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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007841 ID=TCONS_00007841|Name=TCONS_00007841|organism=Clytia hemisphaerica|type=transcript|length=2118bpRun BLAST on NCBI protein sequence of TCONS_00007841-protein >TCONS_00007841-protein ID=TCONS_00007841-protein|Name=TCONS_00007841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=602bp HFLWTKRQFLSFLVAFPSKTAFIMSTITDGLSSLPDGPDEVSRGSSVSSGRun BLAST on NCBI transcript from alignment at sc0000080:477053..499763+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007841 ID=TCONS_00007841|Name=TCONS_00007841|organism=Clytia hemisphaerica|type=transcript|length=22711bp|location=Sequence derived from alignment at sc0000080:477053..499763+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000080:477053..499763+ >TCONS_00007841 ID=TCONS_00007841|Name=TCONS_00007841|organism=Clytia hemisphaerica|type=CDS|length=18090bp|location=Sequence derived from alignment at sc0000080:477053..499763+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007841 vs. Swiss-Prot (Human)
Match: POC5 (Centrosomal protein POC5 OS=Homo sapiens GN=POC5 PE=1 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 1.403e-54 Identity = 91/219 (41.55%), Postives = 151/219 (68.95%), Query Frame = 1
Query: 580 DKDLIRMDNAMNDWCLQLKRNVLNELADMKKKQLLYQEQILDQMKSKHNAEHLHSTHEMESMKELLYTFEQSVKQKDEVIANLTSMLGKQKERSEKIRIFSVWRLKHNDERRQVFAQKMAEKFYKRSLMNKVWIGWRSVVENTWKRRVEKACQIKSQEICLKLTEDYEERLQALQQELAGARAEIAKMHTERDCYEENMKKAFMRGVCALNMEAMSMFK 1236
D++L +M+N ++ W LK N+++EL+ + + + + + K KH A +++ +KEL TFE S+ +KDEVI++L+ +GKQKE+ E +R F WR+ H R+ V+ K+A+++Y+R+L+ KVW WRSVV+ WK VE+ACQ +++E+C++++ DYE ++ L L A+AEI +M E++ +E++MKKAFMRGVCALN+EAM++F+
Sbjct: 153 DENLQKMENVLDLWSSGLKTNIISELSKWRLNFIDWHRMEMRKEKEKHAAHLKQLCNQINELKELQKTFEISIGRKDEVISSLSHAIGKQKEKIELMRTFFHWRIGHVRARQDVYEGKLADQYYQRTLLKKVWKVWRSVVQKQWKDVVERACQARAEEVCIQISNDYEAKVAMLSGALENAKAEIQRMQHEKEHFEDSMKKAFMRGVCALNLEAMTIFQ 371 The following BLAST results are available for this feature:
BLAST of TCONS_00007841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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