGTGAATCTTTATTTTGAGATGTTTCGATCTCAACTGTCAAGT
TACCATCAATATGAACCTTTGCTAACTAATTCATAAAAGAATTCGCCATT
TTAGAAGGATTTCGATTTTTGTCCGAAATATTATTTATATCGTCCAATGT
CTAACAATAtttgtaaatatatttttcgCAGCAATATTTTTCCTTTGTAG
TTATTTTCTATTGTACATAAATacggaaaataaattttgaaaatttgaca
aactaa Run BLAST on NCBI transcript from alignment at sc0000080:633067..640196+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007858 ID=TCONS_00007858|Name=TCONS_00007858|organism=Clytia hemisphaerica|type=transcript|length=7130bp|location=Sequence derived from alignment at sc0000080:633067..640196+ (Clytia hemisphaerica)
CACTCGTTGAAAGAAATCTTCAGTAAgtcaaatatttaatttctgTTTTA
AAATGCTTCGTATTGAAACGTTTCTGGTAATGTTATGTCGTTCTCGTTTA
GTTTTTCTCGGCTTTGAGCTAGTTTTTTTAGCTATATGCGATAAGCTCTT
CCTTCTCAGGCCTTGTTGATTTGATTTAAGCTACCTCTCAACTATAGTAA
ACAATGTTTTTGGCTTCTTATCAATCCTTTGTTTTGTTGGAGGTTTGGCT
tgacgaaaaatatttcaagcttttttattcaatttcagTTCGTGATGTTT
TTTGAAACACTTTttaattctttgtttttatNGAAAACATTTCaagcttt
tttattcaatttcagTTCGTGATGTTTTTTGAAACACTTTttaattcttt
gtttttatgaCTCGTATTATTGCATACGTCTTTAGCTCGATAATTATACT
ACGATAGGAAATTGAAGAATTTTATGAAGTATTTGTGACGACGATACTCG
TTCGGTCTGTATCAGAAAAATGCTCACAATAATACTTTGTGCATCTTTCA
TGCATGAGAGAATGCATTTTAAGATGATGCAAAGAGCTTGAGATGAGTCT
AGATGACGAATATATTGTGGCAGACCAACCTCCTTCCTGATATACTCATG
CACGCAAGTCGAACAATTTGTCAATATTCTATTCCAAgacatcaaaacac
aaaaaccaTTGAAAGAAGAGGAGGGTGATTCAATGAGGTCCAATTTCAAA
ACATCATCAGTCATGATGCTAAAATGTACTTCAGATAGAGACAGAATGGA
AAATCATACTTCATATTTCACTCTATAGATCACCAAAGAGTGTTTGTCCC
GTACAAAATCCTTTCTTTTGCAATGCAGATGATccgataaacattttttt
atctttttgtagCTTGACCTTTCTCTATACCTCTTGTCATTAGATTTTGC
AATCACCTTTCTTCAGCATATGTTTCATATCATAATTTTTGACACCATCA
TTTTTTTGCCCCATTTTTATTGAgtttatggatttttgagaactATTATA
ACCTCTGTTTCTTTGCTCCGCTTGGTTTGGAGCCCGTAGCAAAATTTGAG
atgatttgtcaaaaaaccCTTAATTTCCAGGAAAGGCGACTTTTAAACTT
AACTTTTAGCTTATTTAGGAAAAATTCCAATGACCTTCTAATCGGAAGGG
TCCTTCCTACTGGCTACTGGCTTCCTACTTAAATCCTACTCGTTTTGCAC
GCCCCTGTATCAATGATTGCTCTACTTAATTTACTTCCACAGAATATAAA
TATCAAAATGTTGGACGATGGAGTAAATTATCAGATTTTACAATTACATT
TAAGTATGTAAGTATGATAAAGATCTTTTACAGTGACTCCTATctctcaa
caacaaaaaaagtcGGTCAAATTTGTCGACTCATTACATTCTGATATCCA
GGAATTGAAATCTTTTTAAGATCTCTGAATGCAATTATTTCTTTGGCTCC
TGTTCTTAATCCTATACGTTGACTACGGATTTTCATTCTCATTCTCTCTC
TTATAACCTTATTTTATATCCTGCTAgctattatgacgtcataaatatat
cgactttgtttttgatgaaaattaattacaattttttttctgcttaCAAG
TTAACAAAGTGTCTGATTAATTTCTCCTGAGATTCCATGCTGTTATTTCG
TCATCCTTCTGcgatgacaaagaaaaaaagtgctCTCTATACAAAAGCTT
GTTAGATTGAAATTGTAAAAGATTGAAATTGGTTGTTAGCCTTTGcaagt
tcaatattttttactCTTTGAAAGATTTGTATGGTTGATAATTTTCTACC
GGACGATTGatagatatttttttctttcgacTTTTTTCTGAGGTAAGATA
TCACTTTCCGTCTTATCTTGTTCAGAAagcctcaaaattttcttcttttt
ttgcagATCTTTTAATCCATGACAGGTCTGCTACAGATGAATTTACATTT
TTGTTGGAGTTGTTTGGCATTAAGCTTACCAGTAACCGACCTTGCGGTTT
ACAAACTTTTTACTTCTTTCTGTAGAAAAGAAAATGTGTTTTTATGTGAC
ATGCTTTTGAAGTTATGAGATCATTGGCATAATACGCTTGTTGATGCAAC
ACTTCCTTATATGACTCTCGTTATTTGGATATTTTATCAACCTTGTAGCC
TTCCTGGGCTTCATTGTGAAAATCCTCTTATGTCTAGTAAGCTGTAAGTT
AAGTAATATCTCGTATGAATAACACCTGATTTGTGTCTTTCGGCAAAACT
TTGTCAATGTCCTCTCGAACATGTCGTTAGTTTTTGTCTTGGTCTTTTAC
AATATATTGAATTTCGATAATCCTTTCCAGTCATTCATTAGTCATCCATC
TCAAGATGTGTGTCCAAGCTCTCTTTAtatctcttttatatttttctctt
tttacatttaaaagttttaatggAAACATCTCTGTATATTGTCTCCATAA
TTTGAATGTCAAGCAGATCAATAAtctttcgaattacagagaattTGAGT
TATAGAGAGGCAAATTATCctggttcgagttatagagaggcGAATTATCC
TGGCTCGAGTTATAGAGAGGCGAATTATCctggttcgagttatagagact
ctacTATACTTCCATTGTTTAACTTATTCTGTATCAAAAATAGGAAATAT
TTCTGAGGGAAAAGCTTTTGCACCGACAGGACTTGACGTATAACAGTCTG
TCcagtcaaaaatttttgatgaggaAATGAGTTTTAAGCGGTCTTTCTTG
GACAAACTACTCTTCCTTTTATAGATTCCTGGTTCAGTAATTAATTTCGA
TCAGATTTTCTAAACTATATTTATACTTTTGCTTGCTATCACTTCAGGGg
gcttttttaaagattttggcATCAACAGCGTTGAAATATTTCGATTTCCA
TCGCATTTTCTACAAACTTCTTGCCAACCGCACCAATTGGCTGATGAGGA
AATTGAAAGATTCTAATGACTCTCGTTTAGATGGGACCACCCTTTCACCT
CTAAAACGAGAAGAATTTCTCAACAATTGACAAGATATATAAGTCAGTTT
TGGATTTAATTTGTTAATGATGTTATTGGGTGGTTACCAGACCTCCTATT
GATATGAttgttttcgaaagtttttCATCGATTAATTTTggaatgaagaa
aaaataacagaTTTTGGCAATCTAGAAATTTTACTCGAATCTTCAACACA
TAATGCTTTGTGATTTCTAAATGCTAAATTCAAAATTGTCATcgaatttc
attttgaaatttgaatcttCACATAGACTTTTGCAAGAGTTCTGCCTTCA
GGCAAATCAATCTATAGTATCTGAGAACTTTTTAAGGGTCAAATTTCAGT
CTGTTTGAAACATTAAACATTAAGAAGGGGCTTTTTGGAGTATCGTTTCG
TCATATCATCGATAACTTGAACATTTGTCTGCTGACGTTTGCAGTGTGAT
TGATAAGTGATTCTTAAAGCGATTATTGTCATCACATTTTTTTACTGATT
TATGATTTCGCATGTGTTTCTTTAGAGTGGTCATGAGAAATCTTGTTTAT
GTCCTTTCAGCAAATCTTGTTATTGCTACAAGTCGTGCTGTTGGTGTATT
TTCCCTTATAATAGTCTACTTGTCAAGACAGAAGGGTCTGGAATAAATAT
CGTTTACTCATATGGCCTGGTTGTTACGCGGGAAGGGTCCTGTTGCTTCA
AACACGCTGAGAAGGCATGAACGTCGTTTGGCAAAAGAGACTTGAATAGA
ATCTTGGatataattttttctagccaGCGAACGTGACTGTCATGAGGTCA
TCTTTTTATTGTGTTATTCTTAAGTTTGATGTATTTTCATGTGTGGAAAA
AAATAATCTCAGTTGACGAGGGATGTACATTTTGCCAAAAAGATTCATGT
CATGAAAGATATTGTTTGTCGCTTGAAGTCTTCTTAGAGAGAAATTGTTA
TTGTTGAACACCTCACTCTACAAAGCCTCTTGTTTGTCACCTCTTGCACT
GGTCTGTGGGACAAAGTCCTtctcaaccaatcagaattgAGCATTTGACT
TCTCTCATCAAATGAGTTGTTCCACTTGATACAATTTCTCAAATGACGTC
ATCTCCGCTTCTCTCAGCGCTACTTATTATATAGATGGCAGGACGAGCTT
TTTGTTCATAAAATCATATTAAATTTGATATCACTTTGATAAGCTTATAG
ACGAGCCAGGAGCTGTTTTATGTCATTTCTTTTCTTTGCTTCAAATAATA
AGGTAAATGATATGTTCTCGGTGGTCAAGTCATGAGAATTTCTCGGTTTG
GATGATGAGTTTTGTAAGTTGCGTAAAGGTGTCGTAACTGATAGTAAAAG
TTCAAGCCAAAAAAGGGTTTTTACCTTTGAGGAAAACGAGTTGAACAAGT
TTGTGCTTTTATGATAATTAGTTATGATAAGCATGGCGTAACTGCTtgat
attgttttgttttgagaacGTCAACTTTTGCATTGATGTCATTTAAATAG
TGCATTGTATAACGACCACTAATTATTTTCCTCTATCGCCTTGTGTTTAT
AACTTTCACTGTTTGTTTTTATAGGAGTTTATCCAGCAGCCGTTGATTCA
ATCACTCTACAACACGAACTTGAAGAAGAAgattataaaaagaagaaaag
acttTTCATTCCTTGGAGCAAACGAGCTTCTTTCATAGCAGCTACTTATA
TAGAGAATCCTGAAACACTCACTCAACCACCTGTAGTTACGACTTTCCAA
CGTCGAAAACAAGGACGTTTCGCATCTTTTCGTCGTACACGATCAACAAT
CACAACTGAAACGACCACACAAAGTGTTTCTTCGACCAGAAAGTTCAATT
TACGGCGCATGAATAGTTTAGATCGTAATACGATACGATCGTTTCGAAGC
AGCGCGTCCACTTTACGGAGACAAAACAGTGAGAATAACGCTACTTGGAA
AAAGAAGAGAATGAGCTCGGTTTCTTCGCTACAAAAACAACAGAGCTTTG
ATGCTGGCTCCTTAAACCATCGGGATGCACGAGCTCTTAAACAACGAAAA
AGTAATCGCTATAAAGTGGACGGTGCTCAAAGTTTCTTTGATAGATACCA
AGATACTTTACGAGTTGATATGTTCTCCGTTGACTTGAATAAACTGACGA
TAAAAAGCAATAAAAGNGGACGAGCTTTTTGTTCATAAAATCATATTAAA
TTTGATATCACTTTGATAAGCTTATAGACGAGCCAGGAGCTGTTTTATGT
CATTTCTTTTCTTTGCTTCAAATAATAAGGTAAATGATATGTTCTCGGTG
GTCAAGTCATGAGAATTTCTCGGTTTGGATGATGAGTTTTGTAAGTTGCG
TAAAGGTGTCGTAACTGATAGTAAAAGTTCAAGCCAAAAAAGGGTTTTTA
CCTTTGAGGAAAACGAGTTGAACAAGTTTGTGCTTTTATGATAATTAGTT
ATGATAAGCATGGCGTAACTGCTtgatattgttttgttttgagaacGTCA
ACTTTTGCATTGATGTCATTTAAATAGTGCATTGTATAACGACCACTAAT
TATTTTCCTCTATCGCCTTGTGTTTATAACTTTCACTGTTTGTTTTTATA
GGAGTTTATCCAGCAGCCGTTGATTCAATCACTCTACAACACGAACTTGA
AGAAGAAgattataaaaagaagaaaagacttTTCATTCCTTGGAGCAAAC
GAGCTTCTTTCATAGCAGCTACTTATATAGAGAATCCTGAAACACTCACT
CAACCACCTGTAGTTACGACTTTCCAACGTCGAAAACAAGGACGTTTCGC
ATCTTTTCGTCGTACACGATCAACAATCACAACTGAAACGACCACACAAA
GTGTTTCTTCGACCAGAAAGTTCAATTTACGGCGCATGAATAGTTTAGAT
CGTAATACGATACGATCGTTTCGAAGCAGCGCGTCCACTTTACGGAGACA
AAACAGTGAGAATAACGCTACTTGGAAAAAGAAGAGAATGAGCTCGGTTT
CTTCGCTACAAAAACAACAGAGCTTTGATGCTGGCTCCTTAAACCATCGG
GATGCACGAGCTCTTAAACAACGAAAAAGTAATCGCTATAAAGTGGACGG
TGCTCAAAGTTTCTTTGATAGATACCAAGATACTTTACGAGTTGATATGT
TCTCCGTTGACTTGAATAAACTGACGATAAAAAGCAATAAAAGTGACGGT
TCATCGACCACAAAATCCGTCACCCCTACGACCCCTCTCACACCGAACTC
TACCGACGATAAAGACTCGGTTTTCGATTACAGCGACGAACATTTATCGA
AAGAATTTGATTACAAACTTGTCGGTAAAACGTACCAACAACTATTTTAC
ATTCGTTCAAGGCTTTCAGCGAGTGCGCGTAAAAGTGAATTTATGTGTGA
TGGTTCGTTTGGATGTTCTGCTTGTGATCTGCAATGTTACCCTGAATGGA
CGAATTCGTAAAAACTTGAACAAGAGAAAGTGGTAGAATGAGATAATGTT
ATGACTTGTGGATCGCCTTTGGTGAGATAAAACGGTGGCCTGATccaaaa
actgtttttctttacgGCAAGTGACTATACTTGAAACTAATGAGCGTGAG
AAACGAAAGTACAATCCAGTCTATAAGATCTTGTTTGTTTAGAAGGTTAC
CAAGGGGTCAATGAACGTTCTcagtgaaaatgtttttgatctCTCTACTT
GATCCTAAATGAGGAAGGAAATCAATTTATGGAATTAAAGAGAAAAGTTG
AACATAAATTTCTGATGGACTGTCAAGGAAGTCATTTTCTGTCAGCCATG
TAAGTTGTCACAATGAATGTACGAGTTTTGCTGTGAATCTTTATTTTGAG
ATGTTTCGATCTCAACTGTCAAGTTACCATCAATATGAACCTTTGCTAAC
TAATTCATAAAAGAATTCGCCATTTTAGAAGGATTTCGATTTTTGTCCGA
AATATTATTTATATCGTCCAATGTCTAACAATAtttgtaaatatattttt
cgCAGCAATATTTTTCCTTTGTAGTTATTTTCTATTGTACATAAATacgg
aaaataaattttgaaaatttgacaaactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007858-exon-sc0000080-1491911889:633067..633088 | TCONS_00007858-exon-sc0000080-1491911889:633067..633088 | Clytia hemisphaerica | exon |
| TCONS_00007858-exon-sc0000080-1510915933:633067..633088 | TCONS_00007858-exon-sc0000080-1510915933:633067..633088 | Clytia hemisphaerica | exon |
| TCONS_00007858-exon-sc0000080-1575043694:633067..633088 | TCONS_00007858-exon-sc0000080-1575043694:633067..633088 | Clytia hemisphaerica | exon |
| TCONS_00007858-exon-sc0000080-1491911889:637691..638395 | TCONS_00007858-exon-sc0000080-1491911889:637691..638395 | Clytia hemisphaerica | exon |
| TCONS_00007858-exon-sc0000080-1510915933:637691..638395 | TCONS_00007858-exon-sc0000080-1510915933:637691..638395 | Clytia hemisphaerica | exon |
| TCONS_00007858-exon-sc0000080-1575043694:637691..638395 | TCONS_00007858-exon-sc0000080-1575043694:637691..638395 | Clytia hemisphaerica | exon |
| TCONS_00007858-exon-sc0000080-1491911889:638718..640196 | TCONS_00007858-exon-sc0000080-1491911889:638718..640196 | Clytia hemisphaerica | exon |
| TCONS_00007858-exon-sc0000080-1510915933:638718..640196 | TCONS_00007858-exon-sc0000080-1510915933:638718..640196 | Clytia hemisphaerica | exon |
| TCONS_00007858-exon-sc0000080-1575043694:638718..640196 | TCONS_00007858-exon-sc0000080-1575043694:638718..640196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:633067..640196 + |
Blast
The following BLAST results are available for this feature:
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