TCONS_00007677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007677
Unique NameTCONS_00007677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007677 ID=TCONS_00007677|Name=TCONS_00007677|organism=Clytia hemisphaerica|type=transcript|length=806bp
NagtgtgaaaacaaaaaacaaaaattaatcaaCAAAAATGGAAGAATCAG
ATGGAGCACATGATACTGAAAATGAAGGGGCATCATCCAGTTCTGATAAA
AAGAAACGTTTGTTTACCAAAGAGATCCGTTGTATGTTGTATGGTTTTGG
TGATGAACAAGTCCCTTACACGGAGACAGTCGAAATGTTGGATGACCTGC
TTATACAGTTTATCACTGATACAACTGTCAAAGCTATGAACGTTGGTAAA
AAAGGGCGTGTCCATGTAGAGGatattgtttatttgattagGAAGGATcc
taagaaatatgctcgtgtTAAAGAATTGTTGACCATGAACGAAGAGTTGA
AGAAAGCTAGGAAAGCCTTTGATGCTGAAAGCTATGGCGAATAGTTTGTT
TGTCATGATATGATATAACACAACAATGATTATTATTGCTCTACGCGTCC
TATACATTTTAAGCAAACATCAGCATGATCATCATATACATTCAGGAAAG
AAATCGGTACCTGGAAAATATGgaaaagaatatatttttgcTTCATTCTC
TTTGTCAGGTCAATATTTTGTTCTCAAATCCAGATATGTTGTTGTTGTCC
ATAACAatttaatttttacataatttctattttttggTGTCAAAATTAAT
TTCGCTTTCAAAAGCTTAAAACTATTCAATCACTAaagtaaattttactt
ttttgtcaCCCGGTAGTATTTAATCACCTGTAAATAGATAATGttaaaac
agttttttaatttattcgaaccaaaattttgttttaatcaATTTTGTGTT
ACTCCG
Run BLAST on NCBI

protein sequence of TCONS_00007677-protein

>TCONS_00007677-protein ID=TCONS_00007677-protein|Name=TCONS_00007677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MEESDGAHDTENEGASSSSDKKKRLFTKEIRCMLYGFGDEQVPYTETVEM
LDDLLIQFITDTTVKAMNVGKKGRVHVEDIVYLIRKDPKKYARVKELLTM
NEELKKARKAFDAESYGE
Run BLAST on NCBI

transcript from alignment at sc0000078:719067..719872

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007677 ID=TCONS_00007677|Name=TCONS_00007677|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at sc0000078:719067..719872 (Clytia hemisphaerica)
CGGAGTAACACAAAATtgattaaaacaaaattttggttcgaataaattaa
aaaactgttttaaCATTATCTATTTACAGGTGATTAAATACTACCGGGtg
acaaaaaagtaaaatttacttTAGTGATTGAATAGTTTTAAGCTTTTGAA
AGCGAAATTAATTTTGACAccaaaaaatagaaattatgtaaaaattaaat
TGTTATGGACAACAACAACATATCTGGATTTGAGAACAAAATATTGACCT
GACAAAGAGAATGAAgcaaaaatatattcttttcCATATTTTCCAGGTAC
CGATTTCTTTCCTGAATGTATATGATGATCATGCTGATGTTTGCTTAAAA
TGTATAGGACGCGTAGAGCAATAATAATCATTGTTGTGTTATATCATATC
ATGACAAACAAACTATTCGCCATAGCTTTCAGCATCAAAGGCTTTCCTAG
CTTTCTTCAACTCTTCGTTCATGGTCAACAATTCTTTAacacgagcatat
ttcttaggATCCTTCctaatcaaataaacaatatCCTCTACATGGACACG
CCCTTTTTTACCAACGTTCATAGCTTTGACAGTTGTATCAGTGATAAACT
GTATAAGCAGGTCATCCAACATTTCGACTGTCTCCGTGTAAGGGACTTGT
TCATCACCAAAACCATACAACATACAACGGATCTCTTTGGTAAACAAACG
TTTCTTTTTATCAGAACTGGATGATGCCCCTTCATTTTCAGTATCATGTG
CTCCATCTGATTCTTCCATTTTTGttgattaatttttgttttttgttttc
acactN

Coding sequence (CDS) from alignment at sc0000078:719067..719872

>TCONS_00007677 ID=TCONS_00007677|Name=TCONS_00007677|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000078:719067..719872 (Clytia hemisphaerica)
CTATTCGCCATAGCTTTCAGCATCAAAGGCTTTCCTAGCTTTCTTCAACT
CTTCGTTCATGGTCAACAATTCTTTAacacgagcatatttcttaggATCC
TTCctaatcaaataaacaatatCCTCTACATGGACACGCCCTTTTTTACC
AACGTTCATAGCTTTGACAGTTGTATCAGTGATAAACTGTATAAGCAGGT
CATCCAACATTTCGACTGTCTCCGTGTAAGGGACTTGTTCATCACCAAAA
CCATACAACATACAACGGATCTCTTTGGTAAACAAACGTTTCTTTTTATC
AGAACTGGATGATGCCCCTTCATTTTCAGTATCATGTGCTCCATCTGATT
CTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004350XLOC_004350Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007677-proteinTCONS_00007677-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007677-exon-sc0000078-1491911889:719067..719872TCONS_00007677-exon-sc0000078-1491911889:719067..719872Clytia hemisphaericaexon
TCONS_00007677-exon-sc0000078-1510915933:719067..719872TCONS_00007677-exon-sc0000078-1510915933:719067..719872Clytia hemisphaericaexon
TCONS_00007677-exon-sc0000078-1575043694:719067..719872TCONS_00007677-exon-sc0000078-1575043694:719067..719872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:719067..719872 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
73.6753	72.8475	129.296	143.134	38.2368	29.7001	22.1777	22.2484	28.3729	22.6049	16.9252	19.8652	8.49536	7.52713	9.63283	10.0333	19.3973	19.3284	6.11287	8.78537	15.0239	16.236	33.9921	30.8296	15.9097	18.6957	10.4763	6.58117	16.9407	15.5296
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003195TFIID_TAF13
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006366 transcription from RNA polymerase II promoter
molecular_function GO:0046982 protein heterodimerization activity
Blast
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BLAST of TCONS_00007677 vs. Swiss-Prot (Human)
Match: TAF13 (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens GN=TAF13 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.511e-47
Identity = 69/97 (71.13%), Postives = 91/97 (93.81%), Query Frame = 2 
Query:   98 KKKRLFTKEIRCMLYGFGDEQVPYTETVEMLDDLLIQFITDTTVKAMNVGKKGRVHVEDIVYLIRKDPKKYARVKELLTMNEELKKARKAFDAESYG 388
            K+KRLF+KE+RCM+YGFGD+Q PYTE+V++L+DL+I+FIT+ T KAM++G++GRV VEDIV+LIRKDP+K+ARVK+LLTMNEELK+ARKAFD  +YG
Sbjct:   27 KRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANYG 123
The following BLAST results are available for this feature:
BLAST of TCONS_00007677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF132.511e-4771.13Transcription initiation factor TFIID subunit 13 O... [more]
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